BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.4
(582 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC158504.10| Medicago truncatula clone mth2-151m4, compl... 42 0.051
emb|CR330023.1| mte1-59L9RM1 BAC end, cultivar Jemalong A17... 40 0.20
gb|AC146308.2| Medicago truncatula clone mth2-10a12, comple... 40 0.20
gb|AC147202.14| Medicago truncatula clone mth2-165g15, comp... 40 0.20
gb|AC148171.16| Medicago truncatula clone mth2-30a2, comple... 40 0.20
gb|AC137554.14| Medicago truncatula clone mth2-17j18, compl... 40 0.20
>gb|AC158504.10| Medicago truncatula clone mth2-151m4, complete sequence
Length = 117136
Score = 42.1 bits (21), Expect = 0.051
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 21 ttaataatttataatttcaat 41
|||||||||||||||||||||
Sbjct: 55678 ttaataatttataatttcaat 55658
>emb|CR330023.1| mte1-59L9RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 616
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 7 aaacaaacacaccattaata 26
||||||||||||||||||||
Sbjct: 413 aaacaaacacaccattaata 394
>gb|AC146308.2| Medicago truncatula clone mth2-10a12, complete sequence
Length = 112733
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 aaacaaacacaccattaataattt 30
||||||||||||| ||||||||||
Sbjct: 95410 aaacaaacacacccttaataattt 95433
>gb|AC147202.14| Medicago truncatula clone mth2-165g15, complete sequence
Length = 116731
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 238 agcactaccaaactaatcaa 257
||||||||||||||||||||
Sbjct: 85220 agcactaccaaactaatcaa 85239
>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence
Length = 158384
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 14 cacaccattaataatttataattt 37
|||||||||||| |||||||||||
Sbjct: 37584 cacaccattaattatttataattt 37561
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 14 cacaccattaataatttataattt 37
|||||||||||| |||||||||||
Sbjct: 37006 cacaccattaattatttataattt 36983
>gb|AC137554.14| Medicago truncatula clone mth2-17j18, complete sequence
Length = 121249
Score = 40.1 bits (20), Expect = 0.20
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 7 aaacaaacacaccattaataattt 30
||||||||||||| ||||||||||
Sbjct: 74671 aaacaaacacacccttaataattt 74648
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 105,180
Number of Sequences: 392609
Number of extensions: 105180
Number of successful extensions: 9870
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9838
Number of HSP's gapped (non-prelim): 32
length of query: 582
length of database: 441,732,993
effective HSP length: 19
effective length of query: 563
effective length of database: 434,273,422
effective search space: 244495936586
effective search space used: 244495936586
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)