BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440806.2.1
(1136 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF632852.1|BF632852 NF044E06DT1F1051 Drought Medicago tr... 42 0.10
gb|BF646326.1|BF646326 NF068H09EC1F1079 Elicited cell cultu... 42 0.10
gb|BI308649.1|BI308649 EST530059 GPOD Medicago truncatula c... 42 0.10
gb|CA917586.1|CA917586 EST641733 GPOD Medicago truncatula c... 42 0.10
gb|CB891668.1|CB891668 EST648637 KV3 Medicago truncatula cD... 42 0.10
gb|AC148344.22| Medicago truncatula clone mth2-21b15, WORKI... 40 0.40
>gb|BF632852.1|BF632852 NF044E06DT1F1051 Drought Medicago truncatula cDNA clone NF044E06DT
5', mRNA sequence
Length = 573
Score = 42.1 bits (21), Expect = 0.10
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 625 ccagtgcgtgtagtcgttgttcaccacgtggaa 657
|||||| |||||||| ||||||||||| |||||
Sbjct: 155 ccagtgagtgtagtcattgttcaccacatggaa 123
>gb|BF646326.1|BF646326 NF068H09EC1F1079 Elicited cell culture Medicago truncatula cDNA
clone NF068H09EC 5', mRNA sequence
Length = 662
Score = 42.1 bits (21), Expect = 0.10
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 625 ccagtgcgtgtagtcgttgttcaccacgtggaa 657
|||||| |||||||| ||||||||||| |||||
Sbjct: 66 ccagtgagtgtagtcattgttcaccacatggaa 34
>gb|BI308649.1|BI308649 EST530059 GPOD Medicago truncatula cDNA clone pGPOD-7D5 5' end,
mRNA sequence
Length = 811
Score = 42.1 bits (21), Expect = 0.10
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 625 ccagtgcgtgtagtcgttgttcaccacgtggaa 657
|||||| |||||||| ||||||||||| |||||
Sbjct: 759 ccagtgagtgtagtcattgttcaccacatggaa 727
>gb|CA917586.1|CA917586 EST641733 GPOD Medicago truncatula cDNA clone GPOD-36L23, mRNA
sequence
Length = 751
Score = 42.1 bits (21), Expect = 0.10
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 625 ccagtgcgtgtagtcgttgttcaccacgtggaa 657
|||||| |||||||| ||||||||||| |||||
Sbjct: 690 ccagtgagtgtagtcattgttcaccacatggaa 722
>gb|CB891668.1|CB891668 EST648637 KV3 Medicago truncatula cDNA clone KV3-51M20, mRNA
sequence
Length = 808
Score = 42.1 bits (21), Expect = 0.10
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 625 ccagtgcgtgtagtcgttgttcaccacgtggaa 657
|||||| |||||||| ||||||||||| |||||
Sbjct: 791 ccagtgagtgtagtcattgttcaccacatggaa 759
>gb|AC148344.22| Medicago truncatula clone mth2-21b15, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 106321
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 278 aatgatgaaagctgcagcct 297
||||||||||||||||||||
Sbjct: 44146 aatgatgaaagctgcagcct 44165
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 116,643
Number of Sequences: 392609
Number of extensions: 116643
Number of successful extensions: 7749
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7742
Number of HSP's gapped (non-prelim): 7
length of query: 1136
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1116
effective length of database: 433,880,813
effective search space: 484210987308
effective search space used: 484210987308
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)