BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2485885.2.1
(1063 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ750534.1|BQ750534 EST633270 KVKC Medicago truncatula c... 40 0.37
gb|CA921240.1|CA921240 EST638958 MTUS Medicago truncatula c... 40 0.37
gb|CB893822.1|CB893822 EST646614 HOGA Medicago truncatula c... 40 0.37
gb|CX539644.1|CX539644 s13dNF66D12GS094_462556 Germinating ... 40 0.37
>gb|BQ750534.1|BQ750534 EST633270 KVKC Medicago truncatula cDNA, mRNA sequence
Length = 723
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 415 cactgtggctggaactcggt 434
||||||||||||||||||||
Sbjct: 548 cactgtggctggaactcggt 529
>gb|CA921240.1|CA921240 EST638958 MTUS Medicago truncatula cDNA clone MTUS-37G6, mRNA
sequence
Length = 823
Score = 40.1 bits (20), Expect = 0.37
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 415 cactgtggctggaactcggt 434
||||||||||||||||||||
Sbjct: 528 cactgtggctggaactcggt 509
>gb|CB893822.1|CB893822 EST646614 HOGA Medicago truncatula cDNA clone HOGA-29I13, mRNA
sequence
Length = 519
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 897 aactccacctgcagatacatctga 920
|||||||| |||||||||||||||
Sbjct: 270 aactccacgtgcagatacatctga 247
>gb|CX539644.1|CX539644 s13dNF66D12GS094_462556 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.37
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 897 aactccacctgcagatacatctga 920
|||||||| |||||||||||||||
Sbjct: 375 aactccacgtgcagatacatctga 352
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 173,786
Number of Sequences: 392609
Number of extensions: 173786
Number of successful extensions: 15974
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15970
Number of HSP's gapped (non-prelim): 4
length of query: 1063
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1043
effective length of database: 433,880,813
effective search space: 452537687959
effective search space used: 452537687959
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)