BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493976.2.1
(1294 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX523727.1|CX523727 s13dNF01C11AT086_336301 Aphid-Infect... 54 3e-005
gb|CX532546.1|CX532546 s13dNF73D08MJ062_271379 Methyl Jasmo... 54 3e-005
emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2... 54 3e-005
gb|BG455921.1|BG455921 NF071B09PL1F1075 Phosphate starved l... 40 0.46
gb|BG645759.1|BG645759 EST507378 KV3 Medicago truncatula cD... 40 0.46
gb|BI308198.1|BI308198 EST529608 GPOD Medicago truncatula c... 40 0.46
gb|BI308364.1|BI308364 EST529774 GPOD Medicago truncatula c... 40 0.46
gb|CA917661.1|CA917661 EST641808 GPOD Medicago truncatula c... 40 0.46
gb|CA917809.1|CA917809 EST641956 GPOD Medicago truncatula c... 40 0.46
gb|AJ500359.1|AJ500359 AJ500359 MTGIM Medicago truncatula c... 40 0.46
gb|AJ500361.1|AJ500361 AJ500361 MTGIM Medicago truncatula c... 40 0.46
gb|AJ499506.1|AJ499506 AJ499506 MTGIM Medicago truncatula c... 40 0.46
gb|AJ499937.1|AJ499937 AJ499937 MTGIM Medicago truncatula c... 40 0.46
gb|AC140030.6| Medicago truncatula clone mth2-7g24, complet... 40 0.46
gb|AC149039.2| Medicago truncatula chromosome 7 BAC clone m... 40 0.46
>gb|CX523727.1|CX523727 s13dNF01C11AT086_336301 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 198
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 197 gctcacgccaccttctacggcggcggcgatgcgtccggcaccatggg 243
|||||||||||||||||||||||| |||| || ||||| || |||||
Sbjct: 152 gctcacgccaccttctacggcggcagcgacgcctccggaacaatggg 198
>gb|CX532546.1|CX532546 s13dNF73D08MJ062_271379 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 605
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 197 gctcacgccaccttctacggcggcggcgatgcgtccggcaccatggg 243
|||||||||||||||||||||||| |||| || ||||| || |||||
Sbjct: 90 gctcacgccaccttctacggcggcagcgacgcctccggaacaatggg 136
>emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11, COMPLETE SEQUENCE
Length = 136557
Score = 54.0 bits (27), Expect = 3e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 197 gctcacgccaccttctacggcggcggcgatgcgtccggcaccatggg 243
|||||||||||||||||||||||| |||| || ||||| || |||||
Sbjct: 95004 gctcacgccaccttctacggcggcagcgacgcctccggaacaatggg 94958
>gb|BG455921.1|BG455921 NF071B09PL1F1075 Phosphate starved leaf Medicago truncatula cDNA
clone NF071B09PL 5', mRNA sequence
Length = 689
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaaca 746
|||||||| || ||||||||||||||||
Sbjct: 37 aactggggacaaaactggcagagcaaca 64
>gb|BG645759.1|BG645759 EST507378 KV3 Medicago truncatula cDNA clone pKV3-47B23 5' end,
mRNA sequence
Length = 731
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaaca 746
|||||||| || ||||||||||||||||
Sbjct: 440 aactggggacaaaactggcagagcaaca 467
>gb|BI308198.1|BI308198 EST529608 GPOD Medicago truncatula cDNA clone pGPOD-2M6 5' end,
mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaaca 746
|||||||| || ||||||||||||||||
Sbjct: 580 aactggggacaaaactggcagagcaaca 607
>gb|BI308364.1|BI308364 EST529774 GPOD Medicago truncatula cDNA clone pGPOD-2J22 5' end,
mRNA sequence
Length = 718
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaaca 746
|||||||| || ||||||||||||||||
Sbjct: 624 aactggggacaaaactggcagagcaaca 651
>gb|CA917661.1|CA917661 EST641808 GPOD Medicago truncatula cDNA clone GPOD-36L14, mRNA
sequence
Length = 727
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaaca 746
|||||||| || ||||||||||||||||
Sbjct: 592 aactggggacaaaactggcagagcaaca 619
>gb|CA917809.1|CA917809 EST641956 GPOD Medicago truncatula cDNA clone GPOD-37G20, mRNA
sequence
Length = 730
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaaca 746
|||||||| || ||||||||||||||||
Sbjct: 589 aactggggacaaaactggcagagcaaca 616
>gb|AJ500359.1|AJ500359 AJ500359 MTGIM Medicago truncatula cDNA clone mtgmacc120015e08,
mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 719 aactggggccagaactggcagagcaaca 746
|||||||| || ||||||||||||||||
Sbjct: 232 aactggggacaaaactggcagagcaaca 205
>gb|AJ500361.1|AJ500361 AJ500361 MTGIM Medicago truncatula cDNA clone mtgmacc120015e10,
mRNA sequence
Length = 415
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 719 aactggggccagaactggcagagcaaca 746
|||||||| || ||||||||||||||||
Sbjct: 232 aactggggacaaaactggcagagcaaca 205
>gb|AJ499506.1|AJ499506 AJ499506 MTGIM Medicago truncatula cDNA clone mtgmacc120005b01,
mRNA sequence
Length = 341
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 719 aactggggccagaactggcagagcaaca 746
|||||||| || ||||||||||||||||
Sbjct: 232 aactggggacaaaactggcagagcaaca 205
>gb|AJ499937.1|AJ499937 AJ499937 MTGIM Medicago truncatula cDNA clone mtgmacc120010d11,
mRNA sequence
Length = 581
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 719 aactggggccagaactggcagagcaaca 746
|||||||| || ||||||||||||||||
Sbjct: 404 aactggggacaaaactggcagagcaaca 431
>gb|AC140030.6| Medicago truncatula clone mth2-7g24, complete sequence
Length = 122057
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 719 aactggggccagaactggcagagcaaca 746
|||||||| || ||||||||||||||||
Sbjct: 66969 aactggggacaaaactggcagagcaaca 66942
>gb|AC149039.2| Medicago truncatula chromosome 7 BAC clone mth2-4g23, complete sequence
Length = 103199
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1241 taatgaatcttatcaagtta 1260
||||||||||||||||||||
Sbjct: 37913 taatgaatcttatcaagtta 37894
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 147,824
Number of Sequences: 392609
Number of extensions: 147824
Number of successful extensions: 9494
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9468
Number of HSP's gapped (non-prelim): 26
length of query: 1294
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1274
effective length of database: 433,880,813
effective search space: 552764155762
effective search space used: 552764155762
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)