BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521918.2.1
(417 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF004313.1|BF004313 EST432811 KV1 Medicago truncatula cD... 58 6e-007
gb|AJ498887.1|AJ498887 AJ498887 MTPOSE Medicago truncatula ... 58 6e-007
gb|CA989587.1|CA989587 EST643095 GLSD Medicago truncatula c... 58 6e-007
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 50 1e-004
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 50 1e-004
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 50 1e-004
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 50 1e-004
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 50 1e-004
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 48 6e-004
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 48 6e-004
gb|AJ499720.1|AJ499720 AJ499720 MTGIM Medicago truncatula c... 46 0.002
gb|AJ500295.1|AJ500295 AJ500295 MTGIM Medicago truncatula c... 44 0.009
gb|AJ500529.1|AJ500529 AJ500529 MTGIM Medicago truncatula c... 44 0.009
gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula c... 44 0.009
gb|AJ499175.1|AJ499175 AJ499175 MTGIM Medicago truncatula c... 44 0.009
gb|AJ499517.1|AJ499517 AJ499517 MTGIM Medicago truncatula c... 44 0.009
gb|AJ499942.1|AJ499942 AJ499942 MTGIM Medicago truncatula c... 44 0.009
emb|CR298372.1| mte1-15L2RM1 BAC end, cultivar Jemalong A17... 42 0.036
gb|AJ500122.1|AJ500122 AJ500122 MTGIM Medicago truncatula c... 42 0.036
gb|AJ499278.1|AJ499278 AJ499278 MTGIM Medicago truncatula c... 42 0.036
gb|AJ499442.1|AJ499442 AJ499442 MTGIM Medicago truncatula c... 42 0.036
gb|AJ499829.1|AJ499829 AJ499829 MTGIM Medicago truncatula c... 42 0.036
gb|AJ499861.1|AJ499861 AJ499861 MTGIM Medicago truncatula c... 42 0.036
gb|AJ499990.1|AJ499990 AJ499990 MTGIM Medicago truncatula c... 42 0.036
gb|AC144484.5| Medicago truncatula clone mth2-30o16, comple... 42 0.036
gb|AC152818.17| Medicago truncatula clone mth2-85g12, compl... 42 0.036
gb|AJ500088.1|AJ500088 AJ500088 MTGIM Medicago truncatula c... 40 0.14
gb|AJ500185.1|AJ500185 AJ500185 MTGIM Medicago truncatula c... 40 0.14
gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula c... 40 0.14
gb|AJ499379.1|AJ499379 AJ499379 MTGIM Medicago truncatula c... 40 0.14
gb|AJ499414.1|AJ499414 AJ499414 MTGIM Medicago truncatula c... 40 0.14
gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula c... 40 0.14
>gb|BF004313.1|BF004313 EST432811 KV1 Medicago truncatula cDNA clone pKV1-17C18, mRNA
sequence
Length = 528
Score = 58.0 bits (29), Expect = 6e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 98 aatctggaactgagcaacaccaacgttgttgatcataccacacac 142
||||| ||||||||||| || || |||||||||||||||||||||
Sbjct: 452 aatctagaactgagcaatacaaatgttgttgatcataccacacac 496
>gb|AJ498887.1|AJ498887 AJ498887 MTPOSE Medicago truncatula cDNA clone mt--acc955209g07,
mRNA sequence
Length = 624
Score = 58.0 bits (29), Expect = 6e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 98 aatctggaactgagcaacaccaacgttgttgatcataccacacac 142
||||| ||||||||||| || || |||||||||||||||||||||
Sbjct: 549 aatctagaactgagcaatacaaatgttgttgatcataccacacac 593
>gb|CA989587.1|CA989587 EST643095 GLSD Medicago truncatula cDNA clone pGLSD-42G5, mRNA
sequence
Length = 571
Score = 58.0 bits (29), Expect = 6e-007
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 98 aatctggaactgagcaacaccaacgttgttgatcataccacacac 142
||||| ||||||||||| || || |||||||||||||||||||||
Sbjct: 246 aatctagaactgagcaatacaaatgttgttgatcataccacacac 290
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcga 416
|||||||||||||||||||||||||
Sbjct: 299 agtacctgcccgggcggccgctcga 323
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||||
Sbjct: 45 gtacctgcccgggcggccgctcgaa 21
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||||
Sbjct: 290 gtacctgcccgggcggccgctcgaa 314
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 392 agtacctgcccgggcggccgctcga 416
|||||||||||||||||||||||||
Sbjct: 340 agtacctgcccgggcggccgctcga 316
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs470, mRNA sequence
Length = 1151
Score = 50.1 bits (25), Expect = 1e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||||||||||||
Sbjct: 297 gtacctgcccgggcggccgctcgaa 273
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccgctcga 416
||||||||||||||||||||||||
Sbjct: 204 gtacctgcccgggcggccgctcga 227
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgctcga 416
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AJ499720.1|AJ499720 AJ499720 MTGIM Medicago truncatula cDNA clone mtgmacc120007f12,
mRNA sequence
Length = 374
Score = 46.1 bits (23), Expect = 0.002
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcgaa 417
||||||||||||||||| ||||||||
Sbjct: 349 agtacctgcccgggcggncgctcgaa 374
>gb|AJ500295.1|AJ500295 AJ500295 MTGIM Medicago truncatula cDNA clone mtgmacc120014h01,
mRNA sequence
Length = 611
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 392 agtacctgcccgggcggccgctcgaa 417
||||||||||||| ||||||||||||
Sbjct: 34 agtacctgcccggccggccgctcgaa 9
>gb|AJ500529.1|AJ500529 AJ500529 MTGIM Medicago truncatula cDNA clone mtgmacc120017d07,
mRNA sequence
Length = 557
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcgaa 417
||||||||||||| ||||||||||||
Sbjct: 532 agtacctgcccggacggccgctcgaa 557
>gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula cDNA clone mtgmacc120019c06,
mRNA sequence
Length = 451
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcgaa 417
|||||||||||||||||||| |||||
Sbjct: 426 agtacctgcccgggcggccgttcgaa 451
>gb|AJ499175.1|AJ499175 AJ499175 MTGIM Medicago truncatula cDNA clone mtgmacc120001a07,
mRNA sequence
Length = 366
Score = 44.1 bits (22), Expect = 0.009
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||| ||||||||
Sbjct: 342 gtacctgcccgggcggncgctcgaa 366
>gb|AJ499517.1|AJ499517 AJ499517 MTGIM Medicago truncatula cDNA clone mtgmacc120005b12,
mRNA sequence
Length = 321
Score = 44.1 bits (22), Expect = 0.009
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcgaa 417
||||||||||||||||| ||||||||
Sbjct: 296 agtacctgcccgggcggacgctcgaa 321
>gb|AJ499942.1|AJ499942 AJ499942 MTGIM Medicago truncatula cDNA clone mtgmacc120010e04,
mRNA sequence
Length = 527
Score = 44.1 bits (22), Expect = 0.009
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 392 agtacctgcccgggcggccgctcga 416
||||||||||||||||| |||||||
Sbjct: 503 agtacctgcccgggcggncgctcga 527
>emb|CR298372.1| mte1-15L2RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 340
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 122 gttgttgatcataccacacac 142
|||||||||||||||||||||
Sbjct: 123 gttgttgatcataccacacac 143
>gb|AJ500122.1|AJ500122 AJ500122 MTGIM Medicago truncatula cDNA clone mtgmacc120013a03,
mRNA sequence
Length = 596
Score = 42.1 bits (21), Expect = 0.036
Identities = 31/33 (93%), Gaps = 1/33 (3%)
Strand = Plus / Minus
Query: 384 tgattatcagtacctgcccgggcggccgctcga 416
||||||| ||||||||||| |||||||||||||
Sbjct: 32 tgattattagtacctgccc-ggcggccgctcga 1
>gb|AJ499278.1|AJ499278 AJ499278 MTGIM Medicago truncatula cDNA clone mtgmacc120002b11,
mRNA sequence
Length = 438
Score = 42.1 bits (21), Expect = 0.036
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||| ||||||||
Sbjct: 414 gtacctgcccgggcggtcgctcgaa 438
>gb|AJ499442.1|AJ499442 AJ499442 MTGIM Medicago truncatula cDNA clone mtgmacc120004c11,
mRNA sequence
Length = 430
Score = 42.1 bits (21), Expect = 0.036
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||| ||||||||
Sbjct: 406 gtacctgcccgggcggacgctcgaa 430
>gb|AJ499829.1|AJ499829 AJ499829 MTGIM Medicago truncatula cDNA clone mtgmacc120009a05,
mRNA sequence
Length = 298
Score = 42.1 bits (21), Expect = 0.036
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 392 agtacctgcccgggcggccgctcga 416
|||||||||||||||| ||||||||
Sbjct: 25 agtacctgcccgggcgcccgctcga 1
>gb|AJ499861.1|AJ499861 AJ499861 MTGIM Medicago truncatula cDNA clone mtgmacc120009d11,
mRNA sequence
Length = 617
Score = 42.1 bits (21), Expect = 0.036
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 388 tatcagtacctgcccgggcggccgctcga 416
||||||||||||||| |||||||||||||
Sbjct: 28 tatcagtacctgccc-ggcggccgctcga 1
>gb|AJ499990.1|AJ499990 AJ499990 MTGIM Medicago truncatula cDNA clone mtgmacc120011b09,
mRNA sequence
Length = 314
Score = 42.1 bits (21), Expect = 0.036
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 393 gtacctgcccgggcggccgctcgaa 417
|||||||||||||||| ||||||||
Sbjct: 290 gtacctgcccgggcggacgctcgaa 314
>gb|AC144484.5| Medicago truncatula clone mth2-30o16, complete sequence
Length = 121144
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 122 gttgttgatcataccacacac 142
|||||||||||||||||||||
Sbjct: 51936 gttgttgatcataccacacac 51916
>gb|AC152818.17| Medicago truncatula clone mth2-85g12, complete sequence
Length = 142154
Score = 42.1 bits (21), Expect = 0.036
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 122 gttgttgatcataccacacac 142
|||||||||||||||||||||
Sbjct: 51940 gttgttgatcataccacacac 51920
>gb|AJ500088.1|AJ500088 AJ500088 MTGIM Medicago truncatula cDNA clone mtgmacc120012e05,
mRNA sequence
Length = 114
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgctcga 416
||||||||||||||| ||||||||
Sbjct: 24 gtacctgcccgggcgcccgctcga 1
>gb|AJ500185.1|AJ500185 AJ500185 MTGIM Medicago truncatula cDNA clone mtgmacc120013f07,
mRNA sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgctcga 416
|||||||||||||| |||||||||
Sbjct: 24 gtacctgcccgggcagccgctcga 1
>gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula cDNA clone mtgmacc120015e03,
mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.14
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 392 agtacctgcccgggcggccg 411
||||||||||||||||||||
Sbjct: 20 agtacctgcccgggcggccg 1
>gb|AJ499379.1|AJ499379 AJ499379 MTGIM Medicago truncatula cDNA clone mtgmacc120003d12,
mRNA sequence
Length = 301
Score = 40.1 bits (20), Expect = 0.14
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 389 atcagtacctgcccgggcggccgctcga 416
|||||||||||||| |||||||||||||
Sbjct: 27 atcagtacctgccc-ggcggccgctcga 1
>gb|AJ499414.1|AJ499414 AJ499414 MTGIM Medicago truncatula cDNA clone mtgmacc120004a05,
mRNA sequence
Length = 360
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgctcga 416
||||||||||||||| ||||||||
Sbjct: 24 gtacctgcccgggcgcccgctcga 1
>gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula cDNA clone mtgmacc120004f05,
mRNA sequence
Length = 128
Score = 40.1 bits (20), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 393 gtacctgcccgggcggccgctcga 416
||||||||||||||||||| ||||
Sbjct: 24 gtacctgcccgggcggccgttcga 1
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 97,583
Number of Sequences: 392609
Number of extensions: 97583
Number of successful extensions: 6685
Number of sequences better than 0.5: 32
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6648
Number of HSP's gapped (non-prelim): 37
length of query: 417
length of database: 441,732,993
effective HSP length: 19
effective length of query: 398
effective length of database: 434,273,422
effective search space: 172840821956
effective search space used: 172840821956
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)