BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478343.2.1
(694 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL385182.1|AL385182 MtBC26H03F1 MtBC Medicago truncatula... 42 0.061
gb|CA922236.1|CA922236 EST639954 MTUS Medicago truncatula c... 42 0.061
>gb|AL385182.1|AL385182 MtBC26H03F1 MtBC Medicago truncatula cDNA clone MtBC26H03 T3, mRNA
sequence
Length = 194
Score = 42.1 bits (21), Expect = 0.061
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 623 acggcctccacggtggagttccagccgca 651
||||| ||||||||||||||||| |||||
Sbjct: 97 acggcttccacggtggagttccacccgca 69
>gb|CA922236.1|CA922236 EST639954 MTUS Medicago truncatula cDNA clone MTUS-51B6, mRNA
sequence
Length = 710
Score = 42.1 bits (21), Expect = 0.061
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 623 acggcctccacggtggagttccagccgca 651
||||| ||||||||||||||||| |||||
Sbjct: 421 acggcttccacggtggagttccacccgca 449
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,351
Number of Sequences: 392609
Number of extensions: 136351
Number of successful extensions: 9290
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9288
Number of HSP's gapped (non-prelim): 2
length of query: 694
length of database: 441,732,993
effective HSP length: 19
effective length of query: 675
effective length of database: 434,273,422
effective search space: 293134559850
effective search space used: 293134559850
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)