BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437842.2.1
(1093 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW691106.1|AW691106 NF041C08ST1F1000 Developing stem Med... 56 6e-006
gb|BF005122.1|BF005122 EST433620 DSLC Medicago truncatula c... 56 6e-006
gb|BG580544.1|BG580544 EST482271 GVN Medicago truncatula cD... 56 6e-006
gb|BI309413.1|BI309413 EST530823 GPOD Medicago truncatula c... 56 6e-006
gb|BF634495.1|BF634495 NF062B09DT1F1076 Drought Medicago tr... 48 0.002
gb|AA660679.1|AA660679 00568 MtRHE Medicago truncatula cDNA... 44 0.025
gb|AW560940.1|AW560940 EST315988 DSIR Medicago truncatula c... 44 0.025
gb|AW329080.2|AW329080 N200284e rootphos(-) Medicago trunca... 44 0.025
gb|AW329105.2|AW329105 N200312e rootphos(-) Medicago trunca... 44 0.025
gb|AW329421.2|AW329421 N200656e rootphos(-) Medicago trunca... 44 0.025
gb|AW776415.1|AW776415 EST335480 DSIL Medicago truncatula c... 44 0.025
gb|AW687347.2|AW687347 NF008F06RT1F1058 Developing root Med... 44 0.025
gb|BQ165449.1|BQ165449 EST611318 KVKC Medicago truncatula c... 44 0.025
gb|CA917753.1|CA917753 EST641900 GPOD Medicago truncatula c... 44 0.025
gb|CA918666.1|CA918666 EST636384 MTUS Medicago truncatula c... 44 0.025
gb|CA922957.1|CA922957 EST640675 MTUS Medicago truncatula c... 44 0.025
gb|DW019115.1|DW019115 EST1228076 MTY Medicago truncatula c... 44 0.025
>gb|AW691106.1|AW691106 NF041C08ST1F1000 Developing stem Medicago truncatula cDNA clone
NF041C08ST 5', mRNA sequence
Length = 656
Score = 56.0 bits (28), Expect = 6e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 325 atgaaaggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggatgg 384
|||||||| || || ||||| || ||||||||||||| || || || || || ||||||
Sbjct: 264 atgaaaggatacctaaatgaccctgaggcgacaaagagaactatagacaaagaaggatgg 323
Query: 385 ctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttga 440
|| ||||| || |||||||||| | |||||||||||||| ||||||| |||||
Sbjct: 324 ctacacacaggtgacattggtttaattgacgacgacgacgaactcttcattgttga 379
>gb|BF005122.1|BF005122 EST433620 DSLC Medicago truncatula cDNA clone pDSLC-31I2, mRNA
sequence
Length = 453
Score = 56.0 bits (28), Expect = 6e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 325 atgaaaggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggatgg 384
|||||||| || || ||||| || ||||||||||||| || || || || || ||||||
Sbjct: 162 atgaaaggatacctaaatgaccctgaggcgacaaagagaactatagacaaagaaggatgg 221
Query: 385 ctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttga 440
|| ||||| || |||||||||| | |||||||||||||| ||||||| |||||
Sbjct: 222 ctacacacaggtgacattggtttaattgacgacgacgacgaactcttcattgttga 277
>gb|BG580544.1|BG580544 EST482271 GVN Medicago truncatula cDNA clone pGVN-57J18 5' end,
mRNA sequence
Length = 567
Score = 56.0 bits (28), Expect = 6e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 325 atgaaaggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggatgg 384
|||||||| || || ||||| || ||||||||||||| || || || || || ||||||
Sbjct: 209 atgaaaggatacctaaatgaccctgaggcgacaaagagaactatagacaaagaaggatgg 268
Query: 385 ctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttga 440
|| ||||| || |||||||||| | |||||||||||||| ||||||| |||||
Sbjct: 269 ctacacacaggtgacattggtttaattgacgacgacgacgaactcttcattgttga 324
>gb|BI309413.1|BI309413 EST530823 GPOD Medicago truncatula cDNA clone pGPOD-11L1 5' end,
mRNA sequence
Length = 644
Score = 56.0 bits (28), Expect = 6e-006
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 325 atgaaaggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggatgg 384
|||||||| || || ||||| || ||||||||||||| || || || || || ||||||
Sbjct: 114 atgaaaggatacctaaatgaccctgaggcgacaaagagaactatagacaaagaaggatgg 173
Query: 385 ctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttga 440
|| ||||| || |||||||||| | |||||||||||||| ||||||| |||||
Sbjct: 174 ctacacacaggtgacattggtttaattgacgacgacgacgaactcttcattgttga 229
>gb|BF634495.1|BF634495 NF062B09DT1F1076 Drought Medicago truncatula cDNA clone NF062B09DT
5', mRNA sequence
Length = 623
Score = 48.1 bits (24), Expect = 0.002
Identities = 93/116 (80%)
Strand = Plus / Plus
Query: 325 atgaaaggttatctgaatgatccagaggcgacaaagaacaccattgataaggacggatgg 384
|||||||| || || ||||| || ||||||||||| | || || || || || ||||||
Sbjct: 381 atgaaaggatacctaaatgaccctgaggcgacaaatagaactatagacaaagaaggatgg 440
Query: 385 ctgcacactggggacattggttacgtggacgacgacgacgagatcttcatcgttga 440
|| ||||| || |||||||||| | |||||||||||||| ||||||| |||||
Sbjct: 441 ctacacacaggtgacattggtttaattgacgacgacgacgaactcttcattgttga 496
>gb|AA660679.1|AA660679 00568 MtRHE Medicago truncatula cDNA 5' similar to 4-coumarate-CoA
ligase, mRNA sequence
Length = 645
Score = 44.1 bits (22), Expect = 0.025
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 313 ggcgaacaaatcatgaaaggttatct 338
||||| ||||||||||||||||||||
Sbjct: 317 ggcgaccaaatcatgaaaggttatct 342
>gb|AW560940.1|AW560940 EST315988 DSIR Medicago truncatula cDNA clone pDSIR-30H13, mRNA
sequence
Length = 655
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 304 tgcatccgcggcgaacaaatcatgaaaggttatctgaatgat 345
||||| || ||| |||||||||||||||| ||| ||||||||
Sbjct: 349 tgcatacgtggccaacaaatcatgaaaggatatttgaatgat 390
>gb|AW329080.2|AW329080 N200284e rootphos(-) Medicago truncatula cDNA clone MHRP-16A8, mRNA
sequence
Length = 561
Score = 44.1 bits (22), Expect = 0.025
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 313 ggcgaacaaatcatgaaaggttatctgaatgatc 346
||||| ||||| |||||||||||||| |||||||
Sbjct: 409 ggcgaccaaattatgaaaggttatctaaatgatc 442
>gb|AW329105.2|AW329105 N200312e rootphos(-) Medicago truncatula cDNA clone MHRP-16C12,
mRNA sequence
Length = 457
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 304 tgcatccgcggcgaacaaatcatgaaaggttatctgaatgat 345
||||| || ||| |||||||||||||||| ||| ||||||||
Sbjct: 224 tgcatacgtggccaacaaatcatgaaaggatatttgaatgat 265
>gb|AW329421.2|AW329421 N200656e rootphos(-) Medicago truncatula cDNA clone MHRP-19H8, mRNA
sequence
Length = 590
Score = 44.1 bits (22), Expect = 0.025
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 313 ggcgaacaaatcatgaaaggttatct 338
||||| ||||||||||||||||||||
Sbjct: 366 ggcgaccaaatcatgaaaggttatct 391
>gb|AW776415.1|AW776415 EST335480 DSIL Medicago truncatula cDNA clone pDSIL-7H14, mRNA
sequence
Length = 618
Score = 44.1 bits (22), Expect = 0.025
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 313 ggcgaacaaatcatgaaaggttatct 338
||||| ||||||||||||||||||||
Sbjct: 26 ggcgaccaaatcatgaaaggttatct 51
>gb|AW687347.2|AW687347 NF008F06RT1F1058 Developing root Medicago truncatula cDNA clone
NF008F06RT 5', mRNA sequence
Length = 542
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 304 tgcatccgcggcgaacaaatcatgaaaggttatctgaatgat 345
||||| || ||| |||||||||||||||| ||| ||||||||
Sbjct: 222 tgcatacgtggccaacaaatcatgaaaggatatttgaatgat 263
>gb|BQ165449.1|BQ165449 EST611318 KVKC Medicago truncatula cDNA clone pKVKC-9C6, mRNA
sequence
Length = 699
Score = 44.1 bits (22), Expect = 0.025
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 304 tgcatccgcggcgaacaaatcatgaaaggttatctgaatgat 345
||||| || ||| |||||||||||||||| ||| ||||||||
Sbjct: 345 tgcatacgtggccaacaaatcatgaaaggatatttgaatgat 386
>gb|CA917753.1|CA917753 EST641900 GPOD Medicago truncatula cDNA clone GPOD-37M9, mRNA
sequence
Length = 628
Score = 44.1 bits (22), Expect = 0.025
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 313 ggcgaacaaatcatgaaaggttatct 338
||||| ||||||||||||||||||||
Sbjct: 377 ggcgaccaaatcatgaaaggttatct 402
>gb|CA918666.1|CA918666 EST636384 MTUS Medicago truncatula cDNA clone MTUS-1E11, mRNA
sequence
Length = 834
Score = 44.1 bits (22), Expect = 0.025
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 313 ggcgaacaaatcatgaaaggttatct 338
||||| ||||||||||||||||||||
Sbjct: 635 ggcgaccaaatcatgaaaggttatct 610
>gb|CA922957.1|CA922957 EST640675 MTUS Medicago truncatula cDNA clone MTUS-60G10, mRNA
sequence
Length = 782
Score = 44.1 bits (22), Expect = 0.025
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 313 ggcgaacaaatcatgaaaggttatct 338
||||| ||||||||||||||||||||
Sbjct: 573 ggcgaccaaatcatgaaaggttatct 548
>gb|DW019115.1|DW019115 EST1228076 MTY Medicago truncatula cDNA clone MTYBF07, mRNA
sequence
Length = 765
Score = 44.1 bits (22), Expect = 0.025
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 313 ggcgaacaaatcatgaaaggttatct 338
||||| ||||||||||||||||||||
Sbjct: 367 ggcgaccaaatcatgaaaggttatct 392
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 196,329
Number of Sequences: 392609
Number of extensions: 196329
Number of successful extensions: 12906
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12880
Number of HSP's gapped (non-prelim): 25
length of query: 1093
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1073
effective length of database: 433,880,813
effective search space: 465554112349
effective search space used: 465554112349
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)