BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521919.2.1
(2729 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI308555.1|BI308555 EST529965 GPOD Medicago truncatula c... 98 5e-018
gb|AC170988.4| Medicago truncatula chromosome 7 clone mth2-... 96 2e-017
gb|CX530044.1|CX530044 s13dNF98E02MJ008_246124 Methyl Jasmo... 70 1e-009
>gb|BI308555.1|BI308555 EST529965 GPOD Medicago truncatula cDNA clone pGPOD-7O17 5' end,
mRNA sequence
Length = 689
Score = 97.6 bits (49), Expect = 5e-018
Identities = 130/157 (82%)
Strand = Plus / Minus
Query: 526 gaaatatactggtgatcagatgtcatgaattcatatttttgctcaagatgttgcattgcc 585
|||||||| ||||| ||||| ||||||| ||||| ||| || || || ||||| ||
Sbjct: 397 gaaatatattggtgctcagaaatcatgaaaccatatctttcttctaggtgctgcatagct 338
Query: 586 tgatcaaactcttgcataccatgatacctaagatagtctgcatcacccaggtcaaatctt 645
||||||| |||||||| |||||||| || ||||| ||||||||||||| |||||||||
Sbjct: 337 cgatcaaattcttgcattccatgatatcttagatattctgcatcacccaagtcaaatcta 278
Query: 646 cgacgacatttgtcataactgttgttattccctggaa 682
|| | ||||| |||||||||||||||||||| ||||
Sbjct: 277 cgcctgcatttatcataactgttgttattcccaggaa 241
Score = 97.6 bits (49), Expect = 5e-018
Identities = 151/185 (81%)
Strand = Plus / Minus
Query: 715 cttggaaaatctatccattcaggatgtccaaactcatttcccatgaaattaagatagccc 774
||||||||||| ||||| |||||||| || || ||||| ||||| ||||| | ||| ||
Sbjct: 208 cttggaaaatcgatccactcaggatggccgaattcattccccataaaatttaaataccct 149
Query: 775 tctcctcctaaacccattgtgataagtctaatcatcttatgtaatgctatcccacgatca 834
|| || || | ||||| || ||||| |||||||| || |||||||| || ||||||||
Sbjct: 148 tcaccaccaaggcccatagtaataagcctaatcattttgtgtaatgcaataccacgatcg 89
Query: 835 atggtaggagttgaaggtctatcgagggccatgaaatcatacatatccttgtccatcaac 894
|| |||||| || ||||| || | |||||||| ||||||||||||||||||||||||
Sbjct: 88 attagaggagtagatggtctgtctaaagccatgaagtcatacatatccttgtccatcaac 29
Query: 895 caaaa 899
|||||
Sbjct: 28 caaaa 24
>gb|AC170988.4| Medicago truncatula chromosome 7 clone mth2-53m12, *** SEQUENCING IN
PROGRESS ***
Length = 122501
Score = 95.6 bits (48), Expect = 2e-017
Identities = 105/124 (84%)
Strand = Plus / Minus
Query: 881 ccttgtccatcaaccaaaacgcaatagtcttgtcgccgactaatgcttgatcatgacttt 940
||||||||||||||||||| || | |||||||| || || || ||||| ||||||||||
Sbjct: 112555 ccttgtccatcaaccaaaatgctagtgtcttgtcaccaaccaaggcttggtcatgacttt 112496
Query: 941 cagcataagttacacacttctctaaccacctcctatttgtcagtgtgtgcacaatatcac 1000
|||||||| ||||| || |||| |||||| || |||||||||||||| || |||||||
Sbjct: 112495 cagcataaaccacacaattttctagccaccttctgtttgtcagtgtgtggactatatcac 112436
Query: 1001 ccat 1004
||||
Sbjct: 112435 ccat 112432
Score = 93.7 bits (47), Expect = 7e-017
Identities = 95/111 (85%)
Strand = Plus / Minus
Query: 1129 acatcttcaccaatggttacagcctcaggataaagtccatgaattagatcatttaccagc 1188
|||||||||||||| | ||||| |||||||| || |||||||| |||||||| || |||
Sbjct: 110835 acatcttcaccaattgaaacagcttcaggatagagcccatgaatgagatcattaacaagc 110776
Query: 1189 atcaagtaaaccactgcatctacatcggtggcaaagccaaaatactcattg 1239
|||| ||||||||| || || ||||| || ||||| |||||||||||||||
Sbjct: 110775 atcaggtaaaccacagcttcaacatcagttgcaaaaccaaaatactcattg 110725
Score = 89.7 bits (45), Expect = 1e-015
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 1273 tgagtgtacatcatggaggtcacaccatcaaaacggaaaccatcaaacttatattcctcg 1332
|||||||||||||| || || ||||||||||| || || ||||||||||||||||| ||
Sbjct: 103592 tgagtgtacatcattgatgtgacaccatcaaatcgaaacccatcaaacttatattcatcc 103533
Query: 1333 agccaccatctagcatt 1349
|||||||||||||||||
Sbjct: 103532 agccaccatctagcatt 103516
Score = 65.9 bits (33), Expect = 2e-008
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 1369 acttcccagttcccatagttaaataggcgagaatcccacatccagtgat 1417
||||||||| | ||||||||||| |||||||||||||||||||| ||||
Sbjct: 103393 acttcccagcttccatagttaaaaaggcgagaatcccacatccaatgat 103345
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 587 gatcaaactcttgcataccatgatacctaagatagtctgcatcaccc 633
||||||| |||||||| |||||||| || ||||| ||||||||||||
Sbjct: 115703 gatcaaattcttgcattccatgatatcttagatattctgcatcaccc 115657
Score = 50.1 bits (25), Expect = 0.001
Identities = 79/97 (81%)
Strand = Plus / Minus
Query: 787 cccattgtgataagtctaatcatcttatgtaatgctatcccacgatcaatggtaggagtt 846
||||| || ||||| |||||||| || |||||||| || |||||||| || ||||||
Sbjct: 113033 cccatagtaataagcctaatcattttgtgtaatgcaataccacgatcgattagaggagta 112974
Query: 847 gaaggtctatcgagggccatgaaatcatacatatcct 883
|| ||||| || | |||||||| |||||||||||||
Sbjct: 112973 gatggtctgtctaaagccatgaagtcatacatatcct 112937
Score = 50.1 bits (25), Expect = 0.001
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 1030 agaaggtcaatccatttgtcagccacagccatatgcatccgatagtcaaaacctacccca 1089
|||||||||||||| ||||| || || |||||||||| ||||||| ||| || | ||||
Sbjct: 111124 agaaggtcaatccacttgtctgcaacggccatatgcaagcgatagttaaagccaatccca 111065
Query: 1090 ccatc 1094
|||||
Sbjct: 111064 ccatc 111060
Score = 46.1 bits (23), Expect = 0.016
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 652 catttgtcataactgttgttattccctggaa 682
||||| |||||||||||||||||||| ||||
Sbjct: 113304 catttatcataactgttgttattcccaggaa 113274
Score = 44.1 bits (22), Expect = 0.062
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 1744 gggctactcattccgacatgtgtttcatatatcc 1777
|||||||||||||| ||||||| ||||||||||
Sbjct: 101624 gggctactcattccaacatgtgcctcatatatcc 101591
Score = 42.1 bits (21), Expect = 0.25
Identities = 63/77 (81%)
Strand = Plus / Minus
Query: 1942 acctttacacgagatccatgaggaataggtgatgtaccatctgcattgttaggcagaaaa 2001
||||| || ||||| ||||||||||| |||| || |||||| ||||| || |||| ||
Sbjct: 98922 accttgactcgagaaccatgaggaattggtggtgaaccatcggcattatttggcaagaag 98863
Query: 2002 atttcccaaacaccaaa 2018
|| ||||| ||||||||
Sbjct: 98862 atctcccacacaccaaa 98846
>gb|CX530044.1|CX530044 s13dNF98E02MJ008_246124 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 573
Score = 69.9 bits (35), Expect = 1e-009
Identities = 98/119 (82%)
Strand = Plus / Minus
Query: 526 gaaatatactggtgatcagatgtcatgaattcatatttttgctcaagatgttgcattgcc 585
|||||||| ||||| ||||| ||||||| ||||| ||| || || || ||||| ||
Sbjct: 148 gaaatatattggtgctcagaaatcatgaaaccatatctttcttctaggtgctgcatagct 89
Query: 586 tgatcaaactcttgcataccatgatacctaagatagtctgcatcacccaggtcaaatct 644
||||||| |||||||| |||||||| || ||||| ||||||||||||| |||||||||
Sbjct: 88 cgatcaaattcttgcattccatgatatcttagatattctgcatcacccaagtcaaatct 30
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 650,526
Number of Sequences: 392609
Number of extensions: 650526
Number of successful extensions: 47348
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47312
Number of HSP's gapped (non-prelim): 35
length of query: 2729
length of database: 441,732,993
effective HSP length: 20
effective length of query: 2709
effective length of database: 433,880,813
effective search space: 1175383122417
effective search space used: 1175383122417
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)