BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521569.2.1
(887 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW690621.2|AW690621 NF036F01ST1F1000 Developing stem Med... 54 2e-005
gb|AC170856.1| Medicago truncatula chromosome 2 clone mth2-... 54 2e-005
gb|BF649475.1|BF649475 NF080E09EC1F1070 Elicited cell cultu... 42 0.079
gb|AJ503994.1|AJ503994 AJ503994 MTAMP Medicago truncatula c... 42 0.079
gb|AC149809.10| Medicago truncatula clone mth2-154h8, compl... 42 0.079
>gb|AW690621.2|AW690621 NF036F01ST1F1000 Developing stem Medicago truncatula cDNA clone
NF036F01ST 5', mRNA sequence
Length = 425
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 448 gtctccagcatgtccaggccggcttggttggcaaaggtgaacacggg 494
|||||||||||||| || || || ||||||||||| |||||||||||
Sbjct: 383 gtctccagcatgtcaagccctgcctggttggcaaaagtgaacacggg 337
>gb|AC170856.1| Medicago truncatula chromosome 2 clone mth2-13d14, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 101063
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 448 gtctccagcatgtccaggccggcttggttggcaaaggtgaacacggg 494
|||||||||||||| || || || ||||||||||| |||||||||||
Sbjct: 70837 gtctccagcatgtcaagccctgcctggttggcaaaagtgaacacggg 70883
>gb|BF649475.1|BF649475 NF080E09EC1F1070 Elicited cell culture Medicago truncatula cDNA
clone NF080E09EC 5', mRNA sequence
Length = 619
Score = 42.1 bits (21), Expect = 0.079
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 717 cctctgcaccgatgccaccac 737
|||||||||||||||||||||
Sbjct: 151 cctctgcaccgatgccaccac 171
>gb|AJ503994.1|AJ503994 AJ503994 MTAMP Medicago truncatula cDNA clone mtgmadc120041a02,
mRNA sequence
Length = 587
Score = 42.1 bits (21), Expect = 0.079
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 717 cctctgcaccgatgccaccac 737
|||||||||||||||||||||
Sbjct: 126 cctctgcaccgatgccaccac 146
>gb|AC149809.10| Medicago truncatula clone mth2-154h8, complete sequence
Length = 98053
Score = 42.1 bits (21), Expect = 0.079
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 717 cctctgcaccgatgccaccac 737
|||||||||||||||||||||
Sbjct: 58986 cctctgcaccgatgccaccac 59006
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 109,059
Number of Sequences: 392609
Number of extensions: 109059
Number of successful extensions: 6437
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6429
Number of HSP's gapped (non-prelim): 8
length of query: 887
length of database: 441,732,993
effective HSP length: 20
effective length of query: 867
effective length of database: 433,880,813
effective search space: 376174664871
effective search space used: 376174664871
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)