BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440806.2.2
(1155 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF632852.1|BF632852 NF044E06DT1F1051 Drought Medicago tr... 42 0.10
gb|BF646326.1|BF646326 NF068H09EC1F1079 Elicited cell cultu... 42 0.10
gb|BI308649.1|BI308649 EST530059 GPOD Medicago truncatula c... 42 0.10
gb|CA917586.1|CA917586 EST641733 GPOD Medicago truncatula c... 42 0.10
gb|CB891668.1|CB891668 EST648637 KV3 Medicago truncatula cD... 42 0.10
gb|AZ758033.1|AZ758033 T221213b Medicago truncatula BAC lib... 40 0.41
gb|CG930197.1|CG930197 MBEDS86TRD mth2 Medicago truncatula ... 40 0.41
gb|AC124955.34| Medicago truncatula clone mth2-12l24, compl... 40 0.41
gb|AC146790.16| Medicago truncatula clone mth2-123b21, comp... 40 0.41
gb|AC147405.7| Medicago truncatula clone mth2-146n5, comple... 40 0.41
gb|AC130810.14| Medicago truncatula clone mth2-36b14, compl... 40 0.41
emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4... 40 0.41
>gb|BF632852.1|BF632852 NF044E06DT1F1051 Drought Medicago truncatula cDNA clone NF044E06DT
5', mRNA sequence
Length = 573
Score = 42.1 bits (21), Expect = 0.10
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactgg 547
||||| ||||||||||| |||||||| ||||||
Sbjct: 123 ttccatgtggtgaacaatgactacactcactgg 155
>gb|BF646326.1|BF646326 NF068H09EC1F1079 Elicited cell culture Medicago truncatula cDNA
clone NF068H09EC 5', mRNA sequence
Length = 662
Score = 42.1 bits (21), Expect = 0.10
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactgg 547
||||| ||||||||||| |||||||| ||||||
Sbjct: 34 ttccatgtggtgaacaatgactacactcactgg 66
>gb|BI308649.1|BI308649 EST530059 GPOD Medicago truncatula cDNA clone pGPOD-7D5 5' end,
mRNA sequence
Length = 811
Score = 42.1 bits (21), Expect = 0.10
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactgg 547
||||| ||||||||||| |||||||| ||||||
Sbjct: 727 ttccatgtggtgaacaatgactacactcactgg 759
>gb|CA917586.1|CA917586 EST641733 GPOD Medicago truncatula cDNA clone GPOD-36L23, mRNA
sequence
Length = 751
Score = 42.1 bits (21), Expect = 0.10
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 515 ttccacgtggtgaacaacgactacacgcactgg 547
||||| ||||||||||| |||||||| ||||||
Sbjct: 722 ttccatgtggtgaacaatgactacactcactgg 690
>gb|CB891668.1|CB891668 EST648637 KV3 Medicago truncatula cDNA clone KV3-51M20, mRNA
sequence
Length = 808
Score = 42.1 bits (21), Expect = 0.10
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 515 ttccacgtggtgaacaacgactacacgcactgg 547
||||| ||||||||||| |||||||| ||||||
Sbjct: 759 ttccatgtggtgaacaatgactacactcactgg 791
>gb|AZ758033.1|AZ758033 T221213b Medicago truncatula BAC library Medicago truncatula genomic
clone 75D01, DNA sequence
Length = 318
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1074 aatttagggactgtttggtt 1093
||||||||||||||||||||
Sbjct: 147 aatttagggactgtttggtt 128
>gb|CG930197.1|CG930197 MBEDS86TRD mth2 Medicago truncatula genomic clone 34P3, DNA sequence
Length = 703
Score = 40.1 bits (20), Expect = 0.41
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1089 tggtttgtggttaaatgtgctacacttt 1116
||||||||||| |||||||||||||||
Sbjct: 84 tggtttgtggtggaatgtgctacacttt 111
>gb|AC124955.34| Medicago truncatula clone mth2-12l24, complete sequence
Length = 115804
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1074 aatttagggactgtttggtt 1093
||||||||||||||||||||
Sbjct: 40006 aatttagggactgtttggtt 39987
>gb|AC146790.16| Medicago truncatula clone mth2-123b21, complete sequence
Length = 114449
Score = 40.1 bits (20), Expect = 0.41
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1089 tggtttgtggttaaatgtgctacacttt 1116
||||||||||| |||||||||||||||
Sbjct: 42068 tggtttgtggtggaatgtgctacacttt 42095
>gb|AC147405.7| Medicago truncatula clone mth2-146n5, complete sequence
Length = 147062
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1074 aatttagggactgtttggtt 1093
||||||||||||||||||||
Sbjct: 107057 aatttagggactgtttggtt 107076
>gb|AC130810.14| Medicago truncatula clone mth2-36b14, complete sequence
Length = 117901
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1074 aatttagggactgtttggtt 1093
||||||||||||||||||||
Sbjct: 32663 aatttagggactgtttggtt 32682
>emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE
Length = 243542
Score = 40.1 bits (20), Expect = 0.41
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 940 taatatattattactacatcttgt 963
|||| |||||||||||||||||||
Sbjct: 152771 taatgtattattactacatcttgt 152748
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 155,521
Number of Sequences: 392609
Number of extensions: 155521
Number of successful extensions: 10887
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10848
Number of HSP's gapped (non-prelim): 39
length of query: 1155
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1135
effective length of database: 433,880,813
effective search space: 492454722755
effective search space used: 492454722755
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)