BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161285.2.1
(780 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE942555.1|BE942555 EST422134 MGHG Medicago truncatula c... 92 8e-017
gb|BE942556.1|BE942556 EST422135 MGHG Medicago truncatula c... 92 8e-017
gb|BE998628.1|BE998628 EST430351 GVSN Medicago truncatula c... 92 8e-017
gb|BQ138850.1|BQ138850 NF008B12PH1F1094 Phoma-infected Medi... 92 8e-017
gb|CX521404.1|CX521404 s13dNF75F04VI032_450594 Virus-Infect... 92 8e-017
gb|AW773989.1|AW773989 EST332975 KV3 Medicago truncatula cD... 78 1e-012
gb|CA919533.1|CA919533 EST637251 MTUS Medicago truncatula c... 70 3e-010
gb|BQ155462.1|BQ155462 NF080G03IR1F1024 Irradiated Medicago... 68 1e-009
gb|AC141107.5| Medicago truncatula clone mth2-34a12, comple... 68 1e-009
gb|AW774464.1|AW774464 EST333615 KV3 Medicago truncatula cD... 54 2e-005
emb|CR966622.1| mth4-4E19FM1 BAC end, cultivar Jemalong A17... 42 0.069
gb|BF636191.1|BF636191 NF069C11DT1F1085 Drought Medicago tr... 42 0.069
gb|CA918795.1|CA918795 EST636513 MTUS Medicago truncatula c... 42 0.069
gb|AC158372.1| Medicago truncatula chromosome unknown clone... 42 0.069
>gb|BE942555.1|BE942555 EST422134 MGHG Medicago truncatula cDNA clone pMGHG-8J4, mRNA
sequence
Length = 514
Score = 91.7 bits (46), Expect = 8e-017
Identities = 130/158 (82%)
Strand = Plus / Minus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
||||||||||||||||||||||||||| |||| | |||||||| || || || ||||||
Sbjct: 402 tgcatccagtagctaggagttccatagagctgaaaagagttgaatacaattgcatccggg 343
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
|||||| | |||||| | || || || ||||| |||||||| ||||| || ||||||
Sbjct: 342 ttccacctcctatcattggcatttacaaaaagtggagcgtaactcgccatatggacaata 283
Query: 690 tcactgttcttctccagaccagtgaggaaagcagcttc 727
||||||||||| ||||| ||| | ||||| |||||||
Sbjct: 282 tcactgttcttttccagtccaataaggaatccagcttc 245
>gb|BE942556.1|BE942556 EST422135 MGHG Medicago truncatula cDNA clone pMGHG-8J4, mRNA
sequence
Length = 624
Score = 91.7 bits (46), Expect = 8e-017
Identities = 130/158 (82%)
Strand = Plus / Minus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
||||||||||||||||||||||||||| |||| | |||||||| || || || ||||||
Sbjct: 414 tgcatccagtagctaggagttccatagagctgaaaagagttgaatacaattgcatccggg 355
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
|||||| | |||||| | || || || ||||| |||||||| ||||| || ||||||
Sbjct: 354 ttccacctcctatcattggcatttacaaaaagtggagcgtaactcgccatatggacaata 295
Query: 690 tcactgttcttctccagaccagtgaggaaagcagcttc 727
||||||||||| ||||| ||| | ||||| |||||||
Sbjct: 294 tcactgttcttttccagtccaataaggaatccagcttc 257
>gb|BE998628.1|BE998628 EST430351 GVSN Medicago truncatula cDNA clone pGVSN-12F5, mRNA
sequence
Length = 580
Score = 91.7 bits (46), Expect = 8e-017
Identities = 130/158 (82%)
Strand = Plus / Minus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
||||||||||||||||||||||||||| |||| | |||||||| || || || ||||||
Sbjct: 416 tgcatccagtagctaggagttccatagagctgaaaagagttgaatacaattgcatccggg 357
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
|||||| | |||||| | || || || ||||| |||||||| ||||| || ||||||
Sbjct: 356 ttccacctcctatcattggcatttacaaaaagtggagcgtaactcgccatatggacaata 297
Query: 690 tcactgttcttctccagaccagtgaggaaagcagcttc 727
||||||||||| ||||| ||| | ||||| |||||||
Sbjct: 296 tcactgttcttttccagtccaataaggaatccagcttc 259
>gb|BQ138850.1|BQ138850 NF008B12PH1F1094 Phoma-infected Medicago truncatula cDNA clone
NF008B12PH 5', mRNA sequence
Length = 670
Score = 91.7 bits (46), Expect = 8e-017
Identities = 130/158 (82%)
Strand = Plus / Minus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
||||||||||||||||||||||||||| |||| | |||||||| || || || ||||||
Sbjct: 502 tgcatccagtagctaggagttccatagagctgaaaagagttgaatacaattgcatccggg 443
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
|||||| | |||||| | || || || ||||| |||||||| ||||| || ||||||
Sbjct: 442 ttccacctcctatcattggcatttacaaaaagtggagcgtaactcgccatatggacaata 383
Query: 690 tcactgttcttctccagaccagtgaggaaagcagcttc 727
||||||||||| ||||| ||| | ||||| |||||||
Sbjct: 382 tcactgttcttttccagtccaataaggaatccagcttc 345
>gb|CX521404.1|CX521404 s13dNF75F04VI032_450594 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 455
Score = 91.7 bits (46), Expect = 8e-017
Identities = 130/158 (82%)
Strand = Plus / Minus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
||||||||||||||||||||||||||| |||| | |||||||| || || || ||||||
Sbjct: 235 tgcatccagtagctaggagttccatagagctgaaaagagttgaatacaattgcatccggg 176
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
|||||| | |||||| | || || || ||||| |||||||| ||||| || ||||||
Sbjct: 175 ttccacctcctatcattggcatttacaaaaagtggagcgtaactcgccatatggacaata 116
Query: 690 tcactgttcttctccagaccagtgaggaaagcagcttc 727
||||||||||| ||||| ||| | ||||| |||||||
Sbjct: 115 tcactgttcttttccagtccaataaggaatccagcttc 78
>gb|AW773989.1|AW773989 EST332975 KV3 Medicago truncatula cDNA clone pKV3-16D2, mRNA
sequence
Length = 616
Score = 77.8 bits (39), Expect = 1e-012
Identities = 108/131 (82%)
Strand = Plus / Plus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
||||||||||||||||||||||||||| |||| | |||||||| || || || ||||||
Sbjct: 485 tgcatccagtagctaggagttccatagagctgaaaagagttgaatacaattgcatccggg 544
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
|||||| | |||||| | || || || ||||| |||||||| ||||| || || |||
Sbjct: 545 ttccacctcctatcattggcatttacaaaaagtggagcgtaactcgccatatggaccata 604
Query: 690 tcactgttctt 700
|||||||||||
Sbjct: 605 tcactgttctt 615
>gb|CA919533.1|CA919533 EST637251 MTUS Medicago truncatula cDNA clone MTUS-14H2, mRNA
sequence
Length = 668
Score = 69.9 bits (35), Expect = 3e-010
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
||||||||||||||||||||||||||| |||| | |||||||| || || || ||||||
Sbjct: 537 tgcatccagtagctaggagttccatagagctgaaaagagttgaatacaattgcatccggg 596
Query: 630 ttccacgtttggtcattgtcgttcacgaagagtggtgcgtaacttgccatctgaacaata 689
| ||| | |||||| | || || || ||||| |||||||| ||||| || ||||||
Sbjct: 597 gttcacctcctatcattggcatttacaaaaagtggagcgtaactcgccatatggacaata 656
Query: 690 tcactgttctt 700
|||||||||||
Sbjct: 657 tcactgttctt 667
>gb|BQ155462.1|BQ155462 NF080G03IR1F1024 Irradiated Medicago truncatula cDNA clone
NF080G03IR 5', mRNA sequence
Length = 653
Score = 67.9 bits (34), Expect = 1e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
||||||||||||||||||||||||||| |||| | |||||||| || || || ||||||
Sbjct: 66 tgcatccagtagctaggagttccatagagctgaaaagagttgaatacaattgcatccggg 7
Query: 630 ttccac 635
||||||
Sbjct: 6 ttccac 1
>gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete sequence
Length = 142659
Score = 67.9 bits (34), Expect = 1e-009
Identities = 58/66 (87%)
Strand = Plus / Minus
Query: 570 tgcatccagtagctaggagttccatagtgctgccaggagttgaagacgatagcgtccggg 629
||||||||||||||||||||||||||| |||| | |||||||| || || || ||||||
Sbjct: 58755 tgcatccagtagctaggagttccatagagctgaaaagagttgaatacaattgcatccggg 58696
Query: 630 ttccac 635
||||||
Sbjct: 58695 ttccac 58690
Score = 40.1 bits (20), Expect = 0.27
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 660 agtggtgcgtaacttgccatctgaacaatatcactg 695
||||| |||||||| ||||| || ||||||||||||
Sbjct: 58507 agtggagcgtaactcgccatatggacaatatcactg 58472
>gb|AW774464.1|AW774464 EST333615 KV3 Medicago truncatula cDNA clone pKV3-22L9, mRNA
sequence
Length = 566
Score = 54.0 bits (27), Expect = 2e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 661 gtggtgcgtaacttgccatctgaacaatatcactgttcttctccagaccagtgaggaaag 720
|||| |||||||| ||||| || ||||||||||||||||| ||||| ||| | |||||
Sbjct: 566 gtggagcgtaactcgccatatggacaatatcactgttcttttccagtccaataaggaatc 507
Query: 721 cagcttc 727
|||||||
Sbjct: 506 cagcttc 500
>emb|CR966622.1| mth4-4E19FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 638
Score = 42.1 bits (21), Expect = 0.069
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 63 aaacctgatgtggtttttatttcat 87
|||| ||||||||||||||||||||
Sbjct: 433 aaacatgatgtggtttttatttcat 409
>gb|BF636191.1|BF636191 NF069C11DT1F1085 Drought Medicago truncatula cDNA clone NF069C11DT
5', mRNA sequence
Length = 469
Score = 42.1 bits (21), Expect = 0.069
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 63 aaacctgatgtggtttttatttcat 87
|||| ||||||||||||||||||||
Sbjct: 365 aaacatgatgtggtttttatttcat 389
>gb|CA918795.1|CA918795 EST636513 MTUS Medicago truncatula cDNA clone MTUS-3C9, mRNA
sequence
Length = 690
Score = 42.1 bits (21), Expect = 0.069
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 63 aaacctgatgtggtttttatttcat 87
|||| ||||||||||||||||||||
Sbjct: 106 aaacatgatgtggtttttatttcat 82
>gb|AC158372.1| Medicago truncatula chromosome unknown clone mte1-28e19, *** SEQUENCING
IN PROGRESS ***, 8 ordered pieces
Length = 165155
Score = 42.1 bits (21), Expect = 0.069
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 63 aaacctgatgtggtttttatttcat 87
|||| ||||||||||||||||||||
Sbjct: 128299 aaacatgatgtggtttttatttcat 128275
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 122,945
Number of Sequences: 392609
Number of extensions: 122945
Number of successful extensions: 8273
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8244
Number of HSP's gapped (non-prelim): 29
length of query: 780
length of database: 441,732,993
effective HSP length: 20
effective length of query: 760
effective length of database: 433,880,813
effective search space: 329749417880
effective search space used: 329749417880
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)