BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2455820.2.1
(1312 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW560211.1|AW560211 EST315251 DSIR Medicago truncatula c... 52 1e-004
gb|AJ497568.1|AJ497568 AJ497568 MTFLOW Medicago truncatula ... 52 1e-004
gb|AW775773.1|AW775773 EST334838 DSIL Medicago truncatula c... 40 0.46
gb|BE999648.1|BE999648 EST431371 GVSN Medicago truncatula c... 40 0.46
gb|BF635296.1|BF635296 NF063F07DT1F1062 Drought Medicago tr... 40 0.46
gb|BI311520.1|BI311520 EST5313270 GESD Medicago truncatula ... 40 0.46
gb|BQ124907.1|BQ124907 EST610483 GLSD Medicago truncatula c... 40 0.46
gb|BQ125002.1|BQ125002 EST610578 GLSD Medicago truncatula c... 40 0.46
gb|CX524769.1|CX524769 s13dNF10H04AT044_478172 Aphid-Infect... 40 0.46
gb|CX531179.1|CX531179 s13dNF22H07MJ061_248485 Methyl Jasmo... 40 0.46
gb|AC126785.11| Medicago truncatula clone mth2-9i24, comple... 40 0.46
>gb|AW560211.1|AW560211 EST315251 DSIR Medicago truncatula cDNA clone pDSIR-26M4, mRNA
sequence
Length = 656
Score = 52.0 bits (26), Expect = 1e-004
Identities = 101/126 (80%)
Strand = Plus / Plus
Query: 426 atagttccctgactttgtgtacagcacacggtgatggtagtcatggaagtccgagccgcc 485
|||||| || ||||| ||||||| || ||| ||||| |||||||| || || || || ||
Sbjct: 320 atagtttccagacttagtgtacaacaaacgatgatgatagtcatgaaaatcggatcctcc 379
Query: 486 atacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttcaac 545
||| || || | ||| ||||| |||||||||||||| ||||| || | || || |||||
Sbjct: 380 ataaagtggtaagaagtttgaggggctccatgggaaatgataaccacaatgtgcctcaac 439
Query: 546 tgtctc 551
||||||
Sbjct: 440 tgtctc 445
>gb|AJ497568.1|AJ497568 AJ497568 MTFLOW Medicago truncatula cDNA clone mt--abc955111a03,
mRNA sequence
Length = 495
Score = 52.0 bits (26), Expect = 1e-004
Identities = 101/126 (80%)
Strand = Plus / Minus
Query: 426 atagttccctgactttgtgtacagcacacggtgatggtagtcatggaagtccgagccgcc 485
|||||| || ||||| ||||||| || ||| ||||| |||||||| || || || || ||
Sbjct: 330 atagtttccagacttagtgtacaacaaacgatgatgatagtcatgaaaatcggatcctcc 271
Query: 486 atacagcggcaggaaatttgatgggctccatgggaagtgatagccgctgtgagcttcaac 545
||| || || | ||| ||||| |||||||||||||| ||||| || | || || |||||
Sbjct: 270 ataaagtggtaagaagtttgaggggctccatgggaaatgataaccacaatgtgcctcaac 211
Query: 546 tgtctc 551
||||||
Sbjct: 210 tgtctc 205
>gb|AW775773.1|AW775773 EST334838 DSIL Medicago truncatula cDNA clone pDSIL-3I5, mRNA
sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.46
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 658 gcatattccgatgttaaaccaaagggtgtggcgtactcatggtggacgctgtgaacgtgt 717
||||||||||| || | ||||| ||||| || ||||| || || || ||||| | ||
Sbjct: 475 gcatattccgaagtaagtccaaatggtgtcgcatactcgtgatgtacactgtggatatgc 416
Query: 718 ttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcctc 773
||||||| |||||| || ||||| |||||| |||||||||||||| || |||||
Sbjct: 415 ttgtataaccattttgtgtgcaaaatcctgtgtccccaatagaatatgaagtcctc 360
>gb|BE999648.1|BE999648 EST431371 GVSN Medicago truncatula cDNA clone pGVSN-24K5, mRNA
sequence
Length = 608
Score = 40.1 bits (20), Expect = 0.46
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 658 gcatattccgatgttaaaccaaagggtgtggcgtactcatggtggacgctgtgaacgtgt 717
||||||||||| || | ||||| ||||| || ||||| || || || ||||| | ||
Sbjct: 529 gcatattccgaagtaagtccaaatggtgtcgcatactcgtgatgtacactgtggatatgc 470
Query: 718 ttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcctc 773
||||||| |||||| || ||||| |||||| |||||||||||||| || |||||
Sbjct: 469 ttgtataaccattttgtgtgcaaaatcctgtgtccccaatagaatatgaagtcctc 414
>gb|BF635296.1|BF635296 NF063F07DT1F1062 Drought Medicago truncatula cDNA clone NF063F07DT
5', mRNA sequence
Length = 668
Score = 40.1 bits (20), Expect = 0.46
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 658 gcatattccgatgttaaaccaaagggtgtggcgtactcatggtggacgctgtgaacgtgt 717
||||||||||| || | ||||| ||||| || ||||| || || || ||||| | ||
Sbjct: 551 gcatattccgaagtaagtccaaatggtgtcgcatactcgtgatgtacactgtggatatgc 492
Query: 718 ttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcctc 773
||||||| |||||| || ||||| |||||| |||||||||||||| || |||||
Sbjct: 491 ttgtataaccattttgtgtgcaaaatcctgtgtccccaatagaatatgaagtcctc 436
>gb|BI311520.1|BI311520 EST5313270 GESD Medicago truncatula cDNA clone pGESD13I7 5' end,
mRNA sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.46
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 658 gcatattccgatgttaaaccaaagggtgtggcgtactcatggtggacgctgtgaacgtgt 717
||||||||||| || | ||||| ||||| || ||||| || || || ||||| | ||
Sbjct: 533 gcatattccgaagtaagtccaaatggtgtcgcatactcgtgatgtacactgtggatatgc 474
Query: 718 ttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcctc 773
||||||| |||||| || ||||| |||||| |||||||||||||| || |||||
Sbjct: 473 ttgtataaccattttgtgtgcaaaatcctgtgtccccaatagaatatgaagtcctc 418
>gb|BQ124907.1|BQ124907 EST610483 GLSD Medicago truncatula cDNA clone pGLSD-37H11, mRNA
sequence
Length = 667
Score = 40.1 bits (20), Expect = 0.46
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 658 gcatattccgatgttaaaccaaagggtgtggcgtactcatggtggacgctgtgaacgtgt 717
||||||||||| || | ||||| ||||| || ||||| || || || ||||| | ||
Sbjct: 497 gcatattccgaagtaagtccaaatggtgtcgcatactcgtgatgtacactgtggatatgc 438
Query: 718 ttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcctc 773
||||||| |||||| || ||||| |||||| |||||||||||||| || |||||
Sbjct: 437 ttgtataaccattttgtgtgcaaaatcctgtgtccccaatagaatatgaagtcctc 382
>gb|BQ125002.1|BQ125002 EST610578 GLSD Medicago truncatula cDNA clone pGLSD-37J2, mRNA
sequence
Length = 586
Score = 40.1 bits (20), Expect = 0.46
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 658 gcatattccgatgttaaaccaaagggtgtggcgtactcatggtggacgctgtgaacgtgt 717
||||||||||| || | ||||| ||||| || ||||| || || || ||||| | ||
Sbjct: 500 gcatattccgaagtaagtccaaatggtgtcgcatactcgtgatgtacactgtggatatgc 441
Query: 718 ttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcctc 773
||||||| |||||| || ||||| |||||| |||||||||||||| || |||||
Sbjct: 440 ttgtataaccattttgtgtgcaaaatcctgtgtccccaatagaatatgaagtcctc 385
>gb|CX524769.1|CX524769 s13dNF10H04AT044_478172 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 562
Score = 40.1 bits (20), Expect = 0.46
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 658 gcatattccgatgttaaaccaaagggtgtggcgtactcatggtggacgctgtgaacgtgt 717
||||||||||| || | ||||| ||||| || ||||| || || || ||||| | ||
Sbjct: 558 gcatattccgaagtaagtccaaatggtgtcgcatactcgtgatgtacactgtggatatgc 499
Query: 718 ttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcctc 773
||||||| |||||| || ||||| |||||| |||||||||||||| || |||||
Sbjct: 498 ttgtataaccattttgtgtgcaaaatcctgtgtccccaatagaatatgaagtcctc 443
>gb|CX531179.1|CX531179 s13dNF22H07MJ061_248485 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 645
Score = 40.1 bits (20), Expect = 0.46
Identities = 92/116 (79%)
Strand = Plus / Minus
Query: 658 gcatattccgatgttaaaccaaagggtgtggcgtactcatggtggacgctgtgaacgtgt 717
||||||||||| || | ||||| ||||| || ||||| || || || ||||| | ||
Sbjct: 555 gcatattccgaagtaagtccaaatggtgtcgcatactcgtgatgtacactgtggatatgc 496
Query: 718 ttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcctc 773
||||||| |||||| || ||||| |||||| |||||||||||||| || |||||
Sbjct: 495 ttgtataaccattttgtgtgcaaaatcctgtgtccccaatagaatatgaagtcctc 440
>gb|AC126785.11| Medicago truncatula clone mth2-9i24, complete sequence
Length = 132702
Score = 40.1 bits (20), Expect = 0.46
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 718 ttgtatagccatttcgtatgcaatgccctgtgcccccaatagaatataaaatcctc 773
||||||| |||||| || ||||| |||||| |||||||||||||| || |||||
Sbjct: 103810 ttgtataaccattttgtgtgcaaaatcctgtgtccccaatagaatatgaagtcctc 103755
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 284,092
Number of Sequences: 392609
Number of extensions: 284092
Number of successful extensions: 23516
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23488
Number of HSP's gapped (non-prelim): 19
length of query: 1312
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1292
effective length of database: 433,880,813
effective search space: 560574010396
effective search space used: 560574010396
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)