BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2521686.2.1
         (2104 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR485472.1|  mth2-154O2RM2 BAC end, cultivar Jemalong A1...    44   0.048
gb|AC139748.11|  Medicago truncatula clone mth2-15o24, compl...    42   0.19 
gb|AC156012.19|  Medicago truncatula clone mth2-168l11, WORK...    42   0.19 

>emb|CR485472.1| mth2-154O2RM2 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 720

 Score = 44.1 bits (22), Expect = 0.048
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                         
Query: 712 atcgtgggttatggcccacatattcaccat 741
           ||||||||||||||||||||| || |||||
Sbjct: 627 atcgtgggttatggcccacatgttgaccat 656



>gb|AC139748.11| Medicago truncatula clone mth2-15o24, complete sequence
          Length = 144219

 Score = 42.1 bits (21), Expect = 0.19
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Minus

                                              
Query: 39    taatcacattaca-atacatatatatgtatata 70
             ||||||||||||| |||||||||||| ||||||
Sbjct: 88895 taatcacattacatatacatatatatatatata 88863



>gb|AC156012.19| Medicago truncatula clone mth2-168l11, WORKING DRAFT SEQUENCE, 2 ordered
              pieces
          Length = 108013

 Score = 42.1 bits (21), Expect = 0.19
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Plus

                                               
Query: 39     taatcacattaca-atacatatatatgtatata 70
              ||||||||||||| |||||||||||| ||||||
Sbjct: 104173 taatcacattacatatacatatatatatatata 104205



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 207,290
Number of Sequences: 392609
Number of extensions: 207290
Number of successful extensions: 16255
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 16242
Number of HSP's gapped (non-prelim): 13
length of query: 2104
length of database: 441,732,993
effective HSP length: 20
effective length of query: 2084
effective length of database: 433,880,813
effective search space: 904207614292
effective search space used: 904207614292
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)