BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192420.2.1
(738 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW775402.1|AW775402 EST334467 DSIL Medicago truncatula c... 50 3e-004
gb|AL371281.1|AL371281 MtBA43A08R1 MtBA Medicago truncatula... 50 3e-004
gb|AW696218.2|AW696218 NF103H03ST1F1031 Developing stem Med... 50 3e-004
gb|BI265754.1|BI265754 NF093F09IN1F1079 Insect herbivory Me... 50 3e-004
gb|CA922580.1|CA922580 EST640298 MTUS Medicago truncatula c... 50 3e-004
gb|CB893142.1|CB893142 EST645934 HOGA Medicago truncatula c... 50 3e-004
>gb|AW775402.1|AW775402 EST334467 DSIL Medicago truncatula cDNA clone pDSIL-1N9, mRNA
sequence
Length = 635
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 82 aagcgtatttatattccacttccagattt 110
|||||||||||||||||||| ||||||||
Sbjct: 532 aagcgtatttatattccactaccagattt 560
>gb|AL371281.1|AL371281 MtBA43A08R1 MtBA Medicago truncatula cDNA clone MtBA43A08 T7, mRNA
sequence
Length = 550
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 82 aagcgtatttatattccacttccagattt 110
|||||||||||||||||||| ||||||||
Sbjct: 161 aagcgtatttatattccactaccagattt 133
>gb|AW696218.2|AW696218 NF103H03ST1F1031 Developing stem Medicago truncatula cDNA clone
NF103H03ST 5', mRNA sequence
Length = 577
Score = 50.1 bits (25), Expect = 3e-004
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 26 tggctgctacaaattttccatgggatattgatgaggcactgaggcgaaggctggagaagc 85
|||| ||||| || || |||||||| || ||||||||||| ||| |||||||||| |||
Sbjct: 496 tggcagctactaacttcccatgggacatagatgaggcactaaggagaaggctggaaaaga 555
Query: 86 gtatttatattcc 98
| || ||||||||
Sbjct: 556 gaatatatattcc 568
>gb|BI265754.1|BI265754 NF093F09IN1F1079 Insect herbivory Medicago truncatula cDNA clone
NF093F09IN 5', mRNA sequence
Length = 622
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 82 aagcgtatttatattccacttccagattt 110
|||||||||||||||||||| ||||||||
Sbjct: 540 aagcgtatttatattccactaccagattt 568
>gb|CA922580.1|CA922580 EST640298 MTUS Medicago truncatula cDNA clone MTUS-55F1, mRNA
sequence
Length = 771
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 82 aagcgtatttatattccacttccagattt 110
|||||||||||||||||||| ||||||||
Sbjct: 589 aagcgtatttatattccactaccagattt 561
>gb|CB893142.1|CB893142 EST645934 HOGA Medicago truncatula cDNA clone HOGA-26N16, mRNA
sequence
Length = 611
Score = 50.1 bits (25), Expect = 3e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 82 aagcgtatttatattccacttccagattt 110
|||||||||||||||||||| ||||||||
Sbjct: 500 aagcgtatttatattccactaccagattt 528
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 160,950
Number of Sequences: 392609
Number of extensions: 160950
Number of successful extensions: 12486
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12480
Number of HSP's gapped (non-prelim): 6
length of query: 738
length of database: 441,732,993
effective HSP length: 19
effective length of query: 719
effective length of database: 434,273,422
effective search space: 312242590418
effective search space used: 312242590418
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)