BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2440612.2.2
(665 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE124493.1|BE124493 EST393528 GVN Medicago truncatula cD... 40 0.23
gb|AC135231.23| Medicago truncatula clone mth2-28m10, compl... 40 0.23
gb|AC174294.6| Medicago truncatula clone mth2-71d8, WORKING... 40 0.23
>gb|BE124493.1|BE124493 EST393528 GVN Medicago truncatula cDNA clone pGVN-59F20, mRNA
sequence
Length = 559
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 488 gacgaggaggagcaggagga 507
||||||||||||||||||||
Sbjct: 26 gacgaggaggagcaggagga 7
>gb|AC135231.23| Medicago truncatula clone mth2-28m10, complete sequence
Length = 106771
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 269 tgcttgtgccagcaagcaaa 288
||||||||||||||||||||
Sbjct: 95271 tgcttgtgccagcaagcaaa 95252
>gb|AC174294.6| Medicago truncatula clone mth2-71d8, WORKING DRAFT SEQUENCE, 10
unordered pieces
Length = 151569
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 269 tgcttgtgccagcaagcaaa 288
||||||||||||||||||||
Sbjct: 92032 tgcttgtgccagcaagcaaa 92013
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,118
Number of Sequences: 392609
Number of extensions: 98118
Number of successful extensions: 6086
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6080
Number of HSP's gapped (non-prelim): 6
length of query: 665
length of database: 441,732,993
effective HSP length: 19
effective length of query: 646
effective length of database: 434,273,422
effective search space: 280540630612
effective search space used: 280540630612
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)