BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405341.2.2
(1164 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW774553.1|AW774553 EST333704 KV3 Medicago truncatula cD... 163 4e-038
gb|BG588347.1|BG588347 EST490156 MHRP- Medicago truncatula ... 105 8e-021
gb|BE202389.1|BE202389 EST392838 KV1 Medicago truncatula cD... 58 2e-006
gb|AC146651.10| Medicago truncatula clone mth2-113d3, compl... 48 0.002
gb|CG955856.1|CG955856 MBEDH25TRC mth2 Medicago truncatula ... 44 0.026
gb|CG964762.1|CG964762 MBEAI63TFB mth2 Medicago truncatula ... 44 0.026
gb|AC133779.21| Medicago truncatula clone mth2-27n4, comple... 44 0.026
gb|AC151423.2| Medicago truncatula chromosome 7 clone mth2-... 44 0.026
gb|AC135318.40| Medicago truncatula clone mth2-36o3, WORKIN... 44 0.026
gb|CG945874.1|CG945874 MBEIP16TF mth2 Medicago truncatula g... 42 0.10
gb|AC151522.2| Medicago truncatula chromosome 2 BAC clone m... 42 0.10
gb|AC121245.17| Medicago truncatula clone mth2-33g3, comple... 42 0.10
gb|AC157648.18| Medicago truncatula clone mth2-68d9, comple... 42 0.10
gb|CG956669.1|CG956669 MBECW21TF mth2 Medicago truncatula g... 40 0.41
emb|CR513093.1| mth4-42A7FM2 BAC end, cultivar Jemalong A17... 40 0.41
gb|AW687233.1|AW687233 NF007D09RT1F1077 Developing root Med... 40 0.41
gb|AW687806.2|AW687806 NF013F09RT1F1078 Developing root Med... 40 0.41
gb|BG646817.1|BG646817 EST508436 HOGA Medicago truncatula c... 40 0.41
gb|CA921581.1|CA921581 EST639299 MTUS Medicago truncatula c... 40 0.41
gb|CB894417.1|CB894417 EST647209 HOGA Medicago truncatula c... 40 0.41
gb|CX518625.1|CX518625 s13dNF34B08VI073_424083 Virus-Infect... 40 0.41
gb|CX521238.1|CX521238 s13dNF69E09VI069_450262 Virus-Infect... 40 0.41
gb|AC129091.19| Medicago truncatula clone mth2-15j7, comple... 40 0.41
gb|AC144721.18| Medicago truncatula clone mth2-11o23, compl... 40 0.41
gb|AC148346.12| Medicago truncatula clone mth2-25m19, compl... 40 0.41
>gb|AW774553.1|AW774553 EST333704 KV3 Medicago truncatula cDNA clone pKV3-22P6, mRNA
sequence
Length = 626
Score = 163 bits (82), Expect = 4e-038
Identities = 279/342 (81%), Gaps = 2/342 (0%)
Strand = Plus / Plus
Query: 347 ggagctgcaaaagg-cttgtcttacttgcatcacgattgttcgcctcgaataatacatcg 405
|||||||||||||| |||| |||||||||| ||||||||||| ||| | || ||||| ||
Sbjct: 95 ggagctgcaaaagggcttg-cttacttgcaccacgattgttcccctaggatcatacaccg 153
Query: 406 tgatatcaagtcgagcaacatcttgcttgacggcagttttgaggcccgcgtatcagactt 465
||| || || ||||||||||| |||||||| || | || || || | || || || ||
Sbjct: 154 tgacattaaatcgagcaacattttgcttgatggaaaattggatgctagagtttctgattt 213
Query: 466 tggacttgcaaagcttttagaggacgaagaatcccatatcactacaatagttgcaggaac 525
||||||||| || ||| | ||||| |||||||| || ||||| || || ||||| |||||
Sbjct: 214 tggacttgccaaacttctggaggatgaagaatctcacatcaccactattgttgccggaac 273
Query: 526 atttggttatcttgcgccagagtatatgcagtttggcagagccaccgagaagaccgatgt 585
|||||||||||| || |||||||||||||| ||| ||||| || ||||||||||||||
Sbjct: 274 atttggttatctagctccagagtatatgcaaagtggaagagcaactgagaagaccgatgt 333
Query: 586 ctacagttttggggttctggtacttgaaatactcagcggaaagcgacctaccgatgcatc 645
|| ||||||||||| || ||||||| | || || |||||||| || || ||||||||
Sbjct: 334 ttatagttttggggtgttgacacttgaagtgcttagtggaaagcggccaacagatgcatc 393
Query: 646 cttcattgagaagggattaaacattgttggatggttaaattt 687
||||||||| ||||| |||| ||||||| ||||| |||||
Sbjct: 394 cttcattgaaaagggtctaaatgttgttggttggttgaattt 435
>gb|BG588347.1|BG588347 EST490156 MHRP- Medicago truncatula cDNA clone pMHRP-47N5, mRNA
sequence
Length = 573
Score = 105 bits (53), Expect = 8e-021
Identities = 162/197 (82%), Gaps = 1/197 (0%)
Strand = Plus / Plus
Query: 491 gaagaatcccatatcactacaatagttgcaggaacatttggttatcttgcgccagagtat 550
|||||||| || ||||| || || ||||| |||||||||||||| || || |||||||||
Sbjct: 1 gaagaatctcacatcaccactattgttgccggaacatttggtta-ctagctccagagtat 59
Query: 551 atgcagtttggcagagccaccgagaagaccgatgtctacagttttggggttctggtactt 610
||||| ||| ||||| || |||||||||||||| || ||||||||||| || ||||
Sbjct: 60 atgcaaagtggaagagcaactgagaagaccgatgtttatagttttggggtgttgacactt 119
Query: 611 gaaatactcagcggaaagcgacctaccgatgcatccttcattgagaagggattaaacatt 670
||| | || || |||||||| || || ||||||||||||||||| ||||| |||| ||
Sbjct: 120 gaagtgcttagtggaaagcggccaacagatgcatccttcattgaaaagggtctaaatgtt 179
Query: 671 gttggatggttaaattt 687
||||| ||||| |||||
Sbjct: 180 gttggttggttgaattt 196
>gb|BE202389.1|BE202389 EST392838 KV1 Medicago truncatula cDNA clone pKV1-2G1, mRNA
sequence
Length = 586
Score = 58.0 bits (29), Expect = 2e-006
Identities = 70/81 (86%), Gaps = 2/81 (2%)
Strand = Plus / Plus
Query: 347 ggagctgcaaaa-ggcttgtcttacttgcatcacgattgttcgcctcgaataatacatcg 405
|||||||||||| |||||| |||||||||| ||||||||||| ||| | || ||||| ||
Sbjct: 470 ggagctgcaaaagggcttg-cttacttgcaccacgattgttcccctaggatcatacaccg 528
Query: 406 tgatatcaagtcgagcaacat 426
||| || || |||||||||||
Sbjct: 529 tgacattaaatcgagcaacat 549
>gb|AC146651.10| Medicago truncatula clone mth2-113d3, complete sequence
Length = 157296
Score = 48.1 bits (24), Expect = 0.002
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 227 tgcaactctccttcatcaaaacttttga 254
|||||||||||||||||| |||||||||
Sbjct: 4968 tgcaactctccttcatcagaacttttga 4995
>gb|CG955856.1|CG955856 MBEDH25TRC mth2 Medicago truncatula genomic clone 31F2, DNA
sequence
Length = 854
Score = 44.1 bits (22), Expect = 0.026
Identities = 39/42 (92%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 347 ggagctgcaaaa-ggcttgtcttacttgcatcacgattgttc 387
|||||||||||| |||||| |||||||||| |||||||||||
Sbjct: 809 ggagctgcaaaagggcttg-cttacttgcaccacgattgttc 849
>gb|CG964762.1|CG964762 MBEAI63TFB mth2 Medicago truncatula genomic clone 13K5, DNA
sequence
Length = 676
Score = 44.1 bits (22), Expect = 0.026
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 362 ttgtcttacttgcatcacgattgttcgcctcgaataatacatcgtgatat 411
||||| ||||||||||| |||||||| |||| || || |||||||||||
Sbjct: 156 ttgtcctacttgcatcatgattgttctcctcctattattcatcgtgatat 205
>gb|AC133779.21| Medicago truncatula clone mth2-27n4, complete sequence
Length = 100702
Score = 44.1 bits (22), Expect = 0.026
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 362 ttgtcttacttgcatcacgattgttcgcctcgaataatacatcgtgatat 411
||||| ||||||||||| ||||| ||||||| ||||| ||||| |||||
Sbjct: 92040 ttgtcctacttgcatcatgattgctcgcctcctataattcatcgcgatat 91991
Score = 44.1 bits (22), Expect = 0.026
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 362 ttgtcttacttgcatcacgattgttcgcctcgaataatacatcgtgatat 411
||||| ||||||||||| |||||||| |||| || || |||||||||||
Sbjct: 10235 ttgtcctacttgcatcatgattgttctcctcctattattcatcgtgatat 10186
>gb|AC151423.2| Medicago truncatula chromosome 7 clone mth2-13k5, *** SEQUENCING IN
PROGRESS ***, 2 unordered pieces
Length = 140101
Score = 44.1 bits (22), Expect = 0.026
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 362 ttgtcttacttgcatcacgattgttcgcctcgaataatacatcgtgatat 411
||||| ||||||||||| |||||||| |||| || || |||||||||||
Sbjct: 189 ttgtcctacttgcatcatgattgttctcctcctattattcatcgtgatat 238
>gb|AC135318.40| Medicago truncatula clone mth2-36o3, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 120801
Score = 44.1 bits (22), Expect = 0.026
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 362 ttgtcttacttgcatcacgattgttcgcctcgaataatacatcgtgatat 411
||||| ||||||||||| ||||| ||||||| ||||| ||||| |||||
Sbjct: 76481 ttgtcctacttgcatcatgattgctcgcctcctataattcatcgcgatat 76432
>gb|CG945874.1|CG945874 MBEIP16TF mth2 Medicago truncatula genomic clone 63D8, DNA sequence
Length = 823
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 458 tcagactttggacttgcaaag 478
|||||||||||||||||||||
Sbjct: 414 tcagactttggacttgcaaag 434
>gb|AC151522.2| Medicago truncatula chromosome 2 BAC clone mte1-61m1, complete sequence
Length = 106105
Score = 42.1 bits (21), Expect = 0.10
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 516 ttgcaggaacatttggttatcttgc 540
|||| ||||||||||||||||||||
Sbjct: 63215 ttgctggaacatttggttatcttgc 63191
>gb|AC121245.17| Medicago truncatula clone mth2-33g3, complete sequence
Length = 125763
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 946 tcctttattctttgcagatat 966
|||||||||||||||||||||
Sbjct: 8223 tcctttattctttgcagatat 8203
>gb|AC157648.18| Medicago truncatula clone mth2-68d9, complete sequence
Length = 84361
Score = 42.1 bits (21), Expect = 0.10
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 116 ctttgaaaagaatagtgaaaacaaa 140
|||||||||||||||||||| ||||
Sbjct: 22130 ctttgaaaagaatagtgaaatcaaa 22154
>gb|CG956669.1|CG956669 MBECW21TF mth2 Medicago truncatula genomic clone 29D17, DNA
sequence
Length = 816
Score = 40.1 bits (20), Expect = 0.41
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 521 ggaacatttggttatcttgcgccagagtatat 552
||||||||||| |||| ||| |||||||||||
Sbjct: 266 ggaacatttggctatcatgctccagagtatat 297
>emb|CR513093.1| mth4-42A7FM2 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 777
Score = 40.1 bits (20), Expect = 0.41
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 455 gtatcagactttggacttgcaaagcttt 482
|||||||||||||| |||||||| ||||
Sbjct: 424 gtatcagactttggtcttgcaaaacttt 451
>gb|AW687233.1|AW687233 NF007D09RT1F1077 Developing root Medicago truncatula cDNA clone
NF007D09RT 5', mRNA sequence
Length = 654
Score = 40.1 bits (20), Expect = 0.41
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 581 gatgtctacagttttggggttctggtacttgaaata 616
||||| ||||||||||| ||||| |||||||||||
Sbjct: 581 gatgtatacagttttggagttcttatacttgaaata 616
>gb|AW687806.2|AW687806 NF013F09RT1F1078 Developing root Medicago truncatula cDNA clone
NF013F09RT 5', mRNA sequence
Length = 519
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 521 ggaacatttggttatcttgc 540
||||||||||||||||||||
Sbjct: 62 ggaacatttggttatcttgc 81
>gb|BG646817.1|BG646817 EST508436 HOGA Medicago truncatula cDNA clone pHOGA-9L10 5' end,
mRNA sequence
Length = 701
Score = 40.1 bits (20), Expect = 0.41
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 455 gtatcagactttggacttgcaaagcttt 482
|||||||||||||| |||||||| ||||
Sbjct: 180 gtatcagactttggtcttgcaaaacttt 207
>gb|CA921581.1|CA921581 EST639299 MTUS Medicago truncatula cDNA clone MTUS-42A10, mRNA
sequence
Length = 765
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 521 ggaacatttggttatcttgc 540
||||||||||||||||||||
Sbjct: 561 ggaacatttggttatcttgc 542
>gb|CB894417.1|CB894417 EST647209 HOGA Medicago truncatula cDNA clone HOGA-31I21, mRNA
sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.41
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 455 gtatcagactttggacttgcaaagcttt 482
|||||||||||||| |||||||| ||||
Sbjct: 77 gtatcagactttggtcttgcaaaacttt 104
>gb|CX518625.1|CX518625 s13dNF34B08VI073_424083 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 542
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 521 ggaacatttggttatcttgc 540
||||||||||||||||||||
Sbjct: 419 ggaacatttggttatcttgc 438
>gb|CX521238.1|CX521238 s13dNF69E09VI069_450262 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 553
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 521 ggaacatttggttatcttgc 540
||||||||||||||||||||
Sbjct: 419 ggaacatttggttatcttgc 438
>gb|AC129091.19| Medicago truncatula clone mth2-15j7, complete sequence
Length = 106540
Score = 40.1 bits (20), Expect = 0.41
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 581 gatgtctacagttttggggttctggtacttgaaata 616
||||| ||||||||||| ||||| |||||||||||
Sbjct: 48565 gatgtatacagttttggagttcttatacttgaaata 48600
>gb|AC144721.18| Medicago truncatula clone mth2-11o23, complete sequence
Length = 135959
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 13 gacatactcaagaagctaga 32
||||||||||||||||||||
Sbjct: 97569 gacatactcaagaagctaga 97550
>gb|AC148346.12| Medicago truncatula clone mth2-25m19, complete sequence
Length = 122590
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 521 ggaacatttggttatcttgc 540
||||||||||||||||||||
Sbjct: 67614 ggaacatttggttatcttgc 67595
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 290,829
Number of Sequences: 392609
Number of extensions: 290829
Number of successful extensions: 20286
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20165
Number of HSP's gapped (non-prelim): 120
length of query: 1164
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1144
effective length of database: 433,880,813
effective search space: 496359650072
effective search space used: 496359650072
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)