BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419355.2.1
(1174 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BM779973.1|BM779973 EST590549 KV2 Medicago truncatula cD... 125 9e-027
gb|AJ500850.1|AJ500850 AJ500850 MTGIM Medicago truncatula c... 113 3e-023
gb|AJ497459.1|AJ497459 AJ497459 MTFLOW Medicago truncatula ... 101 1e-019
gb|BG644335.1|BG644335 EST505954 KV3 Medicago truncatula cD... 76 7e-012
gb|AC146651.10| Medicago truncatula clone mth2-113d3, compl... 74 3e-011
gb|BF632692.1|BF632692 NF039A11DT1F1082 Drought Medicago tr... 62 1e-007
gb|BG449580.1|BG449580 NF054D02IN1F1016 Insect herbivory Me... 60 4e-007
emb|CR337399.1| mte1-68J12RM1 BAC end, cultivar Jemalong A1... 48 0.002
emb|CR345669.1| mte1-79D10FM1 BAC end, cultivar Jemalong A1... 48 0.002
gb|AC148655.4| Medicago truncatula clone mth2-61c11, comple... 48 0.002
gb|AC150980.20| Medicago truncatula clone mth2-165j9, compl... 48 0.002
gb|AC126782.23| Medicago truncatula clone mth2-14p11, compl... 48 0.002
gb|AC152156.30| Medicago truncatula clone mth2-136k22, WORK... 48 0.002
gb|AW774187.1|AW774187 EST333270 KV3 Medicago truncatula cD... 46 0.007
gb|BE203677.1|BE203677 EST396353 KV0 Medicago truncatula cD... 46 0.007
gb|CX530935.1|CX530935 s13dNF35D06MJ047_248011 Methyl Jasmo... 46 0.007
gb|AC161032.19| Medicago truncatula clone mth2-21b7, comple... 46 0.007
gb|AC140913.25| Medicago truncatula clone mth2-26h9, comple... 44 0.026
gb|AL379678.1|AL379678 MtBB46G07F1 MtBB Medicago truncatula... 40 0.41
gb|AC138130.9| Medicago truncatula clone mth2-31d24, comple... 40 0.41
gb|AC167034.7| Medicago truncatula clone mth2-171k9, WORKIN... 40 0.41
>gb|BM779973.1|BM779973 EST590549 KV2 Medicago truncatula cDNA clone pKV2-53H15, mRNA
sequence
Length = 871
Score = 125 bits (63), Expect = 9e-027
Identities = 226/279 (81%), Gaps = 1/279 (0%)
Strand = Plus / Minus
Query: 54 ggccccccaggaacaggaaagac-aatgctggcaaaagcggtcgctactgagtgcaaaac 112
||||||||||| || |||||||| |||||| ||||| || || || ||||||||||| ||
Sbjct: 871 ggccccccagggactggaaagaccaatgcttgcaaaggcagttgcaactgagtgcaacac 812
Query: 113 caccttcttcaacatttcagcatcatcaattgtcagcaaatggcgtggagattcagagaa 172
|| || || || ||||||||||| || || ||||||||||||| || |||||||||||
Sbjct: 811 tacattttttaatatttcagcatcgtctatgttcagcaaatggcgaggtgattcagagaa 752
Query: 173 gcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatccacaatattccttga 232
| | || || || | ||||||||||| |||||||| || || | |||||||| |||||
Sbjct: 751 gttagtaaaggtgttatttgagcttgcaaggcatcacgcgcccgcaacaatatttcttga 692
Query: 233 tgaaatagatgctatcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcg 292
||||| ||||| ||||| || || |||||||| | |||||||| ||||| || ||| |
Sbjct: 691 cgaaattgatgcaatcattagtcaacgtggtgaggggcgcagtgaacatgaagcaagtag 632
Query: 293 tcgcttgaagactgagctacttattcagatggatggttt 331
|| || || ||||| ||||| |||||||||||||||||
Sbjct: 631 acggttaaaaactgaactactcattcagatggatggttt 593
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Minus
Query: 369 acaaatcttccctgggaattggatgcagccatgctccgccggcttgagaagcggattctt 428
||||||||||||||||||||||||||||||||||| | || ||||||||||| || |||
Sbjct: 555 acaaatcttccctgggaattggatgcagccatgcttagacgtcttgagaagcgaatcctt 496
Query: 429 gtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaact 475
||||||||||| ||| |||||||| ||| ||||||||||||||
Sbjct: 495 gtaccgcttccagaaccagaagcaagaagagcaatgtttgaggaact 449
>gb|AJ500850.1|AJ500850 AJ500850 MTGIM Medicago truncatula cDNA clone mtgmacc120020h04,
mRNA sequence
Length = 309
Score = 113 bits (57), Expect = 3e-023
Identities = 225/281 (80%)
Strand = Plus / Plus
Query: 153 tggcgtggagattcagagaagcttgtcaaagttctgtttgagcttgctaggcatcatgca 212
||||| || |||||||||||| | || || || | ||||||||||| |||||||| ||
Sbjct: 11 tggcgaggtgattcagagaagttagtaaaggtgttatttgagcttgcaaggcatcacgcg 70
Query: 213 ccatccacaatattccttgatgaaatagatgctatcatcagccagcgtggtgaagctcgc 272
|| | |||||||| ||||| ||||| ||||| ||||| || || |||||||| | |||
Sbjct: 71 cccgcaacaatatttcttgacgaaattgatgcaatcattagtcaacgtggtgaggggcgc 130
Query: 273 agtgagcatgaggctagtcgtcgcttgaagactgagctacttattcagatggatggtttg 332
||||| ||||| || ||| | || || || ||||| ||||| ||||||||||||||||||
Sbjct: 131 agtgaacatgaagcaagtagacggttaaaaactgaactactcattcagatggatggtttg 190
Query: 333 acaaagacaaacgacttggtatttgtacttgcagctacaaatcttccctgggaattggat 392
|| ||| | || | || ||||| | || || ||||||||||||||||||||||||
Sbjct: 191 gcacggacggatgaacttgtttttgttttggcggcaacaaatcttccctgggaattggat 250
Query: 393 gcagccatgctccgccggcttgagaagcggattcttgtacc 433
||||||||||| | || ||||||||||| || ||||||||
Sbjct: 251 gcagccatgcttagacgtcttgagaagcgaatccttgtacc 291
>gb|AJ497459.1|AJ497459 AJ497459 MTFLOW Medicago truncatula cDNA clone mt--abc955109e10,
mRNA sequence
Length = 591
Score = 101 bits (51), Expect = 1e-019
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 369 acaaatcttccctgggaattggatgcagccatgctccgccggcttgagaagcggattctt 428
||||||||||||||||||||||||||||||||||| | || ||||||||||| || |||
Sbjct: 9 acaaatcttccctgggaattggatgcagccatgcttagacgtcttgagaagcgaatcctt 68
Query: 429 gtaccgcttcctgaaggtgaagcaaggcaagcgatgtttgaggaact 475
||||||||||| ||| |||||||| ||| ||||||||||||||
Sbjct: 69 gtaccgcttccagaaccagaagcaagaagagcaatgtttgaggaact 115
>gb|BG644335.1|BG644335 EST505954 KV3 Medicago truncatula cDNA clone pKV3-37A7 5' end, mRNA
sequence
Length = 566
Score = 75.8 bits (38), Expect = 7e-012
Identities = 83/98 (84%)
Strand = Plus / Minus
Query: 376 ttccctgggaattggatgcagccatgctccgccggcttgagaagcggattcttgtaccgc 435
||||||||||| |||||||||| |||||||| || |||||||||||||| ||||| || |
Sbjct: 386 ttccctgggaactggatgcagcaatgctccgacgtcttgagaagcggatccttgtgcccc 327
Query: 436 ttcctgaaggtgaagcaaggcaagcgatgtttgaggaa 473
|||| || | ||||||||| | |||||||||||||
Sbjct: 326 ttccggaggcagaagcaaggtgcgggatgtttgaggaa 289
Score = 61.9 bits (31), Expect = 1e-007
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 201 aggcatcatgcaccatccacaatattccttgatgaaatagatgctatcatcagccagcgt 260
|||||||||||||| || || || || || |||||||| ||||| || ||||| || |||
Sbjct: 563 aggcatcatgcaccttcaaccatctttctcgatgaaattgatgccattatcagtcaacgt 504
Query: 261 ggtgaagctcgcagtgagcatga 283
|| ||||| ||||||||||||||
Sbjct: 503 ggggaagcgcgcagtgagcatga 481
>gb|AC146651.10| Medicago truncatula clone mth2-113d3, complete sequence
Length = 157296
Score = 73.8 bits (37), Expect = 3e-011
Identities = 49/53 (92%)
Strand = Plus / Minus
Query: 369 acaaatcttccctgggaattggatgcagccatgctccgccggcttgagaagcg 421
||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 45934 acaaatcttccctgggaattggatgcagccatgcttagacgtcttgagaagcg 45882
Score = 65.9 bits (33), Expect = 7e-009
Identities = 72/85 (84%)
Strand = Plus / Minus
Query: 73 agacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttcaacatttcag 132
|||||||||| ||||| || || || ||||||||||| || || || || || |||||||
Sbjct: 48224 agacaatgcttgcaaaggcagttgcaactgagtgcaacactacattttttaatatttcag 48165
Query: 133 catcatcaattgtcagcaaatggcg 157
|||| || |||||||||||||||||
Sbjct: 48164 catcgtctattgtcagcaaatggcg 48140
Score = 56.0 bits (28), Expect = 7e-006
Identities = 106/132 (80%)
Strand = Plus / Minus
Query: 189 tttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagatgctatc 248
||||||||||| |||||||| || || | |||||||| ||||| ||||| ||||| |||
Sbjct: 47104 tttgagcttgcaaggcatcacgcgcccgcaacaatatttcttgacgaaattgatgcaatc 47045
Query: 249 atcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaagactgag 308
|| || || |||||||| | |||||||| ||||| || ||| | || || || |||||
Sbjct: 47044 attagtcaacgtggtgaggggcgcagtgaacatgaagcaagtagacggttaaaaactgaa 46985
Query: 309 ctacttattcag 320
||||| ||||||
Sbjct: 46984 ctactcattcag 46973
>gb|BF632692.1|BF632692 NF039A11DT1F1082 Drought Medicago truncatula cDNA clone NF039A11DT
5', mRNA sequence
Length = 628
Score = 61.9 bits (31), Expect = 1e-007
Identities = 93/111 (83%), Gaps = 2/111 (1%)
Strand = Plus / Plus
Query: 48 ctttttggccccccaggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgc 107
|||||||| |||||||| || |||||||||||||| ||||| || || || |||||||||
Sbjct: 471 ctttttgggcccccagggactggaaagacaatgcttgcaaaggcagttgcaactgagtgc 530
Query: 108 aaaaccaccttcttcaaca-tttcagcatcatcaattgtcagcaaatggcg 157
|| || || || || || | |||||||||| || ||||||| |||||||||
Sbjct: 531 aacactacattttttaatattttcagcatcgtctattgtca-caaatggcg 580
>gb|BG449580.1|BG449580 NF054D02IN1F1016 Insect herbivory Medicago truncatula cDNA clone
NF054D02IN 5', mRNA sequence
Length = 668
Score = 60.0 bits (30), Expect = 4e-007
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 48 ctttttggccccccaggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgc 107
|||||||| |||||||| || |||||||||||||| ||||| || || || |||||||||
Sbjct: 583 ctttttgggcccccagggactggaaagacaatgcttgcaaaggcagttgcaactgagtgc 642
Query: 108 aa 109
||
Sbjct: 643 aa 644
>emb|CR337399.1| mte1-68J12RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 480
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 51 tttggccccccaggaacaggaaagacaatgct 82
||||| |||||||||||||| |||||||||||
Sbjct: 432 tttggtcccccaggaacaggtaagacaatgct 401
>emb|CR345669.1| mte1-79D10FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 695
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 51 tttggccccccaggaacaggaaagacaatgct 82
||||| |||||||||||||| |||||||||||
Sbjct: 448 tttggtcccccaggaacaggtaagacaatgct 417
>gb|AC148655.4| Medicago truncatula clone mth2-61c11, complete sequence
Length = 89884
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 45 ttactttttggccccccaggaacaggaaagacaatgctggcaaa 88
||||||||||| || || || ||||||||||||||||| |||||
Sbjct: 87666 ttactttttggacctcctggtacaggaaagacaatgctcgcaaa 87623
>gb|AC150980.20| Medicago truncatula clone mth2-165j9, complete sequence
Length = 119548
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 45 ttactttttggccccccaggaacaggaaagacaatgctggcaaa 88
||||||||||| || || || ||||||||||||||||| |||||
Sbjct: 117195 ttactttttggacctcctggtacaggaaagacaatgctcgcaaa 117238
>gb|AC126782.23| Medicago truncatula clone mth2-14p11, complete sequence
Length = 135659
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 51 tttggccccccaggaacaggaaagacaatgct 82
||||| |||||||||||||| |||||||||||
Sbjct: 89284 tttggtcccccaggaacaggtaagacaatgct 89253
>gb|AC152156.30| Medicago truncatula clone mth2-136k22, WORKING DRAFT SEQUENCE, 7
unordered pieces
Length = 293363
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 53 tggccccccaggaacaggaaagacaatg 80
|||||| |||||||||||||||||||||
Sbjct: 34748 tggccctccaggaacaggaaagacaatg 34721
>gb|AW774187.1|AW774187 EST333270 KV3 Medicago truncatula cDNA clone pKV3-21L21, mRNA
sequence
Length = 607
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 48 ctttttggccccccaggaacaggaaagacaatgctggcaaaagcggt 94
|||||||||||||| || || ||||| |||||||| ||||| |||||
Sbjct: 264 ctttttggcccccctggcacgggaaaaacaatgcttgcaaaggcggt 310
>gb|BE203677.1|BE203677 EST396353 KV0 Medicago truncatula cDNA clone pKV0-11M3, mRNA
sequence
Length = 471
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 48 ctttttggccccccaggaacaggaaagacaatgctggcaaaagcggt 94
|||||||||||||| || || ||||| |||||||| ||||| |||||
Sbjct: 93 ctttttggcccccctggcacgggaaaaacaatgcttgcaaaggcggt 139
>gb|CX530935.1|CX530935 s13dNF35D06MJ047_248011 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 585
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 48 ctttttggccccccaggaacaggaaagacaatgctggcaaaagcggt 94
|||||||||||||| || || ||||| |||||||| ||||| |||||
Sbjct: 240 ctttttggcccccctggcacgggaaaaacaatgcttgcaaaggcggt 286
>gb|AC161032.19| Medicago truncatula clone mth2-21b7, complete sequence
Length = 130355
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 48 ctttttggccccccaggaacaggaaagacaatgctggcaaaagcggt 94
|||||||||||||| || || ||||| |||||||| ||||| |||||
Sbjct: 38460 ctttttggcccccctggcacgggaaaaacaatgcttgcaaaggcggt 38506
>gb|AC140913.25| Medicago truncatula clone mth2-26h9, complete sequence
Length = 124828
Score = 44.1 bits (22), Expect = 0.026
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 63 ggaacaggaaagacaatgctggcaaa 88
||||||||||| ||||||||||||||
Sbjct: 70845 ggaacaggaaaaacaatgctggcaaa 70870
>gb|AL379678.1|AL379678 MtBB46G07F1 MtBB Medicago truncatula cDNA clone MtBB46G07 T3, mRNA
sequence
Length = 376
Score = 40.1 bits (20), Expect = 0.41
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 48 ctttttggccccccaggaacaggaaagacaatgctggcaaaagc 91
|||| ||||||||| ||| ||||||||| |||||||||||||
Sbjct: 159 ctttgtggcccccctggagtgggaaagacattgctggcaaaagc 202
>gb|AC138130.9| Medicago truncatula clone mth2-31d24, complete sequence
Length = 146386
Score = 40.1 bits (20), Expect = 0.41
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 48 ctttttggccccccaggaacaggaaagacaatgctggcaaaagc 91
|||| ||||||||| ||| ||||||||| |||||||||||||
Sbjct: 128306 ctttgtggcccccctggagtgggaaagacattgctggcaaaagc 128263
>gb|AC167034.7| Medicago truncatula clone mth2-171k9, WORKING DRAFT SEQUENCE, 8
unordered pieces
Length = 74202
Score = 40.1 bits (20), Expect = 0.41
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 53 tggccccccaggaacaggaaagacaatg 80
|||||| ||||||||||| |||||||||
Sbjct: 40070 tggccctccaggaacagggaagacaatg 40097
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 284,795
Number of Sequences: 392609
Number of extensions: 284795
Number of successful extensions: 21051
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20951
Number of HSP's gapped (non-prelim): 98
length of query: 1174
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1154
effective length of database: 433,880,813
effective search space: 500698458202
effective search space used: 500698458202
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)