BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2542097.2.1
(887 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG648587.1|BG648587 EST510206 HOGA Medicago truncatula c... 62 8e-008
gb|AC154391.1| Medicago truncatula chromosome 7 BAC clone m... 62 8e-008
gb|AL386624.1|AL386624 MtBC35G08R1 MtBC Medicago truncatula... 52 8e-005
gb|BF646802.1|BF646802 NF065C07EC1F1053 Elicited cell cultu... 52 8e-005
gb|BG450057.1|BG450057 NF013F01DT1F1014 Drought Medicago tr... 52 8e-005
gb|BI270127.1|BI270127 NF004H04FL1F1044 Developing flower M... 52 8e-005
gb|AC149210.2| Medicago truncatula chromosome 2 BAC clone m... 52 8e-005
gb|CG947194.1|CG947194 MBEDQ17TRC mth2 Medicago truncatula ... 48 0.001
emb|CR304683.1| mte1-24E7FM2 BAC end, cultivar Jemalong A17... 48 0.001
gb|AA660551.1|AA660551 00437 MtRHE Medicago truncatula cDNA... 48 0.001
gb|AW559492.1|AW559492 EST314540 DSIR Medicago truncatula c... 48 0.001
gb|AL377131.1|AL377131 MtBB29F01F1 MtBB Medicago truncatula... 48 0.001
gb|AL377132.1|AL377132 MtBB29F01R1 MtBB Medicago truncatula... 48 0.001
gb|AL384067.1|AL384067 MtBC18F10F1 MtBC Medicago truncatula... 48 0.001
gb|BF637321.1|BF637321 NF073B10LF1F1078 Developing leaf Med... 48 0.001
gb|BE317747.2|BE317747 NF054H09LF1F1076 Developing leaf Med... 48 0.001
gb|CB893868.1|CB893868 EST646660 HOGA Medicago truncatula c... 48 0.001
gb|CB894217.1|CB894217 EST647009 HOGA Medicago truncatula c... 48 0.001
gb|CX541756.1|CX541756 s13dNF93B11GS093_466814 Germinating ... 48 0.001
gb|AC149637.11| Medicago truncatula clone mth2-181h2, compl... 48 0.001
gb|AC146745.19| Medicago truncatula clone mth2-53p19, compl... 48 0.001
gb|AC174297.7| Medicago truncatula clone mth2-73p24, WORKIN... 48 0.001
emb|CR307640.1| mte1-28P21RM1 BAC end, cultivar Jemalong A1... 44 0.020
emb|CR318358.1| mte1-43B15RM1 BAC end, cultivar Jemalong A1... 44 0.020
gb|AA660413.1|AA660413 00289 MtRHE Medicago truncatula cDNA... 44 0.020
gb|AW574100.1|AW574100 EST316691 GVN Medicago truncatula cD... 44 0.020
gb|AW126013.2|AW126013 N100209e rootphos(-) Medicago trunca... 44 0.020
gb|AW329809.2|AW329809 N201081e rootphos(-) Medicago trunca... 44 0.020
gb|AL382706.1|AL382706 MtBC09E05F1 MtBC Medicago truncatula... 44 0.020
gb|AL389515.1|AL389515 MtBC55D04F1 MtBC Medicago truncatula... 44 0.020
gb|AL389516.1|AL389516 MtBC55D04R1 MtBC Medicago truncatula... 44 0.020
gb|BI270600.1|BI270600 NF056F01FL1F1015 Developing flower M... 44 0.020
gb|BI271250.1|BI271250 NF012B06FL1F1048 Developing flower M... 44 0.020
gb|BQ149605.1|BQ149605 NF106A08FL1F1065 Developing flower M... 44 0.020
gb|AJ501524.1|AJ501524 AJ501524 MTAMP Medicago truncatula c... 44 0.020
gb|AJ501802.1|AJ501802 AJ501802 MTAMP Medicago truncatula c... 44 0.020
gb|CF069228.1|CF069228 EST669949 MTUS Medicago truncatula c... 44 0.020
gb|CX535418.1|CX535418 s13dNF86B02MJ025_389005 Methyl Jasmo... 44 0.020
gb|AC147001.38| Medicago truncatula clone mth2-128a17, WORK... 44 0.020
gb|BF643329.1|BF643329 NF007A02EC1F1006 Elicited cell cultu... 42 0.079
gb|AW684411.1|AW684411 NF016F08NR1F1000 Nodulated root Medi... 40 0.31
gb|AL373863.1|AL373863 MtBB03C06F1 MtBB Medicago truncatula... 40 0.31
gb|AL373864.1|AL373864 MtBB03C06R1 MtBB Medicago truncatula... 40 0.31
gb|AL374517.1|AL374517 MtBB07A08R2 MtBB Medicago truncatula... 40 0.31
gb|AL379555.1|AL379555 MtBB46A06F1 MtBB Medicago truncatula... 40 0.31
gb|BI270503.1|BI270503 NF009G03FL1F1024 Developing flower M... 40 0.31
gb|CX540032.1|CX540032 s13dNF46A07GS049_463336 Germinating ... 40 0.31
>gb|BG648587.1|BG648587 EST510206 HOGA Medicago truncatula cDNA clone pHOGA-23O11 5' end,
mRNA sequence
Length = 698
Score = 61.9 bits (31), Expect = 8e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 216 ggtcgctactcccagcgtgtcggcaccggcgcccccgtctacctcgctgccgtcctcgag 275
|||||||| || |||||||| |||||||| || || |||||||||| ||||| |||||
Sbjct: 154 ggtcgctattctcagcgtgttggcaccggtgctccgatctacctcgccgccgttctcgaa 213
Query: 276 tacctcgccgccgag 290
|| ||||||||||||
Sbjct: 214 tatctcgccgccgag 228
>gb|AC154391.1| Medicago truncatula chromosome 7 BAC clone mth2-143d17, complete
sequence
Length = 123865
Score = 61.9 bits (31), Expect = 8e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 216 ggtcgctactcccagcgtgtcggcaccggcgcccccgtctacctcgctgccgtcctcgag 275
|||||||| || |||||||| |||||||| || || |||||||||| ||||| |||||
Sbjct: 76192 ggtcgctattctcagcgtgttggcaccggtgctccgatctacctcgccgccgttctcgaa 76251
Query: 276 tacctcgccgccgag 290
|| ||||||||||||
Sbjct: 76252 tatctcgccgccgag 76266
>gb|AL386624.1|AL386624 MtBC35G08R1 MtBC Medicago truncatula cDNA clone MtBC35G08 T7, mRNA
sequence
Length = 519
Score = 52.0 bits (26), Expect = 8e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 297 gagttggcggggaacgcagcgcgggacaacaagaagaaccggatcatccc 346
|||||||| || || ||||| || ||||||||||||||| ||||||||||
Sbjct: 62 gagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccc 111
>gb|BF646802.1|BF646802 NF065C07EC1F1053 Elicited cell culture Medicago truncatula cDNA
clone NF065C07EC 5', mRNA sequence
Length = 673
Score = 52.0 bits (26), Expect = 8e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 297 gagttggcggggaacgcagcgcgggacaacaagaagaaccggatcatccc 346
|||||||| || || ||||| || ||||||||||||||| ||||||||||
Sbjct: 278 gagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccc 327
>gb|BG450057.1|BG450057 NF013F01DT1F1014 Drought Medicago truncatula cDNA clone NF013F01DT
5', mRNA sequence
Length = 594
Score = 52.0 bits (26), Expect = 8e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 297 gagttggcggggaacgcagcgcgggacaacaagaagaaccggatcatccc 346
|||||||| || || ||||| || ||||||||||||||| ||||||||||
Sbjct: 422 gagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccc 373
>gb|BI270127.1|BI270127 NF004H04FL1F1044 Developing flower Medicago truncatula cDNA clone
NF004H04FL 5', mRNA sequence
Length = 578
Score = 52.0 bits (26), Expect = 8e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 297 gagttggcggggaacgcagcgcgggacaacaagaagaaccggatcatccc 346
|||||||| || || ||||| || ||||||||||||||| ||||||||||
Sbjct: 219 gagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccc 268
>gb|AC149210.2| Medicago truncatula chromosome 2 BAC clone mth2-38k7, complete
sequence
Length = 49473
Score = 52.0 bits (26), Expect = 8e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 297 gagttggcggggaacgcagcgcgggacaacaagaagaaccggatcatccc 346
|||||||| || || ||||| || ||||||||||||||| ||||||||||
Sbjct: 1724 gagttggctggaaatgcagcacgtgacaacaagaagaacaggatcatccc 1675
>gb|CG947194.1|CG947194 MBEDQ17TRC mth2 Medicago truncatula genomic clone 34C9, DNA
sequence
Length = 842
Score = 48.1 bits (24), Expect = 0.001
Identities = 84/104 (80%)
Strand = Plus / Minus
Query: 231 cgtgtcggcaccggcgcccccgtctacctcgctgccgtcctcgagtacctcgccgccgag 290
||||||||| |||| || || ||||||||| ||||||| || ||||| ||||| || |||
Sbjct: 159 cgtgtcggcgccggtgctccggtctacctctctgccgtacttgagtatctcgctgctgag 100
Query: 291 ctcctcgagttggcggggaacgcagcgcgggacaacaagaagaa 334
| | || ||||| || ||||| || ||||||||||||||||
Sbjct: 99 gttttggaattggctggtaacgctgccagggacaacaagaagaa 56
>emb|CR304683.1| mte1-24E7FM2 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 716
Score = 48.1 bits (24), Expect = 0.001
Identities = 111/140 (79%)
Strand = Plus / Minus
Query: 195 atcggccgctacctcaagcagggtcgctactcccagcgtgtcggcaccggcgcccccgtc 254
|||||||| ||||| ||| | ||||| || | ||||||||||||||||| || || ||
Sbjct: 523 atcggccgttacctgaagaaaggtcgatatgctcagcgtgtcggcaccggtgctccggtt 464
Query: 255 tacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcggggaacgca 314
||||| ||||| || || || |||||||| || ||| | || || ||||| || |||||
Sbjct: 463 tacctagctgcagttcttgaatacctcgctgctgaggttcttgaattggcaggaaacgct 404
Query: 315 gcgcgggacaacaagaagaa 334
|| || || |||||||||||
Sbjct: 403 gctcgtgataacaagaagaa 384
>gb|AA660551.1|AA660551 00437 MtRHE Medicago truncatula cDNA 5' similar to histone H2A,
mRNA sequence
Length = 593
Score = 48.1 bits (24), Expect = 0.001
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 231 cgtgtcggcaccggcgcccccgtctacctcgctgccgtcctcgagtacctcgccgccgag 290
||||||||| |||| || || ||||||||| ||||||| || ||||| ||||| || |||
Sbjct: 225 cgtgtcggcgccggtgctccggtctacctctctgccgtacttgagtatctcgctgctgag 284
Query: 291 ctcctcgagttggcggggaacgcagcgcgggacaacaagaagaa 334
| | || ||||| || ||||| || ||||||||||||||||
Sbjct: 285 gttttggaattggctggtaacgctgccagggacaacaagaagaa 328
>gb|AW559492.1|AW559492 EST314540 DSIR Medicago truncatula cDNA clone pDSIR-19D6, mRNA
sequence
Length = 495
Score = 48.1 bits (24), Expect = 0.001
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 231 cgtgtcggcaccggcgcccccgtctacctcgctgccgtcctcgagtacctcgccgccgag 290
||||||||| |||| || || ||||||||| ||||||| || ||||| ||||| || |||
Sbjct: 137 cgtgtcggcgccggtgctccggtctacctctctgccgtacttgagtatctcgctgctgag 196
Query: 291 ctcctcgagttggcggggaacgcagcgcgggacaacaagaagaa 334
| | || ||||| || ||||| || ||||||||||||||||
Sbjct: 197 gttttggaattggctggtaacgctgccagggacaacaagaagaa 240
>gb|AL377131.1|AL377131 MtBB29F01F1 MtBB Medicago truncatula cDNA clone MtBB29F01 T3, mRNA
sequence
Length = 439
Score = 48.1 bits (24), Expect = 0.001
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 231 cgtgtcggcaccggcgcccccgtctacctcgctgccgtcctcgagtacctcgccgccgag 290
||||||||| |||| || || ||||||||| ||||||| || ||||| ||||| || |||
Sbjct: 166 cgtgtcggcgccggtgctccggtctacctctctgccgtacttgagtatctcgctgctgag 225
Query: 291 ctcctcgagttggcggggaacgcagcgcgggacaacaagaagaa 334
| | || ||||| || ||||| || ||||||||||||||||
Sbjct: 226 gttttggaattggctggtaacgctgccagggacaacaagaagaa 269
>gb|AL377132.1|AL377132 MtBB29F01R1 MtBB Medicago truncatula cDNA clone MtBB29F01 T7, mRNA
sequence
Length = 527
Score = 48.1 bits (24), Expect = 0.001
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 231 cgtgtcggcaccggcgcccccgtctacctcgctgccgtcctcgagtacctcgccgccgag 290
||||||||| |||| || || ||||||||| ||||||| || ||||| ||||| || |||
Sbjct: 131 cgtgtcggcgccggtgctccggtctacctctctgccgtacttgagtatctcgctgctgag 190
Query: 291 ctcctcgagttggcggggaacgcagcgcgggacaacaagaagaa 334
| | || ||||| || ||||| || ||||||||||||||||
Sbjct: 191 gttttggaattggctggtaacgctgccagggacaacaagaagaa 234
>gb|AL384067.1|AL384067 MtBC18F10F1 MtBC Medicago truncatula cDNA clone MtBC18F10 T3, mRNA
sequence
Length = 474
Score = 48.1 bits (24), Expect = 0.001
Identities = 111/140 (79%)
Strand = Plus / Plus
Query: 195 atcggccgctacctcaagcagggtcgctactcccagcgtgtcggcaccggcgcccccgtc 254
|||||||| ||||| ||| | ||||| || | ||||||||||||||||| || || ||
Sbjct: 191 atcggccgttacctgaagaaaggtcgatatgctcagcgtgtcggcaccggtgctccggtt 250
Query: 255 tacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcggggaacgca 314
||||| ||||| || || || |||||||| || ||| | || || ||||| || |||||
Sbjct: 251 tacctagctgcagttcttgaatacctcgctgctgaggttcttgaattggcaggaaacgct 310
Query: 315 gcgcgggacaacaagaagaa 334
|| || || |||||||||||
Sbjct: 311 gctcgtgataacaagaagaa 330
>gb|BF637321.1|BF637321 NF073B10LF1F1078 Developing leaf Medicago truncatula cDNA clone
NF073B10LF 5', mRNA sequence
Length = 550
Score = 48.1 bits (24), Expect = 0.001
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 231 cgtgtcggcaccggcgcccccgtctacctcgctgccgtcctcgagtacctcgccgccgag 290
||||||||| |||| || || ||||||||| ||||||| || ||||| ||||| || |||
Sbjct: 321 cgtgtcggcgccggtgctccggtctacctctctgccgtacttgagtatctcgctgctgag 380
Query: 291 ctcctcgagttggcggggaacgcagcgcgggacaacaagaagaa 334
| | || ||||| || ||||| || ||||||||||||||||
Sbjct: 381 gttttggaattggctggtaacgctgccagggacaacaagaagaa 424
>gb|BE317747.2|BE317747 NF054H09LF1F1076 Developing leaf Medicago truncatula cDNA clone
NF054H09LF 5', mRNA sequence
Length = 398
Score = 48.1 bits (24), Expect = 0.001
Identities = 84/104 (80%)
Strand = Plus / Plus
Query: 231 cgtgtcggcaccggcgcccccgtctacctcgctgccgtcctcgagtacctcgccgccgag 290
||||||||| |||| || || ||||||||| ||||||| || ||||| ||||| || |||
Sbjct: 195 cgtgtcggcgccggtgctccggtctacctctctgccgtacttgagtatctcgctgctgag 254
Query: 291 ctcctcgagttggcggggaacgcagcgcgggacaacaagaagaa 334
| | || ||||| || ||||| || ||||||||||||||||
Sbjct: 255 gttttggaattggctggtaacgctgccagggacaacaagaagaa 298
>gb|CB893868.1|CB893868 EST646660 HOGA Medicago truncatula cDNA clone HOGA-29C10, mRNA
sequence
Length = 514
Score = 48.1 bits (24), Expect = 0.001
Identities = 111/140 (79%)
Strand = Plus / Plus
Query: 195 atcggccgctacctcaagcagggtcgctactcccagcgtgtcggcaccggcgcccccgtc 254
|||||||| ||||| ||| | ||||| || | ||||||||||||||||| || || ||
Sbjct: 69 atcggccgttacctgaagaaaggtcgatatgctcagcgtgtcggcaccggtgctccggtt 128
Query: 255 tacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcggggaacgca 314
||||| ||||| || || || |||||||| || ||| | || || ||||| || |||||
Sbjct: 129 tacctagctgcagttcttgaatacctcgctgctgaggttcttgaattggcaggaaacgct 188
Query: 315 gcgcgggacaacaagaagaa 334
|| || || |||||||||||
Sbjct: 189 gctcgtgataacaagaagaa 208
>gb|CB894217.1|CB894217 EST647009 HOGA Medicago truncatula cDNA clone HOGA-30O18, mRNA
sequence
Length = 515
Score = 48.1 bits (24), Expect = 0.001
Identities = 111/140 (79%)
Strand = Plus / Plus
Query: 195 atcggccgctacctcaagcagggtcgctactcccagcgtgtcggcaccggcgcccccgtc 254
|||||||| ||||| ||| | ||||| || | ||||||||||||||||| || || ||
Sbjct: 70 atcggccgttacctgaagaaaggtcgatatgctcagcgtgtcggcaccggtgctccggtt 129
Query: 255 tacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcggggaacgca 314
||||| ||||| || || || |||||||| || ||| | || || ||||| || |||||
Sbjct: 130 tacctagctgcagttcttgaatacctcgctgctgaggttcttgaattggcaggaaacgct 189
Query: 315 gcgcgggacaacaagaagaa 334
|| || || |||||||||||
Sbjct: 190 gctcgtgataacaagaagaa 209
>gb|CX541756.1|CX541756 s13dNF93B11GS093_466814 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 551
Score = 48.1 bits (24), Expect = 0.001
Identities = 111/140 (79%)
Strand = Plus / Plus
Query: 195 atcggccgctacctcaagcagggtcgctactcccagcgtgtcggcaccggcgcccccgtc 254
|||||||| ||||| ||| | ||||| || | ||||||||||||||||| || || ||
Sbjct: 164 atcggccgttacctgaagaaaggtcgatatgctcagcgtgtcggcaccggtgctccggtt 223
Query: 255 tacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcggggaacgca 314
||||| ||||| || || || |||||||| || ||| | || || ||||| || |||||
Sbjct: 224 tacctagctgcagttcttgaatacctcgctgctgaggttcttgaattggcaggaaacgct 283
Query: 315 gcgcgggacaacaagaagaa 334
|| || || |||||||||||
Sbjct: 284 gctcgtgataacaagaagaa 303
>gb|AC149637.11| Medicago truncatula clone mth2-181h2, complete sequence
Length = 116616
Score = 48.1 bits (24), Expect = 0.001
Identities = 111/140 (79%)
Strand = Plus / Minus
Query: 195 atcggccgctacctcaagcagggtcgctactcccagcgtgtcggcaccggcgcccccgtc 254
|||||||| ||||| ||| | ||||| || | ||||||||||||||||| || || ||
Sbjct: 2286 atcggccgttacctgaagaaaggtcgatatgctcagcgtgtcggcaccggtgctccggtt 2227
Query: 255 tacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcggggaacgca 314
||||| ||||| || || || |||||||| || ||| | || || ||||| || |||||
Sbjct: 2226 tacctagctgcagttcttgaatacctcgctgctgaggttcttgaattggcaggaaacgct 2167
Query: 315 gcgcgggacaacaagaagaa 334
|| || || |||||||||||
Sbjct: 2166 gctcgtgataacaagaagaa 2147
>gb|AC146745.19| Medicago truncatula clone mth2-53p19, complete sequence
Length = 121955
Score = 48.1 bits (24), Expect = 0.001
Identities = 111/140 (79%)
Strand = Plus / Minus
Query: 195 atcggccgctacctcaagcagggtcgctactcccagcgtgtcggcaccggcgcccccgtc 254
|||||||| ||||| ||| | ||||| || | ||||||||||||||||| || || ||
Sbjct: 80785 atcggccgttacctgaagaaaggtcgatatgctcagcgtgtcggcaccggtgctccggtt 80726
Query: 255 tacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcggggaacgca 314
||||| ||||| || || || |||||||| || ||| | || || ||||| || |||||
Sbjct: 80725 tacctagctgcagttcttgaatacctcgctgctgaggttcttgaattggcaggaaacgct 80666
Query: 315 gcgcgggacaacaagaagaa 334
|| || || |||||||||||
Sbjct: 80665 gctcgtgataacaagaagaa 80646
>gb|AC174297.7| Medicago truncatula clone mth2-73p24, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 114191
Score = 48.1 bits (24), Expect = 0.001
Identities = 111/140 (79%)
Strand = Plus / Plus
Query: 195 atcggccgctacctcaagcagggtcgctactcccagcgtgtcggcaccggcgcccccgtc 254
|||||||| ||||| ||| | ||||| || | ||||||||||||||||| || || ||
Sbjct: 31757 atcggccgttacctgaagaaaggtcgatatgctcagcgtgtcggcaccggtgctccggtt 31816
Query: 255 tacctcgctgccgtcctcgagtacctcgccgccgagctcctcgagttggcggggaacgca 314
||||| ||||| || || || |||||||| || ||| | || || ||||| || |||||
Sbjct: 31817 tacctagctgcagttcttgaatacctcgctgctgaggttcttgaattggcaggaaacgct 31876
Query: 315 gcgcgggacaacaagaagaa 334
|| || || |||||||||||
Sbjct: 31877 gctcgtgataacaagaagaa 31896
>emb|CR307640.1| mte1-28P21RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 630
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 593 aaggcgggtctccagttccccgttggccgtatcg 560
>emb|CR318358.1| mte1-43B15RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 639
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 593 aaggcgggtctccagttccccgttggccgtatcg 560
>gb|AA660413.1|AA660413 00289 MtRHE Medicago truncatula cDNA 5' similar to histone H2A,
mRNA sequence
Length = 706
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 113 aaggcgggtctccagttccccgttggccgtatcg 146
>gb|AW574100.1|AW574100 EST316691 GVN Medicago truncatula cDNA clone pGVN-51I18, mRNA
sequence
Length = 539
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 113 aaggcgggtctccagttccccgttggccgtatcg 146
>gb|AW126013.2|AW126013 N100209e rootphos(-) Medicago truncatula cDNA clone MHRP-3C11, mRNA
sequence
Length = 493
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 101 aaggcgggtctccagttccccgttggccgtatcg 134
>gb|AW329809.2|AW329809 N201081e rootphos(-) Medicago truncatula cDNA clone MHRP-24D3, mRNA
sequence
Length = 570
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 118 aaggcgggtctccagttccccgttggccgtatcg 151
>gb|AL382706.1|AL382706 MtBC09E05F1 MtBC Medicago truncatula cDNA clone MtBC09E05 T3, mRNA
sequence
Length = 477
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 123 aaggcgggtctccagttccccgttggccgtatcg 156
>gb|AL389515.1|AL389515 MtBC55D04F1 MtBC Medicago truncatula cDNA clone MtBC55D04 T3, mRNA
sequence
Length = 160
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 117 aaggcgggtctccagttccccgttggccgtatcg 150
>gb|AL389516.1|AL389516 MtBC55D04R1 MtBC Medicago truncatula cDNA clone MtBC55D04 T7, mRNA
sequence
Length = 551
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 18 aaggcgggtctccagttccccgttggccgtatcg 51
>gb|BI270600.1|BI270600 NF056F01FL1F1015 Developing flower Medicago truncatula cDNA clone
NF056F01FL 5', mRNA sequence
Length = 504
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 129 aaggcgggtctccagttccccgttggccgtatcg 162
>gb|BI271250.1|BI271250 NF012B06FL1F1048 Developing flower Medicago truncatula cDNA clone
NF012B06FL 5', mRNA sequence
Length = 469
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 113 aaggcgggtctccagttccccgttggccgtatcg 146
>gb|BQ149605.1|BQ149605 NF106A08FL1F1065 Developing flower Medicago truncatula cDNA clone
NF106A08FL 5', mRNA sequence
Length = 569
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 124 aaggcgggtctccagttccccgttggccgtatcg 157
>gb|AJ501524.1|AJ501524 AJ501524 MTAMP Medicago truncatula cDNA clone mtgmadc120008a08,
mRNA sequence
Length = 545
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 152 aaggcgggtctccagttccccgttggccgtatcg 185
>gb|AJ501802.1|AJ501802 AJ501802 MTAMP Medicago truncatula cDNA clone mtgmadc120012a07,
mRNA sequence
Length = 480
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 153 aaggcgggtctccagttccccgttggccgtatcg 186
>gb|CF069228.1|CF069228 EST669949 MTUS Medicago truncatula cDNA clone MTUS-17H8, mRNA
sequence
Length = 612
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 105 aaggcgggtctccagttccccgttggccgtatcg 138
>gb|CX535418.1|CX535418 s13dNF86B02MJ025_389005 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 538
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 121 aaggcgggtctccagttccccgttggccgtatcg 154
>gb|AC147001.38| Medicago truncatula clone mth2-128a17, WORKING DRAFT SEQUENCE, 2
ordered pieces
Length = 137841
Score = 44.1 bits (22), Expect = 0.020
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 165 aaggccggcctccagttccccgtaggccgtatcg 198
||||| || |||||||||||||| ||||||||||
Sbjct: 89072 aaggcgggtctccagttccccgttggccgtatcg 89105
>gb|BF643329.1|BF643329 NF007A02EC1F1006 Elicited cell culture Medicago truncatula cDNA
clone NF007A02EC 5', mRNA sequence
Length = 156
Score = 42.1 bits (21), Expect = 0.079
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 174 ctccagttccccgtaggccgtatcg 198
|||||||||||||| ||||||||||
Sbjct: 89 ctccagttccccgttggccgtatcg 113
>gb|AW684411.1|AW684411 NF016F08NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF016F08NR 5', mRNA sequence
Length = 505
Score = 40.1 bits (20), Expect = 0.31
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 168 gccggcctccagttccccgtaggccgtatcggccgctacctcaa 211
||||| |||||||||||||| ||||| |||| |||| ||||||
Sbjct: 69 gccggtctccagttccccgtcggccgcatcgctcgcttcctcaa 112
>gb|AL373863.1|AL373863 MtBB03C06F1 MtBB Medicago truncatula cDNA clone MtBB03C06 T3, mRNA
sequence
Length = 487
Score = 40.1 bits (20), Expect = 0.31
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 168 gccggcctccagttccccgtaggccgtatcggccgctacctcaa 211
||||| |||||||||||||| ||||| |||| |||| ||||||
Sbjct: 115 gccggtctccagttccccgtcggccgcatcgctcgcttcctcaa 158
>gb|AL373864.1|AL373864 MtBB03C06R1 MtBB Medicago truncatula cDNA clone MtBB03C06 T7, mRNA
sequence
Length = 547
Score = 40.1 bits (20), Expect = 0.31
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 168 gccggcctccagttccccgtaggccgtatcggccgctacctcaa 211
||||| |||||||||||||| ||||| |||| |||| ||||||
Sbjct: 20 gccggtctccagttccccgtcggccgcatcgctcgcttcctcaa 63
>gb|AL374517.1|AL374517 MtBB07A08R2 MtBB Medicago truncatula cDNA clone MtBB07A08 T7, mRNA
sequence
Length = 549
Score = 40.1 bits (20), Expect = 0.31
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 168 gccggcctccagttccccgtaggccgtatcggccgctacctcaa 211
||||| |||||||||||||| ||||| |||| |||| ||||||
Sbjct: 17 gccggtctccagttccccgtcggccgcatcgctcgcttcctcaa 60
>gb|AL379555.1|AL379555 MtBB46A06F1 MtBB Medicago truncatula cDNA clone MtBB46A06 T3, mRNA
sequence
Length = 379
Score = 40.1 bits (20), Expect = 0.31
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 168 gccggcctccagttccccgtaggccgtatcggccgctacctcaa 211
||||| |||||||||||||| ||||| |||| |||| ||||||
Sbjct: 116 gccggtctccagttccccgtcggccgcatcgctcgcttcctcaa 159
>gb|BI270503.1|BI270503 NF009G03FL1F1024 Developing flower Medicago truncatula cDNA clone
NF009G03FL 5', mRNA sequence
Length = 525
Score = 40.1 bits (20), Expect = 0.31
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 168 gccggcctccagttccccgtaggccgtatcggccgctacctcaa 211
||||| |||||||||||||| ||||| |||| |||| ||||||
Sbjct: 129 gccggtctccagttccccgtcggccgcatcgctcgcttcctcaa 172
>gb|CX540032.1|CX540032 s13dNF46A07GS049_463336 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 528
Score = 40.1 bits (20), Expect = 0.31
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 168 gccggcctccagttccccgtaggccgtatcggccgctacctcaa 211
||||| |||||||||||||| ||||| |||| |||| ||||||
Sbjct: 23 gccggtctccagttccccgtcggccgcatcgctcgcttcctcaa 66
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 144,321
Number of Sequences: 392609
Number of extensions: 144321
Number of successful extensions: 10350
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 10275
Number of HSP's gapped (non-prelim): 80
length of query: 887
length of database: 441,732,993
effective HSP length: 20
effective length of query: 867
effective length of database: 433,880,813
effective search space: 376174664871
effective search space used: 376174664871
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)