BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521459.2.1
(892 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE204353.1|BE204353 EST397029 KV0 Medicago truncatula cD... 60 3e-007
gb|BE204680.1|BE204680 EST397356 KV0 Medicago truncatula cD... 60 3e-007
gb|BG645286.1|BG645286 EST506905 KV3 Medicago truncatula cD... 60 3e-007
gb|BI309056.1|BI309056 EST530466 GPOD Medicago truncatula c... 60 3e-007
gb|BI309356.1|BI309356 EST530766 GPOD Medicago truncatula c... 60 3e-007
gb|CX524396.1|CX524396 s13dNF15C11AT084_448136 Aphid-Infect... 60 3e-007
gb|BM780235.1|BM780235 EST590811 KV2 Medicago truncatula cD... 46 0.005
gb|CA923174.1|CA923174 EST640892 MTUS Medicago truncatula c... 42 0.079
gb|CA923195.1|CA923195 EST640913 MTUS Medicago truncatula c... 42 0.079
gb|CG947795.1|CG947795 MBEII44TR mth2 Medicago truncatula g... 40 0.31
gb|CA919619.1|CA919619 EST637337 MTUS Medicago truncatula c... 40 0.31
>gb|BE204353.1|BE204353 EST397029 KV0 Medicago truncatula cDNA clone pKV0-15B16, mRNA
sequence
Length = 657
Score = 60.0 bits (30), Expect = 3e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 395 tctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggagatac 454
|||||||| ||||| || || || |||||||| ||||| ||||| ||||||| ||||||
Sbjct: 341 tctttggtagaatacatggtcagggaaactgagaagcttcatgccaaggttggtagatac 400
Query: 455 aagagcccagatga 468
|||||||| |||||
Sbjct: 401 aagagccctgatga 414
>gb|BE204680.1|BE204680 EST397356 KV0 Medicago truncatula cDNA clone pKV0-17G21, mRNA
sequence
Length = 565
Score = 60.0 bits (30), Expect = 3e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 395 tctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggagatac 454
|||||||| ||||| || || || |||||||| ||||| ||||| ||||||| ||||||
Sbjct: 348 tctttggtagaatacatggtcagggaaactgagaagcttcatgccaaggttggtagatac 407
Query: 455 aagagcccagatga 468
|||||||| |||||
Sbjct: 408 aagagccctgatga 421
>gb|BG645286.1|BG645286 EST506905 KV3 Medicago truncatula cDNA clone pKV3-39D20 5' end,
mRNA sequence
Length = 749
Score = 60.0 bits (30), Expect = 3e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 395 tctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggagatac 454
|||||||| ||||| || || || |||||||| ||||| ||||| ||||||| ||||||
Sbjct: 348 tctttggtagaatacatggtcagggaaactgagaagcttcatgccaaggttggtagatac 407
Query: 455 aagagcccagatga 468
|||||||| |||||
Sbjct: 408 aagagccctgatga 421
>gb|BI309056.1|BI309056 EST530466 GPOD Medicago truncatula cDNA clone pGPOD-10D23 5' end,
mRNA sequence
Length = 589
Score = 60.0 bits (30), Expect = 3e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 395 tctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggagatac 454
|||||||| ||||| || || || |||||||| ||||| ||||| ||||||| ||||||
Sbjct: 509 tctttggtagaatacatggtcagggaaactgagaagcttcatgccaaggttggtagatac 568
Query: 455 aagagcccagatga 468
|||||||| |||||
Sbjct: 569 aagagccctgatga 582
>gb|BI309356.1|BI309356 EST530766 GPOD Medicago truncatula cDNA clone pGPOD-11O18 5' end,
mRNA sequence
Length = 567
Score = 60.0 bits (30), Expect = 3e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 395 tctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggagatac 454
|||||||| ||||| || || || |||||||| ||||| ||||| ||||||| ||||||
Sbjct: 159 tctttggtagaatacatggtcagggaaactgagaagcttcatgccaaggttggtagatac 218
Query: 455 aagagcccagatga 468
|||||||| |||||
Sbjct: 219 aagagccctgatga 232
Score = 40.1 bits (20), Expect = 0.31
Identities = 53/64 (82%)
Strand = Plus / Plus
Query: 665 tgcttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagttt 724
||||||||||| ||||| | || ||||| ||||| || ||||| || |||||||| |||
Sbjct: 429 tgcttgcaggctctctcaaagagaatccattatggcaaatttgttgctgaggccaaattt 488
Query: 725 caag 728
||||
Sbjct: 489 caag 492
>gb|CX524396.1|CX524396 s13dNF15C11AT084_448136 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 554
Score = 60.0 bits (30), Expect = 3e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 395 tctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggagatac 454
|||||||| ||||| || || || |||||||| ||||| ||||| ||||||| ||||||
Sbjct: 378 tctttggtagaatacatggtcagggaaactgagaagcttcatgccaaggttggtagatac 437
Query: 455 aagagcccagatga 468
|||||||| |||||
Sbjct: 438 aagagccctgatga 451
>gb|BM780235.1|BM780235 EST590811 KV2 Medicago truncatula cDNA clone pKV2-54M6, mRNA
sequence
Length = 818
Score = 46.1 bits (23), Expect = 0.005
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 395 tctttggttgaatatatagttagagaaactgaaaagctccatgcacaggttgggagatac 454
|||||||| ||||| || || || |||||||| ||||| || || ||||||| ||||||
Sbjct: 810 tctttggtagaatacatggtcagggaaactgagaagcttcaagccaaggttggtagatac 751
Query: 455 aagagcc 461
|||||||
Sbjct: 750 aagagcc 744
Score = 40.1 bits (20), Expect = 0.31
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 665 tgcttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagttt 724
||||||||||| ||||| | || ||||| ||||| || ||||| || |||||||| |||
Sbjct: 538 tgcttgcaggctctctcaaagagaatccattatggcaaatttgttgctgaggccaaattt 479
Query: 725 caag 728
||||
Sbjct: 478 caag 475
>gb|CA923174.1|CA923174 EST640892 MTUS Medicago truncatula cDNA clone MTUS-64A11, mRNA
sequence
Length = 704
Score = 42.1 bits (21), Expect = 0.079
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 689 atccactatgggaagtttgtggcagaggccaagtttcaaga 729
||||||||||| || ||||| || ||||| |||||||||||
Sbjct: 564 atccactatggtaaatttgttgctgaggcaaagtttcaaga 524
>gb|CA923195.1|CA923195 EST640913 MTUS Medicago truncatula cDNA clone MTUS-64D12, mRNA
sequence
Length = 803
Score = 42.1 bits (21), Expect = 0.079
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 689 atccactatgggaagtttgtggcagaggccaagtttcaaga 729
||||||||||| || ||||| || ||||| |||||||||||
Sbjct: 565 atccactatggtaaatttgttgctgaggcaaagtttcaaga 525
>gb|CG947795.1|CG947795 MBEII44TR mth2 Medicago truncatula genomic clone 62G15, DNA
sequence
Length = 875
Score = 40.1 bits (20), Expect = 0.31
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 441 aggttgggagatacaagagcccagatga 468
||||||| |||||||||||||| |||||
Sbjct: 340 aggttggtagatacaagagccctgatga 367
>gb|CA919619.1|CA919619 EST637337 MTUS Medicago truncatula cDNA clone MTUS-15H1, mRNA
sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.31
Identities = 53/64 (82%)
Strand = Plus / Minus
Query: 665 tgcttgcaggcactctccagaaggatccactatgggaagtttgtggcagaggccaagttt 724
||||||||||| ||||| | || ||||| ||||| || ||||| || |||||||| |||
Sbjct: 518 tgcttgcaggctctctcaaagagaatccattatggcaaatttgttgctgaggccaaattt 459
Query: 725 caag 728
||||
Sbjct: 458 caag 455
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 221,339
Number of Sequences: 392609
Number of extensions: 221339
Number of successful extensions: 18174
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18151
Number of HSP's gapped (non-prelim): 23
length of query: 892
length of database: 441,732,993
effective HSP length: 20
effective length of query: 872
effective length of database: 433,880,813
effective search space: 378344068936
effective search space used: 378344068936
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)