BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2493531.2.1
(1061 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone m... 46 0.006
gb|BI262841.1|BI262841 NF094F01EC1F1014 Elicited cell cultu... 44 0.024
gb|BI265623.1|BI265623 NF096B09IN1F1077 Insect herbivory Me... 44 0.024
gb|CX524566.1|CX524566 s13dNF07E04AT024_448476 Aphid-Infect... 44 0.024
gb|CX525048.1|CX525048 s13dNF19H08AT076_478730 Aphid-Infect... 44 0.024
gb|CX541417.1|CX541417 s13dNF92C11GS086_466136 Germinating ... 44 0.024
gb|AC146855.5| Medicago truncatula clone mth2-16c23, comple... 44 0.024
gb|AC148486.17| Medicago truncatula clone mth2-56d23, compl... 44 0.024
gb|BE325253.1|BE325253 NF119A07ST1F1052 Developing stem Med... 42 0.094
gb|AL385921.1|AL385921 MtBC31E06F1 MtBC Medicago truncatula... 42 0.094
gb|BF003490.1|BF003490 EST431988 KV1 Medicago truncatula cD... 42 0.094
gb|AY224188.1| Medicago truncatula adenosylhomocysteinase (... 42 0.094
gb|AC146585.18| Medicago truncatula clone mth2-68o3, comple... 42 0.094
gb|AC147715.10| Medicago truncatula clone mth2-76b9, WORKIN... 42 0.094
gb|AW559985.1|AW559985 EST315033 DSIR Medicago truncatula c... 40 0.37
gb|CB892653.1|CB892653 EST645445 HOGA Medicago truncatula c... 40 0.37
gb|CA919151.1|CA919151 EST636869 MTUS Medicago truncatula c... 40 0.37
gb|CF068480.1|CF068480 EST669201 MTUS Medicago truncatula c... 40 0.37
gb|DW015185.1|DW015185 EST1224146 MTY Medicago truncatula c... 40 0.37
gb|AC146747.7| Medicago truncatula clone mth2-14h5, complet... 40 0.37
gb|AC135799.25| Medicago truncatula clone mth2-11f14, compl... 40 0.37
gb|AC147406.13| Medicago truncatula clone mth2-154b3, compl... 40 0.37
>gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-31g23, complete
sequence
Length = 113812
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 118 ctcttcttcctcctcctccccctcctc 144
||||||||||||||||||| |||||||
Sbjct: 77063 ctcttcttcctcctcctcctcctcctc 77089
>gb|BI262841.1|BI262841 NF094F01EC1F1014 Elicited cell culture Medicago truncatula cDNA
clone NF094F01EC 5', mRNA sequence
Length = 503
Score = 44.1 bits (22), Expect = 0.024
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 31 tcttcttcctcctcctcctcctcctc 56
>gb|BI265623.1|BI265623 NF096B09IN1F1077 Insect herbivory Medicago truncatula cDNA clone
NF096B09IN 5', mRNA sequence
Length = 649
Score = 44.1 bits (22), Expect = 0.024
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 17 tcttcttcctcctcctcctcctcctc 42
>gb|CX524566.1|CX524566 s13dNF07E04AT024_448476 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 536
Score = 44.1 bits (22), Expect = 0.024
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 53 tcttcttcctcctcctcctcctcctc 78
>gb|CX525048.1|CX525048 s13dNF19H08AT076_478730 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 546
Score = 44.1 bits (22), Expect = 0.024
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 222 tcttcttcctcctcctcctcctcctc 197
>gb|CX541417.1|CX541417 s13dNF92C11GS086_466136 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 493
Score = 44.1 bits (22), Expect = 0.024
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 19 tcttcttcctcctcctcctcctcctc 44
>gb|AC146855.5| Medicago truncatula clone mth2-16c23, complete sequence
Length = 137979
Score = 44.1 bits (22), Expect = 0.024
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 22786 tcttcttcctcctcctcctcctcctc 22761
Score = 44.1 bits (22), Expect = 0.024
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 21627 tcttcttcctcctcctcctcctcctc 21602
Score = 42.1 bits (21), Expect = 0.094
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 120 cttcttcctcctcctccccctcctc 144
||||||||||||||||| |||||||
Sbjct: 21668 cttcttcctcctcctcctcctcctc 21644
>gb|AC148486.17| Medicago truncatula clone mth2-56d23, complete sequence
Length = 121459
Score = 44.1 bits (22), Expect = 0.024
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 119 tcttcttcctcctcctccccctcctc 144
|||||||||||||||||| |||||||
Sbjct: 35772 tcttcttcctcctcctcctcctcctc 35747
>gb|BE325253.1|BE325253 NF119A07ST1F1052 Developing stem Medicago truncatula cDNA clone
NF119A07ST 5', mRNA sequence
Length = 645
Score = 42.1 bits (21), Expect = 0.094
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| ||||||||||||||| ||| |||||||
Sbjct: 100 ctcctcctcttcttcctcctcttcctcctcctc 68
>gb|AL385921.1|AL385921 MtBC31E06F1 MtBC Medicago truncatula cDNA clone MtBC31E06 T3, mRNA
sequence
Length = 170
Score = 42.1 bits (21), Expect = 0.094
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| ||||||||||||||| ||| |||||||
Sbjct: 42 ctcctcctcttcttcctcctcttcctcctcctc 10
>gb|BF003490.1|BF003490 EST431988 KV1 Medicago truncatula cDNA clone pKV1-7C9, mRNA
sequence
Length = 567
Score = 42.1 bits (21), Expect = 0.094
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| ||||||||||||||| ||| |||||||
Sbjct: 493 ctcctcctcttcttcctcctcttcctcctcctc 461
>gb|AY224188.1| Medicago truncatula adenosylhomocysteinase (AHC1) gene, complete cds
Length = 99431
Score = 42.1 bits (21), Expect = 0.094
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| ||||||||||||||| ||| |||||||
Sbjct: 14433 ctcctcctcttcttcctcctcttcctcctcctc 14465
>gb|AC146585.18| Medicago truncatula clone mth2-68o3, complete sequence
Length = 124526
Score = 42.1 bits (21), Expect = 0.094
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcctc 144
||||| ||||||||||||||| ||| |||||||
Sbjct: 46799 ctcctcctcttcttcctcctcttcctcctcctc 46767
>gb|AC147715.10| Medicago truncatula clone mth2-76b9, WORKING DRAFT SEQUENCE, 24
unordered pieces
Length = 81122
Score = 42.1 bits (21), Expect = 0.094
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 118 ctcttcttcctcctcctccccctcc 142
|||||| ||||||||||||||||||
Sbjct: 15486 ctcttcctcctcctcctccccctcc 15462
>gb|AW559985.1|AW559985 EST315033 DSIR Medicago truncatula cDNA clone pDSIR-26A13, mRNA
sequence
Length = 720
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 505 agtcctaatcagcaacgttg 524
||||||||||||||||||||
Sbjct: 603 agtcctaatcagcaacgttg 622
>gb|CB892653.1|CB892653 EST645445 HOGA Medicago truncatula cDNA clone HOGA-19I20, mRNA
sequence
Length = 798
Score = 40.1 bits (20), Expect = 0.37
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 112 ctcctgctcttcttcctcctcctccccctcct 143
||||| ||||||||||||||| ||| ||||||
Sbjct: 32 ctcctcctcttcttcctcctcttcctcctcct 1
>gb|CA919151.1|CA919151 EST636869 MTUS Medicago truncatula cDNA clone MTUS-8E8, mRNA
sequence
Length = 744
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 505 agtcctaatcagcaacgttg 524
||||||||||||||||||||
Sbjct: 402 agtcctaatcagcaacgttg 383
>gb|CF068480.1|CF068480 EST669201 MTUS Medicago truncatula cDNA clone MTUS-8E8, mRNA
sequence
Length = 739
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 505 agtcctaatcagcaacgttg 524
||||||||||||||||||||
Sbjct: 561 agtcctaatcagcaacgttg 580
>gb|DW015185.1|DW015185 EST1224146 MTY Medicago truncatula cDNA clone MTYA208, mRNA
sequence
Length = 880
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 505 agtcctaatcagcaacgttg 524
||||||||||||||||||||
Sbjct: 657 agtcctaatcagcaacgttg 676
>gb|AC146747.7| Medicago truncatula clone mth2-14h5, complete sequence
Length = 129204
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 125 tcctcctcctccccctcctc 144
||||||||||||||||||||
Sbjct: 101871 tcctcctcctccccctcctc 101852
>gb|AC135799.25| Medicago truncatula clone mth2-11f14, complete sequence
Length = 118281
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 123 cttcctcctcctccccctcc 142
||||||||||||||||||||
Sbjct: 32800 cttcctcctcctccccctcc 32819
>gb|AC147406.13| Medicago truncatula clone mth2-154b3, complete sequence
Length = 116463
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 123 cttcctcctcctccccctcc 142
||||||||||||||||||||
Sbjct: 58793 cttcctcctcctccccctcc 58812
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 196,053
Number of Sequences: 392609
Number of extensions: 196053
Number of successful extensions: 15840
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15752
Number of HSP's gapped (non-prelim): 78
length of query: 1061
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1041
effective length of database: 433,880,813
effective search space: 451669926333
effective search space used: 451669926333
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)