BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441276.2.1
(1796 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone m... 60 7e-007
gb|AC152176.5| Medicago truncatula clone mth2-65c4, complet... 44 0.041
gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone m... 44 0.041
gb|AC167404.2| Medicago truncatula clone mth2-9d11, WORKING... 44 0.041
gb|AC174279.5| Medicago truncatula clone mth2-9f10, WORKING... 44 0.041
gb|AC167404.3| Medicago truncatula clone mth2-9d11, WORKING... 44 0.041
>gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone mth2-48e18, complete sequence
Length = 146321
Score = 60.0 bits (30), Expect = 7e-007
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaatct 1000
||||||||||||||||||||||||||||||
Sbjct: 137789 ttcttgaccttgcaagaccttttggaatct 137818
Score = 54.0 bits (27), Expect = 4e-005
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 971 ttcttgaccttgcaagaccttttggaatctt 1001
|||||||||||||||||||||| ||||||||
Sbjct: 137996 ttcttgaccttgcaagacctttcggaatctt 138026
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagaccttgtggaat 1229
||||||||||||||||||||| ||||||
Sbjct: 137789 ttcttgaccttgcaagaccttttggaat 137816
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 137996 ttcttgaccttgcaagacctt 138016
>gb|AC152176.5| Medicago truncatula clone mth2-65c4, complete sequence
Length = 161536
Score = 44.1 bits (22), Expect = 0.041
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttt 992
||||||||||||||||||||||
Sbjct: 9632 ttcttgaccttgcaagaccttt 9611
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 9632 ttcttgaccttgcaagacctt 9612
>gb|AC150891.3| Medicago truncatula chromosome 2 BAC clone mth2-76a9, complete sequence
Length = 142579
Score = 44.1 bits (22), Expect = 0.041
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagaccttg 1223
||||||||||||||||||||||
Sbjct: 51398 ttcttgaccttgcaagaccttg 51377
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagacctt 991
|||||||||||||||||||||
Sbjct: 51398 ttcttgaccttgcaagacctt 51378
>gb|AC167404.2| Medicago truncatula clone mth2-9d11, WORKING DRAFT SEQUENCE, 8
unordered pieces
Length = 58201
Score = 44.1 bits (22), Expect = 0.041
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1307 tttcagtctctttgcatttggtgcag 1332
|||||| |||||||||||||||||||
Sbjct: 19593 tttcagactctttgcatttggtgcag 19618
>gb|AC174279.5| Medicago truncatula clone mth2-9f10, WORKING DRAFT SEQUENCE, 12
unordered pieces
Length = 73000
Score = 44.1 bits (22), Expect = 0.041
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 971 ttcttgaccttgcaagaccttt 992
||||||||||||||||||||||
Sbjct: 22175 ttcttgaccttgcaagaccttt 22154
Score = 42.1 bits (21), Expect = 0.16
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1202 ttcttgaccttgcaagacctt 1222
|||||||||||||||||||||
Sbjct: 22175 ttcttgaccttgcaagacctt 22155
>gb|AC167404.3| Medicago truncatula clone mth2-9d11, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 62746
Score = 44.1 bits (22), Expect = 0.041
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1307 tttcagtctctttgcatttggtgcag 1332
|||||| |||||||||||||||||||
Sbjct: 23663 tttcagactctttgcatttggtgcag 23688
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 418,246
Number of Sequences: 392609
Number of extensions: 418246
Number of successful extensions: 28355
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28291
Number of HSP's gapped (non-prelim): 64
length of query: 1796
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1776
effective length of database: 433,880,813
effective search space: 770572323888
effective search space used: 770572323888
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)