BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2493535.2.1
         (580 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AJ499026.1|AJ499026  AJ499026 MTPOSE Medicago truncatula ...    48   8e-004
gb|BQ124948.1|BQ124948  EST610524 GLSD Medicago truncatula c...    40   0.20 
gb|AJ498976.1|AJ498976  AJ498976 MTPOSE Medicago truncatula ...    40   0.20 
gb|CA857783.1|CA857783  EST635038 GLSD Medicago truncatula c...    40   0.20 
gb|CA857861.1|CA857861  EST635116 GLSD Medicago truncatula c...    40   0.20 
gb|AC148755.6|  Medicago truncatula clone mth2-24n16, comple...    40   0.20 
gb|AC174300.4|  Medicago truncatula clone mth2-84c16, comple...    40   0.20 

>gb|AJ499026.1|AJ499026 AJ499026 MTPOSE Medicago truncatula cDNA clone mt--acc955211c09,
           mRNA sequence
          Length = 264

 Score = 48.1 bits (24), Expect = 8e-004
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 268 tggtgcagaagcagcggcggcggaagcc 295
           ||||||||||||||||||| ||||||||
Sbjct: 229 tggtgcagaagcagcggcgacggaagcc 202



>gb|BQ124948.1|BQ124948 EST610524 GLSD Medicago truncatula cDNA clone pGLSD-37P3, mRNA
           sequence
          Length = 715

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 268 tggtgcagaagcagcggcggcggaagcc 295
           ||||||| ||||||||||| ||||||||
Sbjct: 712 tggtgcaaaagcagcggcgacggaagcc 685



>gb|AJ498976.1|AJ498976 AJ498976 MTPOSE Medicago truncatula cDNA clone mt--acc955210g04,
           mRNA sequence
          Length = 364

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 268 tggtgcagaagcagcggcggcggaagcc 295
           ||||||| ||||||||||| ||||||||
Sbjct: 250 tggtgcaaaagcagcggcgacggaagcc 223



>gb|CA857783.1|CA857783 EST635038 GLSD Medicago truncatula cDNA clone pGLSD-26E23, mRNA
           sequence
          Length = 437

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 268 tggtgcagaagcagcggcggcggaagcc 295
           ||||||| ||||||||||| ||||||||
Sbjct: 188 tggtgcaaaagcagcggcgacggaagcc 161



>gb|CA857861.1|CA857861 EST635116 GLSD Medicago truncatula cDNA clone pGLSD-26E2, mRNA
           sequence
          Length = 351

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 268 tggtgcagaagcagcggcggcggaagcc 295
           ||||||| ||||||||||| ||||||||
Sbjct: 185 tggtgcaaaagcagcggcgacggaagcc 158



>gb|AC148755.6| Medicago truncatula clone mth2-24n16, complete sequence
          Length = 119876

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 268   tggtgcagaagcagcggcggcggaagcc 295
             ||||||| ||||||||||| ||||||||
Sbjct: 61466 tggtgcaaaagcagcggcgacggaagcc 61493



>gb|AC174300.4| Medicago truncatula clone mth2-84c16, complete sequence
          Length = 139426

 Score = 40.1 bits (20), Expect = 0.20
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 268    tggtgcagaagcagcggcggcggaagcc 295
              ||||||| ||||||||||| ||||||||
Sbjct: 130696 tggtgcaaaagcagcggcgacggaagcc 130723



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,490
Number of Sequences: 392609
Number of extensions: 74490
Number of successful extensions: 7718
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7703
Number of HSP's gapped (non-prelim): 15
length of query: 580
length of database: 441,732,993
effective HSP length: 19
effective length of query: 561
effective length of database: 434,273,422
effective search space: 243627389742
effective search space used: 243627389742
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)