BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2550809.2.1
         (876 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BF645058.1|BF645058  NF019G03EC1F1023 Elicited cell cultu...    40   0.31 
gb|CA858106.1|CA858106  EST635361 GLSD Medicago truncatula c...    40   0.31 
gb|DW018148.1|DW018148  EST1227109 MTY Medicago truncatula c...    40   0.31 
gb|AC168147.11|  Medicago truncatula clone mth2-69l5, WORKIN...    40   0.31 

>gb|BF645058.1|BF645058 NF019G03EC1F1023 Elicited cell culture Medicago truncatula cDNA
           clone NF019G03EC 5', mRNA sequence
          Length = 686

 Score = 40.1 bits (20), Expect = 0.31
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 560 gggaacagaacatctccagt 579
           ||||||||||||||||||||
Sbjct: 328 gggaacagaacatctccagt 309



>gb|CA858106.1|CA858106 EST635361 GLSD Medicago truncatula cDNA clone pGLSD-27C7, mRNA
           sequence
          Length = 724

 Score = 40.1 bits (20), Expect = 0.31
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 560 gggaacagaacatctccagt 579
           ||||||||||||||||||||
Sbjct: 273 gggaacagaacatctccagt 254



>gb|DW018148.1|DW018148 EST1227109 MTY Medicago truncatula cDNA clone MTYB288, mRNA
           sequence
          Length = 837

 Score = 40.1 bits (20), Expect = 0.31
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 560 gggaacagaacatctccagt 579
           ||||||||||||||||||||
Sbjct: 396 gggaacagaacatctccagt 377



>gb|AC168147.11| Medicago truncatula clone mth2-69l5, WORKING DRAFT SEQUENCE, 4
             unordered pieces
          Length = 117771

 Score = 40.1 bits (20), Expect = 0.31
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 560   gggaacagaacatctccagt 579
             ||||||||||||||||||||
Sbjct: 23182 gggaacagaacatctccagt 23201



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 145,273
Number of Sequences: 392609
Number of extensions: 145273
Number of successful extensions: 10536
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10531
Number of HSP's gapped (non-prelim): 5
length of query: 876
length of database: 441,732,993
effective HSP length: 20
effective length of query: 856
effective length of database: 433,880,813
effective search space: 371401975928
effective search space used: 371401975928
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)