BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419417.2.5
(733 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE942254.1|BE942254 EST421833 MGHG Medicago truncatula c... 40 0.26
gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone m... 40 0.26
>gb|BE942254.1|BE942254 EST421833 MGHG Medicago truncatula cDNA clone pMGHG-7P12, mRNA
sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 atcactgaaaatgggatgga 75
||||||||||||||||||||
Sbjct: 384 atcactgaaaatgggatgga 403
>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete
sequence
Length = 172016
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 579 atcaatgtaaaataatgtta 598
||||||||||||||||||||
Sbjct: 5317 atcaatgtaaaataatgtta 5298
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 125,387
Number of Sequences: 392609
Number of extensions: 125387
Number of successful extensions: 9345
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9339
Number of HSP's gapped (non-prelim): 6
length of query: 733
length of database: 441,732,993
effective HSP length: 19
effective length of query: 714
effective length of database: 434,273,422
effective search space: 310071223308
effective search space used: 310071223308
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)