BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455828.2.1
(1565 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG647719.1|BG647719 EST509338 HOGA Medicago truncatula c... 66 1e-008
gb|CX529710.1|CX529710 s13dNF50H03MJ029_245466 Methyl Jasmo... 66 1e-008
gb|AC152158.10| Medicago truncatula clone mth2-139g10, comp... 64 4e-008
gb|AC158375.1| Medicago truncatula chromosome 2 clone mth2-... 64 4e-008
gb|AC161033.18| Medicago truncatula clone mth2-57g13, compl... 64 4e-008
gb|CG926153.1|CG926153 MBELA35TF mth2 Medicago truncatula g... 44 0.035
gb|CX519689.1|CX519689 s13dNF70D12VI102_443430 Virus-Infect... 44 0.035
emb|CR962131.1| Medicago truncatula chromosome 5 clone mth2... 44 0.035
emb|CR307089.1| mte1-27L2FM1 BAC end, cultivar Jemalong A17... 42 0.14
gb|BF005236.1|BF005236 EST433734 DSLC Medicago truncatula c... 42 0.14
gb|BF640614.1|BF640614 NF014G11IN1F1087 Insect herbivory Me... 42 0.14
gb|CB892078.1|CB892078 EST649047 KV3 Medicago truncatula cD... 42 0.14
gb|CX524101.1|CX524101 s13dNF03H08AT074_447546 Aphid-Infect... 42 0.14
gb|DW018221.1|DW018221 EST1227182 MTY Medicago truncatula c... 42 0.14
gb|AC122726.21| Medicago truncatula clone mth2-23o24, compl... 42 0.14
gb|AC137832.39| Medicago truncatula clone mth2-22i17, compl... 42 0.14
gb|AC146776.31| Medicago truncatula clone mth2-125i24, WORK... 42 0.14
>gb|BG647719.1|BG647719 EST509338 HOGA Medicago truncatula cDNA clone pHOGA-17P9 5' end, mRNA
sequence
Length = 702
Score = 65.9 bits (33), Expect = 1e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 1160 atcacctttatttgtgtctggatggagcttctttgcaagcccata 1204
|||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 365 atcatctttatttgcatctggatggagcttctttgcaagcccata 321
>gb|CX529710.1|CX529710 s13dNF50H03MJ029_245466 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 655
Score = 65.9 bits (33), Expect = 1e-008
Identities = 42/45 (93%)
Strand = Plus / Minus
Query: 1160 atcacctttatttgtgtctggatggagcttctttgcaagcccata 1204
|||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 563 atcatctttatttgcatctggatggagcttctttgcaagcccata 519
>gb|AC152158.10| Medicago truncatula clone mth2-139g10, complete sequence
Length = 140874
Score = 63.9 bits (32), Expect = 4e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1160 atcacctttatttgtgtctggatggagcttctttgcaagc 1199
|||| ||||||||||||||||||||| |||||||||||||
Sbjct: 119134 atcatctttatttgtgtctggatggatcttctttgcaagc 119173
Score = 56.0 bits (28), Expect = 9e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1160 atcacctttatttgtgtctggatggagcttctttgcaagc 1199
|||| ||||||||| ||||||||||||||||||||||||
Sbjct: 132039 atcatctttatttgcatctggatggagcttctttgcaagc 132078
>gb|AC158375.1| Medicago truncatula chromosome 2 clone mth2-57g13, *** SEQUENCING IN
PROGRESS ***, 21 unordered pieces
Length = 127685
Score = 63.9 bits (32), Expect = 4e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1160 atcacctttatttgtgtctggatggagcttctttgcaagc 1199
|||| ||||||||||||||||||||| |||||||||||||
Sbjct: 78488 atcatctttatttgtgtctggatggatcttctttgcaagc 78527
Score = 63.9 bits (32), Expect = 4e-008
Identities = 38/40 (95%)
Strand = Plus / Minus
Query: 1160 atcacctttatttgtgtctggatggagcttctttgcaagc 1199
|||| ||||||||||||||||||||| |||||||||||||
Sbjct: 5947 atcatctttatttgtgtctggatggatcttctttgcaagc 5908
Score = 56.0 bits (28), Expect = 9e-006
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 1160 atcacctttatttgtgtctggatggagcttctttgcaagc 1199
|||| ||||||||| ||||||||||||||||||||||||
Sbjct: 69085 atcatctttatttgcatctggatggagcttctttgcaagc 69046
>gb|AC161033.18| Medicago truncatula clone mth2-57g13, complete sequence
Length = 109039
Score = 63.9 bits (32), Expect = 4e-008
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 1160 atcacctttatttgtgtctggatggagcttctttgcaagc 1199
|||| ||||||||||||||||||||| |||||||||||||
Sbjct: 14318 atcatctttatttgtgtctggatggatcttctttgcaagc 14357
Score = 56.0 bits (28), Expect = 9e-006
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 1160 atcacctttatttgtgtctggatggagcttctttgcaagc 1199
|||| ||||||||| ||||||||||||||||||||||||
Sbjct: 27223 atcatctttatttgcatctggatggagcttctttgcaagc 27262
>gb|CG926153.1|CG926153 MBELA35TF mth2 Medicago truncatula genomic clone 78E21, DNA
sequence
Length = 881
Score = 44.1 bits (22), Expect = 0.035
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 962 tccaccaccgccaccgccaccaccaa 987
|||||| |||||||||||||||||||
Sbjct: 685 tccacccccgccaccgccaccaccaa 660
>gb|CX519689.1|CX519689 s13dNF70D12VI102_443430 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 591
Score = 44.1 bits (22), Expect = 0.035
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 962 tccaccaccgccaccgccaccaccaa 987
|||||| |||||||||||||||||||
Sbjct: 525 tccacccccgccaccgccaccaccaa 550
>emb|CR962131.1| Medicago truncatula chromosome 5 clone mth2-69b10, WORKING DRAFT
SEQUENCE
Length = 116344
Score = 44.1 bits (22), Expect = 0.035
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 962 tccaccaccgccaccgccaccaccaa 987
|||||| |||||||||||||||||||
Sbjct: 85015 tccacccccgccaccgccaccaccaa 85040
>emb|CR307089.1| mte1-27L2FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 434
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 962 tccaccaccgccaccgccacc 982
|||||||||||||||||||||
Sbjct: 376 tccaccaccgccaccgccacc 356
>gb|BF005236.1|BF005236 EST433734 DSLC Medicago truncatula cDNA clone pDSLC-31H18, mRNA
sequence
Length = 686
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 67 ccaccgccaccgccaccacca 87
>gb|BF640614.1|BF640614 NF014G11IN1F1087 Insect herbivory Medicago truncatula cDNA clone
NF014G11IN 5', mRNA sequence
Length = 652
Score = 42.1 bits (21), Expect = 0.14
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 1160 atcacctttatttgtgtctggatggagcttctttgcaagcccata 1204
|||| |||| |||||||| ||||| | ||| ||||||||||||||
Sbjct: 647 atcatctttgtttgtgtcaggatgtaacttttttgcaagcccata 603
>gb|CB892078.1|CB892078 EST649047 KV3 Medicago truncatula cDNA clone KV3-53I17, mRNA
sequence
Length = 441
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 42 ccaccgccaccgccaccacca 62
>gb|CX524101.1|CX524101 s13dNF03H08AT074_447546 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 567
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 966 ccaccgccaccgccaccacca 986
|||||||||||||||||||||
Sbjct: 17 ccaccgccaccgccaccacca 37
>gb|DW018221.1|DW018221 EST1227182 MTY Medicago truncatula cDNA clone MTYB382, mRNA sequence
Length = 817
Score = 42.1 bits (21), Expect = 0.14
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 1160 atcacctttatttgtgtctggatggagcttctttgcaagcccata 1204
|||| |||| |||||||| ||||| | ||| ||||||||||||||
Sbjct: 428 atcatctttgtttgtgtcaggatgtaacttttttgcaagcccata 384
>gb|AC122726.21| Medicago truncatula clone mth2-23o24, complete sequence
Length = 130999
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 963 ccaccaccgccaccgccacca 983
|||||||||||||||||||||
Sbjct: 20190 ccaccaccgccaccgccacca 20170
>gb|AC137832.39| Medicago truncatula clone mth2-22i17, complete sequence
Length = 127696
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 962 tccaccaccgccaccgccacc 982
|||||||||||||||||||||
Sbjct: 85330 tccaccaccgccaccgccacc 85310
>gb|AC146776.31| Medicago truncatula clone mth2-125i24, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 132037
Score = 42.1 bits (21), Expect = 0.14
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 963 ccaccaccgccaccgccacca 983
|||||||||||||||||||||
Sbjct: 72272 ccaccaccgccaccgccacca 72292
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 318,464
Number of Sequences: 392609
Number of extensions: 318464
Number of successful extensions: 22370
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22285
Number of HSP's gapped (non-prelim): 85
length of query: 1565
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1545
effective length of database: 433,880,813
effective search space: 670345856085
effective search space used: 670345856085
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)