BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2493944.2.1
         (2055 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC155228.11|  Medicago truncatula clone mth2-139i19, comp...    48   0.003
emb|CR932966.2|  Medicago truncatula chromosome 5 clone mth2...    42   0.18 

>gb|AC155228.11| Medicago truncatula clone mth2-139i19, complete sequence
          Length = 112322

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 1748  ggattgtattggtagaagaaatggtaccaccccttgtagtacat 1791
             ||||||||||||||||| || |||||||| || ||||| |||||
Sbjct: 29998 ggattgtattggtagaaaaagtggtaccatcctttgtaatacat 29955



>emb|CR932966.2| Medicago truncatula chromosome 5 clone mth2-45l22, COMPLETE SEQUENCE
          Length = 112211

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 1748  ggattgtattggtagaagaaatggtacca 1776
             |||||||||||||| || |||||||||||
Sbjct: 47413 ggattgtattggtaaaataaatggtacca 47441



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 266,214
Number of Sequences: 392609
Number of extensions: 266214
Number of successful extensions: 19743
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19730
Number of HSP's gapped (non-prelim): 13
length of query: 2055
length of database: 441,732,993
effective HSP length: 20
effective length of query: 2035
effective length of database: 433,880,813
effective search space: 882947454455
effective search space used: 882947454455
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)