BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2478290.2.1
(1343 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW299016.1|AW299016 EST305690 KV2 Medicago truncatula cD... 96 9e-018
gb|AL385483.1|AL385483 MtBC28H01F1 MtBC Medicago truncatula... 96 9e-018
gb|AJ504258.1|AJ504258 AJ504258 MTAMP Medicago truncatula c... 96 9e-018
gb|DW016615.1|DW016615 EST1225576 MTY Medicago truncatula c... 96 9e-018
gb|BE204116.1|BE204116 EST396792 KV0 Medicago truncatula cD... 94 4e-017
gb|BG453453.1|BG453453 NF094B06LF1F1046 Developing leaf Med... 94 4e-017
gb|BG644435.1|BG644435 EST506054 KV3 Medicago truncatula cD... 78 2e-012
gb|DW015443.1|DW015443 EST1224404 MTY Medicago truncatula c... 78 2e-012
gb|AW171746.2|AW171746 N100640e rootphos(-) Medicago trunca... 70 5e-010
gb|AW257047.1|AW257047 EST305184 KV2 Medicago truncatula cD... 56 8e-006
emb|CR502133.1| mth2-179M7RM1 BAC end, cultivar Jemalong A1... 54 3e-005
gb|AW257443.1|AW257443 EST305580 KV2 Medicago truncatula cD... 48 0.002
gb|AC136839.19| Medicago truncatula clone mth2-13n2, comple... 48 0.002
gb|BI271441.1|BI271441 NF051H12FL1F1104 Developing flower M... 46 0.008
>gb|AW299016.1|AW299016 EST305690 KV2 Medicago truncatula cDNA clone KV2-11A4, mRNA
sequence
Length = 723
Score = 95.6 bits (48), Expect = 9e-018
Identities = 126/152 (82%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcg 516
||||| ||||| ||||||||||||||||| ||||| |||| ||||| |||||||| ||
Sbjct: 480 acagattactgtatgcctggcatgacaggctatgatttgcttaagaaaatcaaggaatca 539
Query: 517 tcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattccttcaaggatc 576
|| || | ||| | || || |||||||| ||||| |||||||| |||||||||||||
Sbjct: 540 tcatcattgagaaacataccagtggtgattatgtcatctgagaatgttccttcaaggatt 599
Query: 577 aataggtgcctggaggaaggagctgacgagtt 608
||||| ||| ||||||||||||| || |||||
Sbjct: 600 aatagatgcttggaggaaggagcagaagagtt 631
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 108 acagactactgcatgcctggcatgacaggatatga 142
||||| ||||| ||||||||||||||||| |||||
Sbjct: 480 acagattactgtatgcctggcatgacaggctatga 514
>gb|AL385483.1|AL385483 MtBC28H01F1 MtBC Medicago truncatula cDNA clone MtBC28H01 T3, mRNA
sequence
Length = 436
Score = 95.6 bits (48), Expect = 9e-018
Identities = 126/152 (82%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcg 516
||||| ||||| ||||||||||||||||| ||||| |||| ||||| |||||||| ||
Sbjct: 126 acagattactgtatgcctggcatgacaggctatgatttgcttaagaaaatcaaggaatca 185
Query: 517 tcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattccttcaaggatc 576
|| || | ||| | || || |||||||| ||||| |||||||| |||||||||||||
Sbjct: 186 tcatcattgagaaacataccagtggtgattatgtcatctgagaatgttccttcaaggatt 245
Query: 577 aataggtgcctggaggaaggagctgacgagtt 608
||||| ||| ||||||||||||| || |||||
Sbjct: 246 aatagatgcttggaggaaggagcagaagagtt 277
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 108 acagactactgcatgcctggcatgacaggatatga 142
||||| ||||| ||||||||||||||||| |||||
Sbjct: 126 acagattactgtatgcctggcatgacaggctatga 160
>gb|AJ504258.1|AJ504258 AJ504258 MTAMP Medicago truncatula cDNA clone mtgmadc120045d08,
mRNA sequence
Length = 626
Score = 95.6 bits (48), Expect = 9e-018
Identities = 126/152 (82%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcg 516
||||| ||||| ||||||||||||||||| ||||| |||| ||||| |||||||| ||
Sbjct: 382 acagattactgtatgcctggcatgacaggctatgatttgcttaagaaaatcaaggaatca 441
Query: 517 tcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattccttcaaggatc 576
|| || | ||| | || || |||||||| ||||| |||||||| |||||||||||||
Sbjct: 442 tcatcattgagaaacataccagtggtgattatgtcatctgagaatgttccttcaaggatt 501
Query: 577 aataggtgcctggaggaaggagctgacgagtt 608
||||| ||| ||||||||||||| || |||||
Sbjct: 502 aatagatgcttggaggaaggagcagaagagtt 533
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 108 acagactactgcatgcctggcatgacaggatatga 142
||||| ||||| ||||||||||||||||| |||||
Sbjct: 382 acagattactgtatgcctggcatgacaggctatga 416
>gb|DW016615.1|DW016615 EST1225576 MTY Medicago truncatula cDNA clone MTYAJ48, mRNA
sequence
Length = 740
Score = 95.6 bits (48), Expect = 9e-018
Identities = 126/152 (82%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcg 516
||||| ||||| ||||||||||||||||| ||||| |||| ||||| |||||||| ||
Sbjct: 533 acagattactgtatgcctggcatgacaggctatgatttgcttaagaaaatcaaggaatca 592
Query: 517 tcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattccttcaaggatc 576
|| || | ||| | || || |||||||| ||||| |||||||| |||||||||||||
Sbjct: 593 tcatcattgagaaacataccagtggtgattatgtcatctgagaatgttccttcaaggatt 652
Query: 577 aataggtgcctggaggaaggagctgacgagtt 608
||||| ||| ||||||||||||| || |||||
Sbjct: 653 aatagatgcttggaggaaggagcagaagagtt 684
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 108 acagactactgcatgcctggcatgacaggatatga 142
||||| ||||| ||||||||||||||||| |||||
Sbjct: 533 acagattactgtatgcctggcatgacaggctatga 567
>gb|BE204116.1|BE204116 EST396792 KV0 Medicago truncatula cDNA clone pKV0-14F9, mRNA
sequence
Length = 649
Score = 93.7 bits (47), Expect = 4e-017
Identities = 119/143 (83%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcg 516
||||| ||||| ||||||||||||||||| ||||| |||| ||||| |||||||| ||
Sbjct: 461 acagattactgtatgcctggcatgacaggctatgatttgcttaagaaaatcaaggaatca 520
Query: 517 tcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattccttcaaggatc 576
|| || | ||| | || || |||||||| ||||| |||||||| |||||||||||||
Sbjct: 521 tcatcattgagaaacataccagtggtgattatgtcatctgagaatgttccttcaaggatt 580
Query: 577 aataggtgcctggaggaaggagc 599
||||| ||| |||||||||||||
Sbjct: 581 aatagatgcttggaggaaggagc 603
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 108 acagactactgcatgcctggcatgacaggatatga 142
||||| ||||| ||||||||||||||||| |||||
Sbjct: 461 acagattactgtatgcctggcatgacaggctatga 495
>gb|BG453453.1|BG453453 NF094B06LF1F1046 Developing leaf Medicago truncatula cDNA clone
NF094B06LF 5', mRNA sequence
Length = 665
Score = 93.7 bits (47), Expect = 4e-017
Identities = 119/143 (83%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcg 516
||||| ||||| ||||||||||||||||| ||||| |||| ||||| |||||||| ||
Sbjct: 509 acagattactgtatgcctggcatgacaggctatgatttgcttaagaaaatcaaggaatca 568
Query: 517 tcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattccttcaaggatc 576
|| || | ||| | || || |||||||| ||||| |||||||| |||||||||||||
Sbjct: 569 tcatcattgagaaacataccagtggtgattatgtcatctgagaatgttccttcaaggatt 628
Query: 577 aataggtgcctggaggaaggagc 599
||||| ||| |||||||||||||
Sbjct: 629 aatagatgcttggaggaaggagc 651
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 108 acagactactgcatgcctggcatgacaggatatga 142
||||| ||||| ||||||||||||||||| |||||
Sbjct: 509 acagattactgtatgcctggcatgacaggctatga 543
>gb|BG644435.1|BG644435 EST506054 KV3 Medicago truncatula cDNA clone pKV3-37C20 5' end,
mRNA sequence
Length = 647
Score = 77.8 bits (39), Expect = 2e-012
Identities = 117/143 (81%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcg 516
||||| ||||| ||||||||||||||||| ||||| |||| ||||| |||||||| ||
Sbjct: 498 acagattactgtatgcctggcatgacaggctatgatttgcttaagaaaatcaaggaatca 557
Query: 517 tcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattccttcaaggatc 576
|| || | ||| | || || |||||||| ||||| |||||||| |||||| |||||
Sbjct: 558 tcatcattgagaaacataccagtggtgattatgtcatctgagaatgttcctttcaggatt 617
Query: 577 aataggtgcctggaggaaggagc 599
||||| ||| |||||||||||||
Sbjct: 618 aatagatgcttggaggaaggagc 640
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 108 acagactactgcatgcctggcatgacaggatatga 142
||||| ||||| ||||||||||||||||| |||||
Sbjct: 498 acagattactgtatgcctggcatgacaggctatga 532
>gb|DW015443.1|DW015443 EST1224404 MTY Medicago truncatula cDNA clone MTYA521, mRNA
sequence
Length = 544
Score = 77.8 bits (39), Expect = 2e-012
Identities = 117/143 (81%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaaggagtcg 516
||||| ||||| ||||||||||||||||| ||||| |||| ||||| |||||||| ||
Sbjct: 389 acagattactgtatgcctggcatgacaggctatgatttgcttaagaaaatcaaggaatca 448
Query: 517 tcgtctctcagagatatcccggtggtgatcatgtcctctgagaacattccttcaaggatc 576
|| || | ||| | || || |||||||| ||||| ||||| | |||||||||||||
Sbjct: 449 tcatcattgagaaacataccagtggtgattatgtcatctgaaagtgttccttcaaggatt 508
Query: 577 aataggtgcctggaggaaggagc 599
||||| ||| |||||||||||||
Sbjct: 509 aatagatgcttggaggaaggagc 531
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 108 acagactactgcatgcctggcatgacaggatatga 142
||||| ||||| ||||||||||||||||| |||||
Sbjct: 389 acagattactgtatgcctggcatgacaggctatga 423
>gb|AW171746.2|AW171746 N100640e rootphos(-) Medicago truncatula cDNA clone MHRP-9E1, mRNA
sequence
Length = 548
Score = 69.9 bits (35), Expect = 5e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 538 gtggtgatcatgtcctctgagaacattccttcaaggatcaataggtgcctggaggaagga 597
|||||||| ||||| |||||||| ||||||||||||| ||||| ||| |||||||||||
Sbjct: 60 gtggtgattatgtcatctgagaatgttccttcaaggattaatagatgcttggaggaagga 119
Query: 598 gctgacgagtt 608
|| || |||||
Sbjct: 120 gcagaagagtt 130
>gb|AW257047.1|AW257047 EST305184 KV2 Medicago truncatula cDNA clone KV2-6D12, mRNA
sequence
Length = 573
Score = 56.0 bits (28), Expect = 8e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaagga 512
||||| ||||| ||||||||||||||||| ||||| |||| ||||| ||||||||
Sbjct: 494 acagattactgtatgcctggcatgacaggctatgatttgcttaagaaaatcaagga 549
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 108 acagactactgcatgcctggcatgacaggatatga 142
||||| ||||| ||||||||||||||||| |||||
Sbjct: 494 acagattactgtatgcctggcatgacaggctatga 528
>emb|CR502133.1| mth2-179M7RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 577
Score = 54.0 bits (27), Expect = 3e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaagg 511
||||| ||||| ||||||||||||||||| ||||| |||| ||||| |||||||
Sbjct: 495 acagattactgtatgcctggcatgacaggctatgatttgcttaagaaaatcaagg 549
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 108 acagactactgcatgcctggcatgacaggatatga 142
||||| ||||| ||||||||||||||||| |||||
Sbjct: 495 acagattactgtatgcctggcatgacaggctatga 529
>gb|AW257443.1|AW257443 EST305580 KV2 Medicago truncatula cDNA clone KV2-9H4, mRNA sequence
Length = 614
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatgacctgctcaagaagatcaagga 512
||||| ||||| ||||||||||||||||| ||||| |||| || || ||||||||
Sbjct: 497 acagattactgtatgcctggcatgacaggctatgatttgcttaacaaaatcaagga 552
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 108 acagactactgcatgcctggcatgacaggatatga 142
||||| ||||| ||||||||||||||||| |||||
Sbjct: 497 acagattactgtatgcctggcatgacaggctatga 531
>gb|AC136839.19| Medicago truncatula clone mth2-13n2, complete sequence
Length = 122138
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 468 catgcctggcatgacaggatatgacctgctcaagaagatcaagg 511
||||||||| |||||||||||||| | |||||||| |||||||
Sbjct: 14421 catgcctgggatgacaggatatgaattactcaagaaaatcaagg 14378
Score = 40.1 bits (20), Expect = 0.47
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 119 catgcctggcatgacaggatatga 142
||||||||| ||||||||||||||
Sbjct: 14421 catgcctgggatgacaggatatga 14398
>gb|BI271441.1|BI271441 NF051H12FL1F1104 Developing flower Medicago truncatula cDNA clone
NF051H12FL 5', mRNA sequence
Length = 648
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 457 acagactactgcatgcctggcatgacaggatatga 491
||||| ||||| ||||||||||||||||| |||||
Sbjct: 610 acagattactgtatgcctggcatgacaggctatga 644
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 108 acagactactgcatgcctggcatgacaggatatga 142
||||| ||||| ||||||||||||||||| |||||
Sbjct: 610 acagattactgtatgcctggcatgacaggctatga 644
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 272,736
Number of Sequences: 392609
Number of extensions: 272736
Number of successful extensions: 19653
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19611
Number of HSP's gapped (non-prelim): 34
length of query: 1343
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1323
effective length of database: 433,880,813
effective search space: 574024315599
effective search space used: 574024315599
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)