BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161285.2.2
(798 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW773989.1|AW773989 EST332975 KV3 Medicago truncatula cD... 62 8e-008
gb|BE942555.1|BE942555 EST422134 MGHG Medicago truncatula c... 62 8e-008
gb|BE942556.1|BE942556 EST422135 MGHG Medicago truncatula c... 62 8e-008
gb|BE998628.1|BE998628 EST430351 GVSN Medicago truncatula c... 62 8e-008
gb|BQ138850.1|BQ138850 NF008B12PH1F1094 Phoma-infected Medi... 62 8e-008
gb|BQ155462.1|BQ155462 NF080G03IR1F1024 Irradiated Medicago... 62 8e-008
gb|CX521404.1|CX521404 s13dNF75F04VI032_450594 Virus-Infect... 62 8e-008
gb|AC141107.5| Medicago truncatula clone mth2-34a12, comple... 62 8e-008
gb|CA919533.1|CA919533 EST637251 MTUS Medicago truncatula c... 50 3e-004
emb|CR966622.1| mth4-4E19FM1 BAC end, cultivar Jemalong A17... 42 0.071
gb|BF636191.1|BF636191 NF069C11DT1F1085 Drought Medicago tr... 42 0.071
gb|CA918795.1|CA918795 EST636513 MTUS Medicago truncatula c... 42 0.071
gb|AC158372.1| Medicago truncatula chromosome unknown clone... 42 0.071
gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone m... 40 0.28
>gb|AW773989.1|AW773989 EST332975 KV3 Medicago truncatula cDNA clone pKV3-16D2, mRNA
sequence
Length = 616
Score = 61.9 bits (31), Expect = 8e-008
Identities = 57/66 (86%)
Strand = Plus / Minus
Query: 30 gtggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactg 89
|||||||||||| || ||||| |||||||| | || | |||||| ||||||||||||||
Sbjct: 550 gtggaacccggatgcaattgtattcaactcttttcagctctatggaactcctagctactg 491
Query: 90 gatgca 95
||||||
Sbjct: 490 gatgca 485
>gb|BE942555.1|BE942555 EST422134 MGHG Medicago truncatula cDNA clone pMGHG-8J4, mRNA
sequence
Length = 514
Score = 61.9 bits (31), Expect = 8e-008
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 30 gtggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactg 89
|||||||||||| || ||||| |||||||| | || | |||||| ||||||||||||||
Sbjct: 337 gtggaacccggatgcaattgtattcaactcttttcagctctatggaactcctagctactg 396
Query: 90 gatgca 95
||||||
Sbjct: 397 gatgca 402
>gb|BE942556.1|BE942556 EST422135 MGHG Medicago truncatula cDNA clone pMGHG-8J4, mRNA
sequence
Length = 624
Score = 61.9 bits (31), Expect = 8e-008
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 30 gtggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactg 89
|||||||||||| || ||||| |||||||| | || | |||||| ||||||||||||||
Sbjct: 349 gtggaacccggatgcaattgtattcaactcttttcagctctatggaactcctagctactg 408
Query: 90 gatgca 95
||||||
Sbjct: 409 gatgca 414
>gb|BE998628.1|BE998628 EST430351 GVSN Medicago truncatula cDNA clone pGVSN-12F5, mRNA
sequence
Length = 580
Score = 61.9 bits (31), Expect = 8e-008
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 30 gtggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactg 89
|||||||||||| || ||||| |||||||| | || | |||||| ||||||||||||||
Sbjct: 351 gtggaacccggatgcaattgtattcaactcttttcagctctatggaactcctagctactg 410
Query: 90 gatgca 95
||||||
Sbjct: 411 gatgca 416
>gb|BQ138850.1|BQ138850 NF008B12PH1F1094 Phoma-infected Medicago truncatula cDNA clone
NF008B12PH 5', mRNA sequence
Length = 670
Score = 61.9 bits (31), Expect = 8e-008
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 30 gtggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactg 89
|||||||||||| || ||||| |||||||| | || | |||||| ||||||||||||||
Sbjct: 437 gtggaacccggatgcaattgtattcaactcttttcagctctatggaactcctagctactg 496
Query: 90 gatgca 95
||||||
Sbjct: 497 gatgca 502
>gb|BQ155462.1|BQ155462 NF080G03IR1F1024 Irradiated Medicago truncatula cDNA clone
NF080G03IR 5', mRNA sequence
Length = 653
Score = 61.9 bits (31), Expect = 8e-008
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 30 gtggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactg 89
|||||||||||| || ||||| |||||||| | || | |||||| ||||||||||||||
Sbjct: 1 gtggaacccggatgcaattgtattcaactcttttcagctctatggaactcctagctactg 60
Query: 90 gatgca 95
||||||
Sbjct: 61 gatgca 66
>gb|CX521404.1|CX521404 s13dNF75F04VI032_450594 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 455
Score = 61.9 bits (31), Expect = 8e-008
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 30 gtggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactg 89
|||||||||||| || ||||| |||||||| | || | |||||| ||||||||||||||
Sbjct: 170 gtggaacccggatgcaattgtattcaactcttttcagctctatggaactcctagctactg 229
Query: 90 gatgca 95
||||||
Sbjct: 230 gatgca 235
>gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete sequence
Length = 142659
Score = 61.9 bits (31), Expect = 8e-008
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 30 gtggaacccggacgctattgtcttcaactcctggcaacactatggnactcctagctactg 89
|||||||||||| || ||||| |||||||| | || | |||||| ||||||||||||||
Sbjct: 58690 gtggaacccggatgcaattgtattcaactcttttcagctctatggaactcctagctactg 58749
Query: 90 gatgca 95
||||||
Sbjct: 58750 gatgca 58755
>gb|CA919533.1|CA919533 EST637251 MTUS Medicago truncatula cDNA clone MTUS-14H2, mRNA
sequence
Length = 668
Score = 50.1 bits (25), Expect = 3e-004
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 36 cccggacgctattgtcttcaactcctggcaacactatggnactcctagctactggatgca 95
|||||| || ||||| |||||||| | || | |||||| ||||||||||||||||||||
Sbjct: 596 cccggatgcaattgtattcaactcttttcagctctatggaactcctagctactggatgca 537
>emb|CR966622.1| mth4-4E19FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 644 atgaaataaaaaccacatcaggttt 668
|||||||||||||||||||| ||||
Sbjct: 409 atgaaataaaaaccacatcatgttt 433
>gb|BF636191.1|BF636191 NF069C11DT1F1085 Drought Medicago truncatula cDNA clone NF069C11DT
5', mRNA sequence
Length = 469
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 644 atgaaataaaaaccacatcaggttt 668
|||||||||||||||||||| ||||
Sbjct: 389 atgaaataaaaaccacatcatgttt 365
>gb|CA918795.1|CA918795 EST636513 MTUS Medicago truncatula cDNA clone MTUS-3C9, mRNA
sequence
Length = 690
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 644 atgaaataaaaaccacatcaggttt 668
|||||||||||||||||||| ||||
Sbjct: 82 atgaaataaaaaccacatcatgttt 106
>gb|AC158372.1| Medicago truncatula chromosome unknown clone mte1-28e19, *** SEQUENCING
IN PROGRESS ***, 8 ordered pieces
Length = 165155
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 644 atgaaataaaaaccacatcaggttt 668
|||||||||||||||||||| ||||
Sbjct: 128275 atgaaataaaaaccacatcatgttt 128299
>gb|AC158497.2| Medicago truncatula chromosome 2 BAC clone mth2-48e18, complete
sequence
Length = 146321
Score = 40.1 bits (20), Expect = 0.28
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 756 gatggtgagaacgacagcctcctgtggattaaacaaattg 795
|||| |||||||| |||| |||||||| |||||||||||
Sbjct: 89195 gatgatgagaacgcaagccacctgtggagtaaacaaattg 89156
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,214
Number of Sequences: 392609
Number of extensions: 136214
Number of successful extensions: 8797
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8773
Number of HSP's gapped (non-prelim): 24
length of query: 798
length of database: 441,732,993
effective HSP length: 20
effective length of query: 778
effective length of database: 433,880,813
effective search space: 337559272514
effective search space used: 337559272514
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)