BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2440612.2.2
         (665 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BE124493.1|BE124493  EST393528 GVN Medicago truncatula cD...    40   0.23 
gb|AC135231.23|  Medicago truncatula clone mth2-28m10, compl...    40   0.23 
gb|AC174294.6|  Medicago truncatula clone mth2-71d8, WORKING...    40   0.23 
>gb|BE124493.1|BE124493 EST393528 GVN Medicago truncatula cDNA clone pGVN-59F20, mRNA
           sequence
          Length = 559

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 488 gacgaggaggagcaggagga 507
           ||||||||||||||||||||
Sbjct: 26  gacgaggaggagcaggagga 7
>gb|AC135231.23| Medicago truncatula clone mth2-28m10, complete sequence
          Length = 106771

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tgcttgtgccagcaagcaaa 288
             ||||||||||||||||||||
Sbjct: 95271 tgcttgtgccagcaagcaaa 95252
>gb|AC174294.6| Medicago truncatula clone mth2-71d8, WORKING DRAFT SEQUENCE, 10
             unordered pieces
          Length = 151569

 Score = 40.1 bits (20), Expect = 0.23
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 269   tgcttgtgccagcaagcaaa 288
             ||||||||||||||||||||
Sbjct: 92032 tgcttgtgccagcaagcaaa 92013
  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 98,118
Number of Sequences: 392609
Number of extensions: 98118
Number of successful extensions: 6086
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6080
Number of HSP's gapped (non-prelim): 6
length of query: 665
length of database: 441,732,993
effective HSP length: 19
effective length of query: 646
effective length of database: 434,273,422
effective search space: 280540630612
effective search space used: 280540630612
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)