BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404863.2.1
(672 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG940943.1|CG940943 MBELN63TF mth2 Medicago truncatula g... 103 2e-020
emb|CR485906.1| mth2-155E9FM2 BAC end, cultivar Jemalong A1... 103 2e-020
gb|AJ621869.1|AJ621869 AJ621869 Medicago truncatula J5 root... 103 2e-020
gb|AW693031.1|AW693031 NF058H11ST1F1000 Developing stem Med... 96 5e-018
gb|AL384546.1|AL384546 MtBC22H06R1 MtBC Medicago truncatula... 96 5e-018
gb|CA922301.1|CA922301 EST640019 MTUS Medicago truncatula c... 96 5e-018
gb|CX529380.1|CX529380 s13dNF90B12MJ093_244814 Methyl Jasmo... 96 5e-018
gb|CG947524.1|CG947524 MBEIW04TR mth2 Medicago truncatula g... 92 7e-017
gb|CG948326.1|CG948326 MBEIJ89TR mth2 Medicago truncatula g... 92 7e-017
gb|CG967052.1|CG967052 MBELD67TR mth2 Medicago truncatula g... 92 7e-017
gb|BM779156.1|BM779156 EST589731 KV2 Medicago truncatula cD... 78 1e-012
gb|BM779448.1|BM779448 EST590024 KV2 Medicago truncatula cD... 74 2e-011
gb|AL381926.1|AL381926 MtBC03H02R1 MtBC Medicago truncatula... 68 1e-009
gb|AL376292.1|AL376292 MtBB22F04R1 MtBB Medicago truncatula... 56 4e-006
gb|AL384491.1|AL384491 MtBC22E01R1 MtBC Medicago truncatula... 56 4e-006
gb|AL376276.1|AL376276 MtBB22E04R1 MtBB Medicago truncatula... 48 0.001
gb|BQ145186.1|BQ145186 NF022B10GS1F1080 Germinating Seed Me... 40 0.23
gb|CX536378.1|CX536378 s13dNF22B10GS080_455930 Germinating ... 40 0.23
gb|CX542265.1|CX542265 s13dNF95D09GS076_467838 Germinating ... 40 0.23
gb|AC147472.17| Medicago truncatula clone mth2-24n18, compl... 40 0.23
>gb|CG940943.1|CG940943 MBELN63TF mth2 Medicago truncatula genomic clone 81K6, DNA sequence
Length = 925
Score = 103 bits (52), Expect = 2e-020
Identities = 187/232 (80%)
Strand = Plus / Plus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||| |||||||||| ||||| || || || || ||||||||||| ||||| ||
Sbjct: 542 aggctttcatgctgcactgtaatgcgaggagttcggattaagaagcatgcttgcatatcc 601
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| |||||| ||||| ||||| ||||||||||| ||||||||||| | |||||||||||
Sbjct: 602 agcagcatcatcggatggcattcaactgttggtcaatgggcacgtgtggagaatatgact 661
Query: 151 atcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctc 210
||||| || || ||||| |||| ||| || || ||||||||||| ||||| ||| |
Sbjct: 662 atccttggagaagatgtccatgtatctgatgaagtttacagcaatggtggtgtggttttg 721
Query: 211 ccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtgag 262
|| || || || ||||| |||||||| |||| || ||||| ||||||||||
Sbjct: 722 ccccacaaggaaatcaaaacaagcattctgaatccggagatagtcatgtgag 773
>emb|CR485906.1| mth2-155E9FM2 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 777
Score = 103 bits (52), Expect = 2e-020
Identities = 187/232 (80%)
Strand = Plus / Plus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||| |||||||||| ||||| || || || || ||||||||||| ||||| ||
Sbjct: 542 aggctttcatgctgcactgtaatgcgaggagttcggattaagaagcatgcttgcatatcc 601
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| |||||| ||||| ||||| ||||||||||| ||||||||||| | |||||||||||
Sbjct: 602 agcagcatcatcggatggcattcaactgttggtcaatgggcacgtgtggagaatatgact 661
Query: 151 atcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctc 210
||||| || || ||||| |||| ||| || || ||||||||||| ||||| ||| |
Sbjct: 662 atccttggagaagatgtccatgtatctgatgaagtttacagcaatggtggtgtggttttg 721
Query: 211 ccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtgag 262
|| || || || ||||| |||||||| |||| || ||||| ||||||||||
Sbjct: 722 ccccacaaggaaatcaaaacaagcattctgaatccggagatagtcatgtgag 773
>gb|AJ621869.1|AJ621869 AJ621869 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs773, mRNA sequence
Length = 424
Score = 103 bits (52), Expect = 2e-020
Identities = 187/232 (80%)
Strand = Plus / Plus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||| |||||||||| ||||| || || || || ||||||||||| ||||| ||
Sbjct: 50 aggctttcatgctgcactgtaatgcgaggagttcggattaagaagcatgcttgcatatcc 109
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| |||||| ||||| ||||| ||||||||||| ||||||||||| | |||||||||||
Sbjct: 110 agcagcatcatcggatggcattcaactgttggtcaatgggcacgtgtggagaatatgact 169
Query: 151 atcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctc 210
||||| || || ||||| |||| ||| || || ||||||||||| ||||| ||| |
Sbjct: 170 atccttggagaagatgtccatgtatctgatgaagtttacagcaatggtggtgtggttttg 229
Query: 211 ccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtgag 262
|| || || || ||||| |||||||| |||| || ||||| ||||||||||
Sbjct: 230 ccccacaaggaaatcaaaacaagcattctgaatccggagatagtcatgtgag 281
>gb|AW693031.1|AW693031 NF058H11ST1F1000 Developing stem Medicago truncatula cDNA clone
NF058H11ST 5', mRNA sequence
Length = 657
Score = 95.6 bits (48), Expect = 5e-018
Identities = 186/232 (80%)
Strand = Plus / Minus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||| |||||||| || ||||| || || || |||||||| ||||| ||||| ||
Sbjct: 630 aggctttcgcgctgcacagtaatgcgaggagtccggatcaagaaacatgcttgcatttcc 571
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| ||| ||||| |||||||| || ||||| || |||||||| || | |||||||||||
Sbjct: 570 agcagtattattgggtggcattccactgtcgggcaatgggctcgagtggagaatatgact 511
Query: 151 atcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctc 210
||||| || || |||||||||| |||| ||| | ||||||||||| ||||| ||| |
Sbjct: 510 atccttggagaagatgttcatgtttgtgatgagatttacagcaatggtggtgtggtttta 451
Query: 211 ccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtgag 262
|| || || ||||| ||| ||| ||| ||||||| ||||| ||||||||||
Sbjct: 450 ccccacaaggagattaagacaaatattctgaagccagagattgtcatgtgag 399
>gb|AL384546.1|AL384546 MtBC22H06R1 MtBC Medicago truncatula cDNA clone MtBC22H06 T7, mRNA
sequence
Length = 550
Score = 95.6 bits (48), Expect = 5e-018
Identities = 186/232 (80%)
Strand = Plus / Plus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||| |||||||| || ||||| || || || |||||||| ||||| ||||| ||
Sbjct: 10 aggctttcgcgctgcacagtaatgcgaggagtccggatcaagaaacatgcttgcatttcc 69
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| ||| ||||| |||||||| || ||||| || |||||||| || | |||||||||||
Sbjct: 70 agcagtattattgggtggcattccactgtcgggcaatgggctcgagtggagaatatgact 129
Query: 151 atcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctc 210
||||| || || |||||||||| |||| ||| | ||||||||||| ||||| ||| |
Sbjct: 130 atccttggagaagatgttcatgtttgtgatgagatttacagcaatggtggtgtggtttta 189
Query: 211 ccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtgag 262
|| || || ||||| ||| ||| ||| ||||||| ||||| ||||||||||
Sbjct: 190 ccccacaaggagattaagacaaatattctgaagccagagattgtcatgtgag 241
>gb|CA922301.1|CA922301 EST640019 MTUS Medicago truncatula cDNA clone MTUS-52A7, mRNA
sequence
Length = 824
Score = 95.6 bits (48), Expect = 5e-018
Identities = 186/232 (80%)
Strand = Plus / Minus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||| |||||||| || ||||| || || || |||||||| ||||| ||||| ||
Sbjct: 572 aggctttcgcgctgcacagtaatgcgaggagtccggatcaagaaacatgcttgcatttcc 513
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| ||| ||||| |||||||| || ||||| || |||||||| || | |||||||||||
Sbjct: 512 agcagtattattgggtggcattccactgtcgggcaatgggctcgagtggagaatatgact 453
Query: 151 atcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctc 210
||||| || || |||||||||| |||| ||| | ||||||||||| ||||| ||| |
Sbjct: 452 atccttggagaagatgttcatgtttgtgatgagatttacagcaatggtggtgtggtttta 393
Query: 211 ccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtgag 262
|| || || ||||| ||| ||| ||| ||||||| ||||| ||||||||||
Sbjct: 392 ccccacaaggagattaagacaaatattctgaagccagagattgtcatgtgag 341
>gb|CX529380.1|CX529380 s13dNF90B12MJ093_244814 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 629
Score = 95.6 bits (48), Expect = 5e-018
Identities = 186/232 (80%)
Strand = Plus / Minus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||| |||||||| || ||||| || || || |||||||| ||||| ||||| ||
Sbjct: 588 aggctttcgcgctgcacagtaatgcgaggagtccggatcaagaaacatgcttgcatttcc 529
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| ||| ||||| |||||||| || ||||| || |||||||| || | |||||||||||
Sbjct: 528 agcagtattattgggtggcattccactgtcgggcaatgggctcgagtggagaatatgact 469
Query: 151 atcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctc 210
||||| || || |||||||||| |||| ||| | ||||||||||| ||||| ||| |
Sbjct: 468 atccttggagaagatgttcatgtttgtgatgagatttacagcaatggtggtgtggtttta 409
Query: 211 ccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatgtgag 262
|| || || ||||| ||| ||| ||| ||||||| ||||| ||||||||||
Sbjct: 408 ccccacaaggagattaagacaaatattctgaagccagagattgtcatgtgag 357
>gb|CG947524.1|CG947524 MBEIW04TR mth2 Medicago truncatula genomic clone 65B7, DNA sequence
Length = 899
Score = 91.7 bits (46), Expect = 7e-017
Identities = 118/142 (83%)
Strand = Plus / Plus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||| |||||||||| ||||| || || || || ||||||||||| ||||| ||
Sbjct: 722 aggctttcatgctgcactgtaatgcgaggagttcggattaagaagcatgcttgcatatcc 781
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| |||||| ||||| ||||| ||||||||||| ||||||||||| | |||||||||||
Sbjct: 782 agcagcatcatcggatggcattcaactgttggtcaatgggcacgtgtggagaatatgact 841
Query: 151 atcctgggcgaggatgttcatg 172
||||| || || ||||| ||||
Sbjct: 842 atccttggagaagatgtccatg 863
>gb|CG948326.1|CG948326 MBEIJ89TR mth2 Medicago truncatula genomic clone 62O10, DNA
sequence
Length = 929
Score = 91.7 bits (46), Expect = 7e-017
Identities = 118/142 (83%)
Strand = Plus / Plus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||| |||||||||| ||||| || || || || ||||||||||| ||||| ||
Sbjct: 722 aggctttcatgctgcactgtaatgcgaggagttcggattaagaagcatgcttgcatatcc 781
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| |||||| ||||| ||||| ||||||||||| ||||||||||| | |||||||||||
Sbjct: 782 agcagcatcatcggatggcattcaactgttggtcaatgggcacgtgtggagaatatgact 841
Query: 151 atcctgggcgaggatgttcatg 172
||||| || || ||||| ||||
Sbjct: 842 atccttggagaagatgtccatg 863
>gb|CG967052.1|CG967052 MBELD67TR mth2 Medicago truncatula genomic clone 78L14, DNA
sequence
Length = 947
Score = 91.7 bits (46), Expect = 7e-017
Identities = 118/142 (83%)
Strand = Plus / Plus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||| |||||||||| ||||| || || || || ||||||||||| ||||| ||
Sbjct: 722 aggctttcatgctgcactgtaatgcgaggagttcggattaagaagcatgcttgcatatcc 781
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| |||||| ||||| ||||| ||||||||||| ||||||||||| | |||||||||||
Sbjct: 782 agcagcatcatcggatggcattcaactgttggtcaatgggcacgtgtggagaatatgact 841
Query: 151 atcctgggcgaggatgttcatg 172
||||| || || ||||| ||||
Sbjct: 842 atccttggagaagatgtccatg 863
>gb|BM779156.1|BM779156 EST589731 KV2 Medicago truncatula cDNA clone pKV2-51K19, mRNA
sequence
Length = 618
Score = 77.8 bits (39), Expect = 1e-012
Identities = 135/167 (80%)
Strand = Plus / Plus
Query: 31 aggctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcg 90
|||||||| |||||||| || ||||| || || || |||||||| ||||| ||||| ||
Sbjct: 452 aggctttcgcgctgcacagtaatgcgaggagtccggatcaagaaacatgcttgcatttcc 511
Query: 91 aacagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgacc 150
| ||| ||||| |||||||| || ||||| || |||||||| || | |||||||||||
Sbjct: 512 agcagtattattgggtggcattccactgtcgggcaatgggctcgagtggagaatatgact 571
Query: 151 atcctgggcgaggatgttcatgggggtgacgaggtatacagcaatgg 197
||||| || || |||||||||| |||| ||| | |||||||||||
Sbjct: 572 atccttggagaagatgttcatgtttgtgatgagatttacagcaatgg 618
>gb|BM779448.1|BM779448 EST590024 KV2 Medicago truncatula cDNA clone pKV2-52A17, mRNA
sequence
Length = 623
Score = 73.8 bits (37), Expect = 2e-011
Identities = 133/165 (80%)
Strand = Plus / Plus
Query: 33 gctttcccgctgcactgtcatgcgtggtgtgcgtatcaagaagcatgcctgcatctcgaa 92
|||||| |||||||| || ||||| || || || |||||||| ||||| ||||| || |
Sbjct: 459 gctttcgcgctgcacagtaatgcgaggagtccggatcaagaaacatgcttgcatttccag 518
Query: 93 cagcattatcgggtggcactcaactgttggacaatgggcacggatagagaatatgaccat 152
||| ||||| |||||||| || ||||| || |||||||| || | ||||||||||| ||
Sbjct: 519 cagtattattgggtggcattccactgtcgggcaatgggctcgagtggagaatatgactat 578
Query: 153 cctgggcgaggatgttcatgggggtgacgaggtatacagcaatgg 197
||| || || |||||||||| |||| ||| | |||||||||||
Sbjct: 579 ccttggagaagatgttcatgtttgtgatgagatttacagcaatgg 623
>gb|AL381926.1|AL381926 MtBC03H02R1 MtBC Medicago truncatula cDNA clone MtBC03H02 T7, mRNA
sequence
Length = 465
Score = 67.9 bits (34), Expect = 1e-009
Identities = 133/166 (80%)
Strand = Plus / Plus
Query: 97 attatcgggtggcactcaactgttggacaatgggcacggatagagaatatgaccatcctg 156
||||| |||||||| || ||||| || |||||||| || | ||||||||||| |||||
Sbjct: 2 attattgggtggcattccactgtcgggcaatgggctcgagtggagaatatgactatcctt 61
Query: 157 ggcgaggatgttcatgggggtgacgaggtatacagcaatggcggtgttgttctcccacag 216
|| || |||||||||| |||| ||| | ||||||||||| ||||| ||| | || ||
Sbjct: 62 ggagaagatgttcatgtttgtgatgagatttacagcaatggtggtgtggttttaccccac 121
Query: 217 aaagagatcaagtcaagcattttgaagcctgagatcgtcatgtgag 262
|| ||||| ||| ||| ||| ||||||| ||||| ||||||||||
Sbjct: 122 aaggagattaagacaaatattctgaagccagagattgtcatgtgag 167
>gb|AL376292.1|AL376292 MtBB22F04R1 MtBB Medicago truncatula cDNA clone MtBB22F04 T7, mRNA
sequence
Length = 520
Score = 56.0 bits (28), Expect = 4e-006
Identities = 100/124 (80%)
Strand = Plus / Plus
Query: 139 gagaatatgaccatcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggc 198
||||||||||| ||||| || || |||||||||| |||| ||| | |||||||||||
Sbjct: 18 gagaatatgactatccttggagaagatgttcatgtttgtgatgagatttacagcaatggt 77
Query: 199 ggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatg 258
||||| ||| | || || || ||||| ||| ||| ||| ||||||| ||||| ||||||
Sbjct: 78 ggtgtggttttaccccacaaggagattaagacaaatattctgaagccagagattgtcatg 137
Query: 259 tgag 262
||||
Sbjct: 138 tgag 141
>gb|AL384491.1|AL384491 MtBC22E01R1 MtBC Medicago truncatula cDNA clone MtBC22E01 T7, mRNA
sequence
Length = 498
Score = 56.0 bits (28), Expect = 4e-006
Identities = 100/124 (80%)
Strand = Plus / Plus
Query: 139 gagaatatgaccatcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggc 198
||||||||||| ||||| || || |||||||||| |||| ||| | |||||||||||
Sbjct: 22 gagaatatgactatccttggagaagatgttcatgtttgtgatgagatttacagcaatggt 81
Query: 199 ggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatg 258
||||| ||| | || || || ||||| ||| ||| ||| ||||||| ||||| ||||||
Sbjct: 82 ggtgtggttttaccccacaaggagattaagacaaatattctgaagccagagattgtcatg 141
Query: 259 tgag 262
||||
Sbjct: 142 tgag 145
>gb|AL376276.1|AL376276 MtBB22E04R1 MtBB Medicago truncatula cDNA clone MtBB22E04 T7, mRNA
sequence
Length = 521
Score = 48.1 bits (24), Expect = 0.001
Identities = 99/124 (79%)
Strand = Plus / Plus
Query: 139 gagaatatgaccatcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggc 198
||||||||||| ||||| || || |||||||||| |||| ||| | |||||||||||
Sbjct: 19 gagaatatgactatccttggagaagatgttcatgtttgtgatgagatttacagcaatggt 78
Query: 199 ggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatg 258
||||| ||| | || | || ||||| ||| ||| ||| ||||||| ||||| ||||||
Sbjct: 79 ggtgtggttttaccccccaaggagattaagacaaatattctgaagccagagattgtcatg 138
Query: 259 tgag 262
||||
Sbjct: 139 tgag 142
>gb|BQ145186.1|BQ145186 NF022B10GS1F1080 Germinating Seed Medicago truncatula cDNA clone
NF022B10GS 5', mRNA sequence
Length = 816
Score = 40.1 bits (20), Expect = 0.23
Identities = 98/124 (79%)
Strand = Plus / Plus
Query: 139 gagaatatgaccatcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggc 198
||||||||||| ||||| || || ||||| |||| ||| || || |||||||||||
Sbjct: 119 gagaatatgactatccttggagaagatgtccatgtatctgatgaagtttacagcaatggt 178
Query: 199 ggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatg 258
||||| ||| | || || || || ||||| |||||||| |||| || ||||| ||||||
Sbjct: 179 ggtgtggttttgccccacaaggaaatcaaaacaagcattctgaatccggagatagtcatg 238
Query: 259 tgag 262
||||
Sbjct: 239 tgag 242
>gb|CX536378.1|CX536378 s13dNF22B10GS080_455930 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 178
Score = 40.1 bits (20), Expect = 0.23
Identities = 98/124 (79%)
Strand = Plus / Plus
Query: 139 gagaatatgaccatcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggc 198
||||||||||| ||||| || || ||||| |||| ||| || || |||||||||||
Sbjct: 3 gagaatatgactatccttggagaagatgtccatgtatctgatgaagtttacagcaatggt 62
Query: 199 ggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatg 258
||||| ||| | || || || || ||||| |||||||| |||| || ||||| ||||||
Sbjct: 63 ggtgtggttttgccccacaaggaaatcaaaacaagcattctgaatccggagatagtcatg 122
Query: 259 tgag 262
||||
Sbjct: 123 tgag 126
>gb|CX542265.1|CX542265 s13dNF95D09GS076_467838 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 178
Score = 40.1 bits (20), Expect = 0.23
Identities = 98/124 (79%)
Strand = Plus / Plus
Query: 139 gagaatatgaccatcctgggcgaggatgttcatgggggtgacgaggtatacagcaatggc 198
||||||||||| ||||| || || ||||| |||| ||| || || |||||||||||
Sbjct: 3 gagaatatgactatccttggagaagatgtccatgtatctgatgaagtttacagcaatggt 62
Query: 199 ggtgttgttctcccacagaaagagatcaagtcaagcattttgaagcctgagatcgtcatg 258
||||| ||| | || || || || ||||| |||||||| |||| || ||||| ||||||
Sbjct: 63 ggtgtggttttgccccacaaggaaatcaaaacaagcattctgaatccggagatagtcatg 122
Query: 259 tgag 262
||||
Sbjct: 123 tgag 126
>gb|AC147472.17| Medicago truncatula clone mth2-24n18, complete sequence
Length = 133272
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 540 agtttatttttaaatgttgt 559
||||||||||||||||||||
Sbjct: 109617 agtttatttttaaatgttgt 109598
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 192,416
Number of Sequences: 392609
Number of extensions: 192416
Number of successful extensions: 15049
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15018
Number of HSP's gapped (non-prelim): 28
length of query: 672
length of database: 441,732,993
effective HSP length: 19
effective length of query: 653
effective length of database: 434,273,422
effective search space: 283580544566
effective search space used: 283580544566
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)