BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404820.2.1
(830 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL381589.1|AL381589 MtBC01H02F3 MtBC Medicago truncatula... 78 1e-012
gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone m... 64 2e-008
gb|AC122723.6| Medicago truncatula clone mth2-5i15, complet... 64 2e-008
gb|AL381590.1|AL381590 MtBC01H02R2 MtBC Medicago truncatula... 54 2e-005
gb|BI310709.1|BI310709 EST5312459 GESD Medicago truncatula ... 54 2e-005
gb|AC137603.16| Medicago truncatula clone mth2-14b10, compl... 54 2e-005
emb|CR500324.1| mth2-177H7FM1 BAC end, cultivar Jemalong A1... 50 3e-004
emb|CR320381.1| mte1-46O24FM1 BAC end, cultivar Jemalong A1... 50 3e-004
gb|BQ123088.1|BQ123088 EST608664 GLSD Medicago truncatula c... 50 3e-004
gb|BF521212.1|BF521212 EST458760 DSIL Medicago truncatula c... 42 0.073
gb|BG449853.1|BG449853 NF053H03IN1F1029 Insect herbivory Me... 42 0.073
>gb|AL381589.1|AL381589 MtBC01H02F3 MtBC Medicago truncatula cDNA clone MtBC01H02 T3, mRNA
sequence
Length = 502
Score = 77.8 bits (39), Expect = 1e-012
Identities = 81/95 (85%)
Strand = Plus / Minus
Query: 462 ataaacgttatgaatatcagccccttgatcagccggaacacaagctggaactctgcactg 521
||||| |||| |||||||| ||||||||| | ||||| |||||||| || | |||||||
Sbjct: 246 ataaaagttacgaatatcatccccttgattaatcggaagacaagctgaaaatttgcactg 187
Query: 522 aatttcctcctgccaactgatacagtcttcatcac 556
||||| | ||| ||||| |||||||||||||||||
Sbjct: 186 aatttacgcctcccaacagatacagtcttcatcac 152
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaa 408
||||| |||||||||||||| ||||| ||||||||||
Sbjct: 336 ccccaaccagttggcatgaaggcaagaatgcaaacaa 300
>gb|AC152184.1| Medicago truncatula chromosome 7 BAC clone mte1-61c3, complete
sequence
Length = 103090
Score = 63.9 bits (32), Expect = 2e-008
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 462 ataaacgttatgaatatcagccccttgatcagccggaacacaagctggaactctgcactg 521
||||| |||| |||||||| ||||||||| | ||||| |||||||| || | |||||||
Sbjct: 9264 ataaaagttacgaatatcatccccttgattaatcggaagacaagctgaaaatttgcactg 9205
Query: 522 aatttcctcctgccaactgatacagtct 549
||||| | ||| ||||| ||||||||||
Sbjct: 9204 aatttacgcctcccaacagatacagtct 9177
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcat 205
||||||||||| |||| |||||| ||||| || ||||||||||||||
Sbjct: 10142 atacgagaaatttgcaaacctctgctgaacgcttggttgaacagcat 10096
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaa 408
||||| |||||||||||||| ||||| ||||||||||
Sbjct: 9354 ccccaaccagttggcatgaaggcaagaatgcaaacaa 9318
>gb|AC122723.6| Medicago truncatula clone mth2-5i15, complete sequence
Length = 105353
Score = 63.9 bits (32), Expect = 2e-008
Identities = 74/88 (84%)
Strand = Plus / Minus
Query: 462 ataaacgttatgaatatcagccccttgatcagccggaacacaagctggaactctgcactg 521
||||| |||| |||||||| ||||||||| | ||||| |||||||| || | |||||||
Sbjct: 80661 ataaaagttacgaatatcatccccttgattaatcggaagacaagctgaaaatttgcactg 80602
Query: 522 aatttcctcctgccaactgatacagtct 549
||||| | ||| ||||| ||||||||||
Sbjct: 80601 aatttacgcctcccaacagatacagtct 80574
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcat 205
||||||||||| |||| |||||| ||||| || ||||||||||||||
Sbjct: 81539 atacgagaaatttgcaaacctctgctgaacgcttggttgaacagcat 81493
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaa 408
||||| |||||||||||||| ||||| ||||||||||
Sbjct: 80751 ccccaaccagttggcatgaaggcaagaatgcaaacaa 80715
>gb|AL381590.1|AL381590 MtBC01H02R2 MtBC Medicago truncatula cDNA clone MtBC01H02 T7, mRNA
sequence
Length = 548
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcat 205
||||||||||| |||| |||||| ||||| || ||||||||||||||
Sbjct: 351 atacgagaaatttgcaaacctctgctgaacgcttggttgaacagcat 305
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaa 408
||||| |||||||||||||| ||||| ||||||||||
Sbjct: 138 ccccaaccagttggcatgaaggcaagaatgcaaacaa 102
>gb|BI310709.1|BI310709 EST5312459 GESD Medicago truncatula cDNA clone pGESD8H8 5' end,
mRNA sequence
Length = 591
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctg 418
||||| |||||||||||||| ||||| |||||||||| ||||||||
Sbjct: 442 ccccaaccagttggcatgaaggcaagaatgcaaacaacaatgtcctg 396
>gb|AC137603.16| Medicago truncatula clone mth2-14b10, complete sequence
Length = 109793
Score = 54.0 bits (27), Expect = 2e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 372 ccccatccagttggcatgaacgcaaggatgcaaacaaagatgtcctg 418
||||| |||||||||||||| ||||| |||||||||| ||||||||
Sbjct: 60462 ccccaaccagttggcatgaaggcaagaatgcaaacaacaatgtcctg 60508
>emb|CR500324.1| mth2-177H7FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 638
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| || | |||||||||||| || |||||||| ||||| |||| || |||||
Sbjct: 412 cgagaaatttgtaaacctctactgaaagcttggttgaaaagcattcttgtttgaaactct 471
Query: 222 gaaacaaacgggaacca 238
|||||||| || |||||
Sbjct: 472 gaaacaaatggaaacca 488
>emb|CR320381.1| mte1-46O24FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 888
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| || | |||||||||||| || |||||||| ||||| |||| || |||||
Sbjct: 557 cgagaaatttgtaaacctctactgaaagcttggttgaaaagcattcttgtttgaaactct 616
Query: 222 gaaacaaacgggaacca 238
|||||||| || |||||
Sbjct: 617 gaaacaaatggaaacca 633
>gb|BQ123088.1|BQ123088 EST608664 GLSD Medicago truncatula cDNA clone pGLSD-31G15, mRNA
sequence
Length = 673
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 162 cgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaactcc 221
|||||||| || | |||||||||||| || |||||||| ||||| |||| || |||||
Sbjct: 498 cgagaaatttgtaaacctctactgaaagcttggttgaaaagcattcttgtttgaaactct 439
Query: 222 gaaacaaacgggaacca 238
|||||||| || |||||
Sbjct: 438 gaaacaaatggaaacca 422
>gb|BF521212.1|BF521212 EST458760 DSIL Medicago truncatula cDNA clone pDSIL-41P20, mRNA
sequence
Length = 342
Score = 42.1 bits (21), Expect = 0.073
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 696 ccacgctttccagaatgcctaagannctcctgctctttttcccacca 742
|||||| |||| |||||| |||| ||| |||||||||||||||||
Sbjct: 311 ccacgcattccggaatgctcaagatgctcatgctctttttcccacca 265
>gb|BG449853.1|BG449853 NF053H03IN1F1029 Insect herbivory Medicago truncatula cDNA clone
NF053H03IN 5', mRNA sequence
Length = 646
Score = 42.1 bits (21), Expect = 0.073
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 696 ccacgctttccagaatgcctaagannctcctgctctttttcccacca 742
|||||| |||| |||||| |||| ||| |||||||||||||||||
Sbjct: 409 ccacgcattccggaatgctcaagatgctcatgctctttttcccacca 363
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 156,289
Number of Sequences: 392609
Number of extensions: 156289
Number of successful extensions: 11002
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10964
Number of HSP's gapped (non-prelim): 38
length of query: 830
length of database: 441,732,993
effective HSP length: 20
effective length of query: 810
effective length of database: 433,880,813
effective search space: 351443458530
effective search space used: 351443458530
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)