BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2493976.2.1
         (1294 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CX523727.1|CX523727  s13dNF01C11AT086_336301 Aphid-Infect...    54   3e-005
gb|CX532546.1|CX532546  s13dNF73D08MJ062_271379 Methyl Jasmo...    54   3e-005
emb|CR962128.2|  Medicago truncatula chromosome 5 clone mth2...    54   3e-005
gb|BG455921.1|BG455921  NF071B09PL1F1075 Phosphate starved l...    40   0.46 
gb|BG645759.1|BG645759  EST507378 KV3 Medicago truncatula cD...    40   0.46 
gb|BI308198.1|BI308198  EST529608 GPOD Medicago truncatula c...    40   0.46 
gb|BI308364.1|BI308364  EST529774 GPOD Medicago truncatula c...    40   0.46 
gb|CA917661.1|CA917661  EST641808 GPOD Medicago truncatula c...    40   0.46 
gb|CA917809.1|CA917809  EST641956 GPOD Medicago truncatula c...    40   0.46 
gb|AJ500359.1|AJ500359  AJ500359 MTGIM Medicago truncatula c...    40   0.46 
gb|AJ500361.1|AJ500361  AJ500361 MTGIM Medicago truncatula c...    40   0.46 
gb|AJ499506.1|AJ499506  AJ499506 MTGIM Medicago truncatula c...    40   0.46 
gb|AJ499937.1|AJ499937  AJ499937 MTGIM Medicago truncatula c...    40   0.46 
gb|AC140030.6|  Medicago truncatula clone mth2-7g24, complet...    40   0.46 
gb|AC149039.2|  Medicago truncatula chromosome 7 BAC clone m...    40   0.46 
>gb|CX523727.1|CX523727 s13dNF01C11AT086_336301 Aphid-Infected Shoots Medicago truncatula
           cDNA, mRNA sequence
          Length = 198

 Score = 54.0 bits (27), Expect = 3e-005
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 197 gctcacgccaccttctacggcggcggcgatgcgtccggcaccatggg 243
           |||||||||||||||||||||||| |||| || ||||| || |||||
Sbjct: 152 gctcacgccaccttctacggcggcagcgacgcctccggaacaatggg 198
>gb|CX532546.1|CX532546 s13dNF73D08MJ062_271379 Methyl Jasmonate-Elicited Root Cell
           Suspension Culture Medicago truncatula cDNA, mRNA
           sequence
          Length = 605

 Score = 54.0 bits (27), Expect = 3e-005
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 197 gctcacgccaccttctacggcggcggcgatgcgtccggcaccatggg 243
           |||||||||||||||||||||||| |||| || ||||| || |||||
Sbjct: 90  gctcacgccaccttctacggcggcagcgacgcctccggaacaatggg 136
>emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11, COMPLETE SEQUENCE
          Length = 136557

 Score = 54.0 bits (27), Expect = 3e-005
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 197   gctcacgccaccttctacggcggcggcgatgcgtccggcaccatggg 243
             |||||||||||||||||||||||| |||| || ||||| || |||||
Sbjct: 95004 gctcacgccaccttctacggcggcagcgacgcctccggaacaatggg 94958
>gb|BG455921.1|BG455921 NF071B09PL1F1075 Phosphate starved leaf Medicago truncatula cDNA
           clone NF071B09PL 5', mRNA sequence
          Length = 689

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 719 aactggggccagaactggcagagcaaca 746
           |||||||| || ||||||||||||||||
Sbjct: 37  aactggggacaaaactggcagagcaaca 64
>gb|BG645759.1|BG645759 EST507378 KV3 Medicago truncatula cDNA clone pKV3-47B23 5' end,
           mRNA sequence
          Length = 731

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 719 aactggggccagaactggcagagcaaca 746
           |||||||| || ||||||||||||||||
Sbjct: 440 aactggggacaaaactggcagagcaaca 467
>gb|BI308198.1|BI308198 EST529608 GPOD Medicago truncatula cDNA clone pGPOD-2M6 5' end,
           mRNA sequence
          Length = 632

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 719 aactggggccagaactggcagagcaaca 746
           |||||||| || ||||||||||||||||
Sbjct: 580 aactggggacaaaactggcagagcaaca 607
>gb|BI308364.1|BI308364 EST529774 GPOD Medicago truncatula cDNA clone pGPOD-2J22 5' end,
           mRNA sequence
          Length = 718

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 719 aactggggccagaactggcagagcaaca 746
           |||||||| || ||||||||||||||||
Sbjct: 624 aactggggacaaaactggcagagcaaca 651
>gb|CA917661.1|CA917661 EST641808 GPOD Medicago truncatula cDNA clone GPOD-36L14, mRNA
           sequence
          Length = 727

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 719 aactggggccagaactggcagagcaaca 746
           |||||||| || ||||||||||||||||
Sbjct: 592 aactggggacaaaactggcagagcaaca 619
>gb|CA917809.1|CA917809 EST641956 GPOD Medicago truncatula cDNA clone GPOD-37G20, mRNA
           sequence
          Length = 730

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 719 aactggggccagaactggcagagcaaca 746
           |||||||| || ||||||||||||||||
Sbjct: 589 aactggggacaaaactggcagagcaaca 616
>gb|AJ500359.1|AJ500359 AJ500359 MTGIM Medicago truncatula cDNA clone mtgmacc120015e08,
           mRNA sequence
          Length = 527

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 719 aactggggccagaactggcagagcaaca 746
           |||||||| || ||||||||||||||||
Sbjct: 232 aactggggacaaaactggcagagcaaca 205
>gb|AJ500361.1|AJ500361 AJ500361 MTGIM Medicago truncatula cDNA clone mtgmacc120015e10,
           mRNA sequence
          Length = 415

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 719 aactggggccagaactggcagagcaaca 746
           |||||||| || ||||||||||||||||
Sbjct: 232 aactggggacaaaactggcagagcaaca 205
>gb|AJ499506.1|AJ499506 AJ499506 MTGIM Medicago truncatula cDNA clone mtgmacc120005b01,
           mRNA sequence
          Length = 341

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 719 aactggggccagaactggcagagcaaca 746
           |||||||| || ||||||||||||||||
Sbjct: 232 aactggggacaaaactggcagagcaaca 205
>gb|AJ499937.1|AJ499937 AJ499937 MTGIM Medicago truncatula cDNA clone mtgmacc120010d11,
           mRNA sequence
          Length = 581

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 719 aactggggccagaactggcagagcaaca 746
           |||||||| || ||||||||||||||||
Sbjct: 404 aactggggacaaaactggcagagcaaca 431
>gb|AC140030.6| Medicago truncatula clone mth2-7g24, complete sequence
          Length = 122057

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 719   aactggggccagaactggcagagcaaca 746
             |||||||| || ||||||||||||||||
Sbjct: 66969 aactggggacaaaactggcagagcaaca 66942
>gb|AC149039.2| Medicago truncatula chromosome 7 BAC clone mth2-4g23, complete sequence
          Length = 103199

 Score = 40.1 bits (20), Expect = 0.46
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1241  taatgaatcttatcaagtta 1260
             ||||||||||||||||||||
Sbjct: 37913 taatgaatcttatcaagtta 37894
  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 147,824
Number of Sequences: 392609
Number of extensions: 147824
Number of successful extensions: 9494
Number of sequences better than  0.5: 15
Number of HSP's better than  0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9468
Number of HSP's gapped (non-prelim): 26
length of query: 1294
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1274
effective length of database: 433,880,813
effective search space: 552764155762
effective search space used: 552764155762
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)