BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521502.2.2
(1862 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR349284.1| mte1-83F4FM1 BAC end, cultivar Jemalong A17... 46 0.011
gb|AW736702.1|AW736702 EST333194 KV3 Medicago truncatula cD... 46 0.011
gb|BE943299.1|BE943299 EST422878 MGHG Medicago truncatula c... 46 0.011
gb|CX539437.1|CX539437 s13dNF70H11GS092_462134 Germinating ... 46 0.011
gb|AC140545.26| Medicago truncatula clone mth2-11g18, compl... 46 0.011
gb|AA660947.1|AA660947 00844 MtRHE Medicago truncatula cDNA... 44 0.042
gb|BE997739.1|BE997739 EST429462 GVSN Medicago truncatula c... 44 0.042
gb|BE998190.1|BE998190 EST429913 GVSN Medicago truncatula c... 44 0.042
gb|BE998593.1|BE998593 EST430316 GVSN Medicago truncatula c... 44 0.042
gb|BE999921.1|BE999921 EST431644 GVSN Medicago truncatula c... 44 0.042
emb|CR513203.1| mth4-42K7FM2 BAC end, cultivar Jemalong A17... 42 0.17
gb|BG648109.1|BG648109 EST509728 HOGA Medicago truncatula c... 42 0.17
gb|BI271118.1|BI271118 NF005C08FL1F1066 Developing flower M... 42 0.17
gb|BQ123819.1|BQ123819 EST609395 GLSD Medicago truncatula c... 42 0.17
gb|BQ124314.1|BQ124314 EST609890 GLSD Medicago truncatula c... 42 0.17
gb|CA917552.1|CA917552 EST641699 GPOD Medicago truncatula c... 42 0.17
gb|AC144344.14| Medicago truncatula clone mth2-8c18, WORKIN... 42 0.17
>emb|CR349284.1| mte1-83F4FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 713
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1247 atctggttgatgccttccacagctgctattgttgagaaagcccaaca 1293
|||| |||||||||||| |||||||| | || |||||| ||||||||
Sbjct: 438 atcttgttgatgccttctacagctgccactgctgagaatgcccaaca 484
>gb|AW736702.1|AW736702 EST333194 KV3 Medicago truncatula cDNA clone pKV3-21M21, mRNA
sequence
Length = 489
Score = 46.1 bits (23), Expect = 0.011
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1265 acagctgctattgttgagaaagcccaacagctccc 1299
|||||||| ||||||||||| |||||||| |||||
Sbjct: 489 acagctgcgattgttgagaatgcccaacaactccc 455
>gb|BE943299.1|BE943299 EST422878 MGHG Medicago truncatula cDNA clone pMGHG-15I8, mRNA
sequence
Length = 540
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1137 gatgaactcaaacgcatagtccatcagacctccattgca 1175
|||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 178 gatgaattcaaaggcatagtccatgagaccaccattgca 140
>gb|CX539437.1|CX539437 s13dNF70H11GS092_462134 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 493
Score = 46.1 bits (23), Expect = 0.011
Identities = 35/39 (89%)
Strand = Plus / Minus
Query: 1137 gatgaactcaaacgcatagtccatcagacctccattgca 1175
|||||| ||||| ||||||||||| ||||| ||||||||
Sbjct: 204 gatgaattcaaaggcatagtccatgagaccaccattgca 166
>gb|AC140545.26| Medicago truncatula clone mth2-11g18, complete sequence
Length = 129414
Score = 46.1 bits (23), Expect = 0.011
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 1247 atctggttgatgccttccacagctgctattgttgagaaagcccaaca 1293
|||| |||||||||||| |||||||| | || |||||| ||||||||
Sbjct: 92638 atcttgttgatgccttctacagctgccactgctgagaatgcccaaca 92684
>gb|AA660947.1|AA660947 00844 MtRHE Medicago truncatula cDNA 5' similar to cysteine
proteinase; thiolprotease, mRNA sequence
Length = 686
Score = 44.1 bits (22), Expect = 0.042
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 1259 ccttccacagctgctattgttgagaaagcccaacagctccc 1299
||||| |||||||| |||| |||||| |||||||| |||||
Sbjct: 552 ccttcaacagctgcgattgntgagaatgcccaacaactccc 512
>gb|BE997739.1|BE997739 EST429462 GVSN Medicago truncatula cDNA clone pGVSN-4C9, mRNA
sequence
Length = 563
Score = 44.1 bits (22), Expect = 0.042
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1452 actcgtcgttggtgaggtcggc 1473
||||||||||||||||||||||
Sbjct: 265 actcgtcgttggtgaggtcggc 244
>gb|BE998190.1|BE998190 EST429913 GVSN Medicago truncatula cDNA clone pGVSN-9G9, mRNA
sequence
Length = 538
Score = 44.1 bits (22), Expect = 0.042
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1452 actcgtcgttggtgaggtcggc 1473
||||||||||||||||||||||
Sbjct: 280 actcgtcgttggtgaggtcggc 259
>gb|BE998593.1|BE998593 EST430316 GVSN Medicago truncatula cDNA clone pGVSN-12M18, mRNA
sequence
Length = 714
Score = 44.1 bits (22), Expect = 0.042
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1452 actcgtcgttggtgaggtcggc 1473
||||||||||||||||||||||
Sbjct: 334 actcgtcgttggtgaggtcggc 313
>gb|BE999921.1|BE999921 EST431644 GVSN Medicago truncatula cDNA clone pGVSN-24P16, mRNA
sequence
Length = 596
Score = 44.1 bits (22), Expect = 0.042
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1452 actcgtcgttggtgaggtcggc 1473
||||||||||||||||||||||
Sbjct: 338 actcgtcgttggtgaggtcggc 317
>emb|CR513203.1| mth4-42K7FM2 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 656
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1706 aggaggagcagcagcagcagc 1726
|||||||||||||||||||||
Sbjct: 568 aggaggagcagcagcagcagc 588
>gb|BG648109.1|BG648109 EST509728 HOGA Medicago truncatula cDNA clone pHOGA-18J2 5' end, mRNA
sequence
Length = 701
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1706 aggaggagcagcagcagcagc 1726
|||||||||||||||||||||
Sbjct: 659 aggaggagcagcagcagcagc 639
>gb|BI271118.1|BI271118 NF005C08FL1F1066 Developing flower Medicago truncatula cDNA clone
NF005C08FL 5', mRNA sequence
Length = 454
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1706 aggaggagcagcagcagcagc 1726
|||||||||||||||||||||
Sbjct: 443 aggaggagcagcagcagcagc 423
>gb|BQ123819.1|BQ123819 EST609395 GLSD Medicago truncatula cDNA clone pGLSD-33B23, mRNA
sequence
Length = 752
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1706 aggaggagcagcagcagcagc 1726
|||||||||||||||||||||
Sbjct: 321 aggaggagcagcagcagcagc 301
>gb|BQ124314.1|BQ124314 EST609890 GLSD Medicago truncatula cDNA clone pGLSD-34P20, mRNA
sequence
Length = 632
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1706 aggaggagcagcagcagcagc 1726
|||||||||||||||||||||
Sbjct: 324 aggaggagcagcagcagcagc 304
>gb|CA917552.1|CA917552 EST641699 GPOD Medicago truncatula cDNA clone GPOD-36F7, mRNA
sequence
Length = 513
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1706 aggaggagcagcagcagcagc 1726
|||||||||||||||||||||
Sbjct: 395 aggaggagcagcagcagcagc 375
>gb|AC144344.14| Medicago truncatula clone mth2-8c18, WORKING DRAFT SEQUENCE, 12
unordered pieces
Length = 83825
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1706 aggaggagcagcagcagcagc 1726
|||||||||||||||||||||
Sbjct: 46907 aggaggagcagcagcagcagc 46887
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 238,257
Number of Sequences: 392609
Number of extensions: 238257
Number of successful extensions: 21036
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20983
Number of HSP's gapped (non-prelim): 53
length of query: 1862
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1842
effective length of database: 433,880,813
effective search space: 799208457546
effective search space used: 799208457546
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)