BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2418946.2.2
(710 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL381590.1|AL381590 MtBC01H02R2 MtBC Medicago truncatula... 48 0.001
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 48 0.001
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 48 0.001
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 42 0.063
gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula c... 40 0.25
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 40 0.25
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 40 0.25
gb|AJ500539.1|AJ500539 AJ500539 MTGIM Medicago truncatula c... 40 0.25
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 40 0.25
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 40 0.25
gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula c... 40 0.25
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 40 0.25
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 40 0.25
>gb|AL381590.1|AL381590 MtBC01H02R2 MtBC Medicago truncatula cDNA clone MtBC01H02 T7, mRNA
sequence
Length = 548
Score = 48.1 bits (24), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgca 508
|||||||||||||| ||||||||||| ||| ||||
Sbjct: 305 atgctgttcaaccaagcgttcagcagaggtttgca 339
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete sequence
Length = 103090
Score = 48.1 bits (24), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgca 508
|||||||||||||| ||||||||||| ||| ||||
Sbjct: 10096 atgctgttcaaccaagcgttcagcagaggtttgca 10130
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 48.1 bits (24), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 474 atgctgttcaaccaggcgttcagcagnggtctgca 508
|||||||||||||| ||||||||||| ||| ||||
Sbjct: 81493 atgctgttcaaccaagcgttcagcagaggtttgca 81527
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 42.1 bits (21), Expect = 0.063
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacg 21
|||||||||||||||||||||
Sbjct: 223 gcggccgcccgggcaggtacg 203
>gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula cDNA clone mtgmacc120012g12,
mRNA sequence
Length = 398
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtacg 21
||||||||||||||||||||
Sbjct: 397 cggccgcccgggcaggtacg 378
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 319 gcggccgcccgggcaggtac 300
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 26 gcggccgcccgggcaggtac 45
>gb|AJ500539.1|AJ500539 AJ500539 MTGIM Medicago truncatula cDNA clone mtgmacc120017e07,
mRNA sequence
Length = 489
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 cggccgcccgggcaggtacg 21
||||||||||||||||||||
Sbjct: 4 cggccgcccgggcaggtacg 23
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 309 gcggccgcccgggcaggtac 290
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 320 gcggccgcccgggcaggtac 339
>gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula cDNA clone mtgmacc120004f05,
mRNA sequence
Length = 128
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 cggccgcccgggcaggtacg 21
||||||||||||||||||||
Sbjct: 6 cggccgcccgggcaggtacg 25
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs470, mRNA sequence
Length = 1151
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 278 gcggccgcccgggcaggtac 297
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggtac 24
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 103,391
Number of Sequences: 392609
Number of extensions: 103391
Number of successful extensions: 8051
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8032
Number of HSP's gapped (non-prelim): 19
length of query: 710
length of database: 441,732,993
effective HSP length: 19
effective length of query: 691
effective length of database: 434,273,422
effective search space: 300082934602
effective search space used: 300082934602
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)