BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419390.2.1
(1603 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 64 4e-008
gb|AJ548235.1|AJ548235 AJ548235 MTAPHEU Medicago truncatula... 50 6e-004
gb|AJ500506.1|AJ500506 AJ500506 MTGIM Medicago truncatula c... 48 0.002
gb|AJ500761.1|AJ500761 AJ500761 MTGIM Medicago truncatula c... 48 0.002
gb|AJ499850.1|AJ499850 AJ499850 MTGIM Medicago truncatula c... 44 0.036
gb|AJ500204.1|AJ500204 AJ500204 MTGIM Medicago truncatula c... 42 0.14
gb|AJ500573.1|AJ500573 AJ500573 MTGIM Medicago truncatula c... 42 0.14
gb|AJ500679.1|AJ500679 AJ500679 MTGIM Medicago truncatula c... 42 0.14
gb|AJ500879.1|AJ500879 AJ500879 MTGIM Medicago truncatula c... 42 0.14
gb|AJ499178.1|AJ499178 AJ499178 MTGIM Medicago truncatula c... 42 0.14
gb|AJ499762.1|AJ499762 AJ499762 MTGIM Medicago truncatula c... 42 0.14
gb|AJ846439.1|AJ846439 AJ846439 MtSCF Medicago truncatula c... 42 0.14
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 42 0.14
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03, mRNA
sequence
Length = 614
Score = 63.9 bits (32), Expect = 4e-008
Identities = 34/35 (97%)
Strand = Plus / Minus
Query: 1568 ttttgagacccgcgtacctcggccgngaccacgct 1602
||||||||||||||||||||||||| |||||||||
Sbjct: 261 ttttgagacccgcgtacctcggccgcgaccacgct 227
>gb|AJ548235.1|AJ548235 AJ548235 MTAPHEU Medicago truncatula cDNA clone mtaehac110002e11,
mRNA sequence
Length = 90
Score = 50.1 bits (25), Expect = 6e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1576 cccgcgtacctcggccgngaccacgcta 1603
||||||||||||||||| ||||||||||
Sbjct: 41 cccgcgtacctcggccgcgaccacgcta 14
>gb|AJ500506.1|AJ500506 AJ500506 MTGIM Medicago truncatula cDNA clone mtgmacc120017b07, mRNA
sequence
Length = 337
Score = 48.1 bits (24), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1576 cccgcgtacctcggccgngaccacgct 1602
||||||||||||||||| |||||||||
Sbjct: 27 cccgcgtacctcggccgcgaccacgct 1
>gb|AJ500761.1|AJ500761 AJ500761 MTGIM Medicago truncatula cDNA clone mtgmacc120019h09, mRNA
sequence
Length = 337
Score = 48.1 bits (24), Expect = 0.002
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 1576 cccgcgtacctcggccgngaccacgct 1602
||||||||||||||||| |||||||||
Sbjct: 27 cccgcgtacctcggccgcgaccacgct 1
>gb|AJ499850.1|AJ499850 AJ499850 MTGIM Medicago truncatula cDNA clone mtgmacc120009c12, mRNA
sequence
Length = 338
Score = 44.1 bits (22), Expect = 0.036
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1579 gcgtacctcggccgngaccacgcta 1603
|||||||||||||| ||||||||||
Sbjct: 314 gcgtacctcggccgcgaccacgcta 338
>gb|AJ500204.1|AJ500204 AJ500204 MTGIM Medicago truncatula cDNA clone mtgmacc120013h03, mRNA
sequence
Length = 337
Score = 42.1 bits (21), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1580 cgtacctcggccgngaccacgcta 1603
||||||||||||| ||||||||||
Sbjct: 314 cgtacctcggccgcgaccacgcta 337
>gb|AJ500573.1|AJ500573 AJ500573 MTGIM Medicago truncatula cDNA clone mtgmacc120017h06, mRNA
sequence
Length = 350
Score = 42.1 bits (21), Expect = 0.14
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1576 cccgcgtacctcggccgngaccacgcta 1603
||||||||||||||||| |||||||||
Sbjct: 323 cccgcgtacctcggccgcaaccacgcta 350
>gb|AJ500679.1|AJ500679 AJ500679 MTGIM Medicago truncatula cDNA clone mtgmacc120019a08, mRNA
sequence
Length = 385
Score = 42.1 bits (21), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1576 cccgcgtacctcggccgngaccac 1599
||||||||||||||||| ||||||
Sbjct: 26 cccgcgtacctcggccgcgaccac 3
>gb|AJ500879.1|AJ500879 AJ500879 MTGIM Medicago truncatula cDNA clone mtgmacc120021b11, mRNA
sequence
Length = 332
Score = 42.1 bits (21), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1580 cgtacctcggccgngaccacgcta 1603
||||||||||||| ||||||||||
Sbjct: 309 cgtacctcggccgcgaccacgcta 332
>gb|AJ499178.1|AJ499178 AJ499178 MTGIM Medicago truncatula cDNA clone mtgmacc120001a10, mRNA
sequence
Length = 437
Score = 42.1 bits (21), Expect = 0.14
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1576 cccgcgtacctcggccgngaccacgcta 1603
||||||||||||||||| || |||||||
Sbjct: 410 cccgcgtacctcggccgagaacacgcta 437
>gb|AJ499762.1|AJ499762 AJ499762 MTGIM Medicago truncatula cDNA clone mtgmacc120008b12, mRNA
sequence
Length = 350
Score = 42.1 bits (21), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1580 cgtacctcggccgngaccacgcta 1603
||||||||||||| ||||||||||
Sbjct: 327 cgtacctcggccgcgaccacgcta 350
>gb|AJ846439.1|AJ846439 AJ846439 MtSCF Medicago truncatula cDNA clone MtCF02N11S6, mRNA
sequence
Length = 476
Score = 42.1 bits (21), Expect = 0.14
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 1576 cccgcgtacctcggccgngaccacgcta 1603
||||||||||||||||| || |||||||
Sbjct: 28 cccgcgtacctcggccgagaacacgcta 1
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA clone
MtGmEs470, mRNA sequence
Length = 1151
Score = 42.1 bits (21), Expect = 0.14
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1580 cgtacctcggccgngaccacgcta 1603
||||||||||||| ||||||||||
Sbjct: 526 cgtacctcggccgcgaccacgcta 549
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 375,976
Number of Sequences: 392609
Number of extensions: 375976
Number of successful extensions: 29047
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29033
Number of HSP's gapped (non-prelim): 14
length of query: 1603
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1583
effective length of database: 433,880,813
effective search space: 686833326979
effective search space used: 686833326979
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)