BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.22
(333 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DW015742.1|DW015742 EST1224703 MTY Medicago truncatula c... 40 0.11
gb|AC138016.14| Medicago truncatula clone mth2-34f15, compl... 40 0.11
emb|CR321867.1| mte1-49A11FM1 BAC end, cultivar Jemalong A1... 38 0.44
gb|AC144344.14| Medicago truncatula clone mth2-8c18, WORKIN... 38 0.44
gb|AC145202.23| Medicago truncatula clone mth2-15e9, WORKIN... 38 0.44
gb|AC162162.15| Medicago truncatula clone mth2-71a20, WORKI... 38 0.44
gb|AC132565.28| Medicago truncatula clone mth2-4a8, complet... 36 1.8
gb|AI974587.1|AI974587 T113037e KV2 Medicago truncatula cDN... 34 6.9
gb|AW685200.1|AW685200 NF027E09NR1F1000 Nodulated root Medi... 34 6.9
gb|AW774242.1|AW774242 EST333393 KV3 Medicago truncatula cD... 34 6.9
gb|BE124555.1|BE124555 EST393590 GVN Medicago truncatula cD... 34 6.9
gb|AL365967.1|AL365967 MtBA03E01F1 MtBA Medicago truncatula... 34 6.9
gb|AL366628.1|AL366628 MtBA09B10F1 MtBA Medicago truncatula... 34 6.9
gb|AL369524.1|AL369524 MtBA31F06F1 MtBA Medicago truncatula... 34 6.9
gb|AL369929.1|AL369929 MtBA34D03F1 MtBA Medicago truncatula... 34 6.9
gb|AL370567.1|AL370567 MtBA38E12R1 MtBA Medicago truncatula... 34 6.9
gb|AL371985.1|AL371985 MtBA47H02F1 MtBA Medicago truncatula... 34 6.9
gb|AL379117.1|AL379117 MtBB43A03F1 MtBB Medicago truncatula... 34 6.9
gb|AL381124.1|AL381124 MtBB57A11F1 MtBB Medicago truncatula... 34 6.9
gb|BE941546.1|BE941546 EST421116 MGHG Medicago truncatula c... 34 6.9
gb|BE941547.1|BE941547 EST421117 MGHG Medicago truncatula c... 34 6.9
gb|BE942201.1|BE942201 EST421780 MGHG Medicago truncatula c... 34 6.9
gb|BF004003.1|BF004003 EST432492 KV1 Medicago truncatula cD... 34 6.9
gb|BG644576.1|BG644576 EST506195 KV3 Medicago truncatula cD... 34 6.9
gb|BG644871.1|BG644871 EST506490 KV3 Medicago truncatula cD... 34 6.9
gb|BI308207.1|BI308207 EST529617 GPOD Medicago truncatula c... 34 6.9
gb|BQ164894.1|BQ164894 EST610763 KVKC Medicago truncatula c... 34 6.9
gb|CA922276.1|CA922276 EST639994 MTUS Medicago truncatula c... 34 6.9
gb|CX532567.1|CX532567 s13dNF73F09MJ075_271421 Methyl Jasmo... 34 6.9
gb|CX532765.1|CX532765 s13dNF71B02MJ013_271813 Methyl Jasmo... 34 6.9
gb|CX534022.1|CX534022 s13dNF0PA09MJ065_321806 Methyl Jasmo... 34 6.9
gb|AC126007.16| Medicago truncatula clone mth2-11o4, comple... 34 6.9
>gb|DW015742.1|DW015742 EST1224703 MTY Medicago truncatula cDNA clone MTYA914, mRNA
sequence
Length = 397
Score = 40.1 bits (20), Expect = 0.11
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 11 aatgtgcaaggctacttcgcttggtctctgctggacaactttgaatgg 58
||||||||||| || || || ||||| || |||||||||||||||||
Sbjct: 150 aatgtgcaaggatattttgcatggtcccttttggacaactttgaatgg 197
>gb|AC138016.14| Medicago truncatula clone mth2-34f15, complete sequence
Length = 116164
Score = 40.1 bits (20), Expect = 0.11
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 11 aatgtgcaaggctacttcgcttggtctctgctggacaactttgaatgg 58
||||||||||| || || || ||||| || |||||||||||||||||
Sbjct: 105508 aatgtgcaaggatattttgcatggtcccttttggacaactttgaatgg 105555
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 81025 tggacaactttgaatgg 81041
>emb|CR321867.1| mte1-49A11FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 769
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 153 agttcaacaccgcgaaaaa 171
|||||||||||||||||||
Sbjct: 361 agttcaacaccgcgaaaaa 379
>gb|AC144344.14| Medicago truncatula clone mth2-8c18, WORKING DRAFT SEQUENCE, 12
unordered pieces
Length = 83825
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 153 agttcaacaccgcgaaaaa 171
|||||||||||||||||||
Sbjct: 17344 agttcaacaccgcgaaaaa 17326
>gb|AC145202.23| Medicago truncatula clone mth2-15e9, WORKING DRAFT SEQUENCE
Length = 89293
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 153 agttcaacaccgcgaaaaa 171
|||||||||||||||||||
Sbjct: 74172 agttcaacaccgcgaaaaa 74190
>gb|AC162162.15| Medicago truncatula clone mth2-71a20, WORKING DRAFT SEQUENCE, 9
unordered pieces
Length = 132597
Score = 38.2 bits (19), Expect = 0.44
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 153 agttcaacaccgcgaaaaa 171
|||||||||||||||||||
Sbjct: 63228 agttcaacaccgcgaaaaa 63210
>gb|AC132565.28| Medicago truncatula clone mth2-4a8, complete sequence
Length = 134155
Score = 36.2 bits (18), Expect = 1.8
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 146 ttgaaagagttcaacacc 163
||||||||||||||||||
Sbjct: 25748 ttgaaagagttcaacacc 25765
>gb|AI974587.1|AI974587 T113037e KV2 Medicago truncatula cDNA clone pKV2-1B8, mRNA sequence
Length = 453
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 415 tggacaactttgaatgg 399
>gb|AW685200.1|AW685200 NF027E09NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF027E09NR 5', mRNA sequence
Length = 569
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 105 tggacaactttgaatgg 121
>gb|AW774242.1|AW774242 EST333393 KV3 Medicago truncatula cDNA clone pKV3-22C7, mRNA
sequence
Length = 671
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 471 tggacaactttgaatgg 487
>gb|BE124555.1|BE124555 EST393590 GVN Medicago truncatula cDNA clone pGVN-60E24, mRNA
sequence
Length = 642
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 443 tggacaactttgaatgg 459
>gb|AL365967.1|AL365967 MtBA03E01F1 MtBA Medicago truncatula cDNA clone MtBA03E01 T3, mRNA
sequence
Length = 454
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 220 tggacaactttgaatgg 236
>gb|AL366628.1|AL366628 MtBA09B10F1 MtBA Medicago truncatula cDNA clone MtBA09B10 T3, mRNA
sequence
Length = 528
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 467 tggacaactttgaatgg 451
>gb|AL369524.1|AL369524 MtBA31F06F1 MtBA Medicago truncatula cDNA clone MtBA31F06 T3, mRNA
sequence
Length = 470
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 159 tggacaactttgaatgg 175
>gb|AL369929.1|AL369929 MtBA34D03F1 MtBA Medicago truncatula cDNA clone MtBA34D03 T3, mRNA
sequence
Length = 464
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 433 tggacaactttgaatgg 449
>gb|AL370567.1|AL370567 MtBA38E12R1 MtBA Medicago truncatula cDNA clone MtBA38E12 T7, mRNA
sequence
Length = 526
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 87 tggacaactttgaatgg 103
>gb|AL371985.1|AL371985 MtBA47H02F1 MtBA Medicago truncatula cDNA clone MtBA47H02 T3, mRNA
sequence
Length = 417
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 216 tggacaactttgaatgg 232
>gb|AL379117.1|AL379117 MtBB43A03F1 MtBB Medicago truncatula cDNA clone MtBB43A03 T3, mRNA
sequence
Length = 331
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 233 tggacaactttgaatgg 249
>gb|AL381124.1|AL381124 MtBB57A11F1 MtBB Medicago truncatula cDNA clone MtBB57A11 T3, mRNA
sequence
Length = 466
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 416 tggacaactttgaatgg 432
>gb|BE941546.1|BE941546 EST421116 MGHG Medicago truncatula cDNA clone pMGHG-4E20, mRNA
sequence
Length = 627
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 327 tggacaactttgaatgg 343
>gb|BE941547.1|BE941547 EST421117 MGHG Medicago truncatula cDNA clone pMGHG-4E22, mRNA
sequence
Length = 668
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 329 tggacaactttgaatgg 345
>gb|BE942201.1|BE942201 EST421780 MGHG Medicago truncatula cDNA clone pMGHG-7F22, mRNA
sequence
Length = 633
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 219 tggacaactttgaatgg 235
>gb|BF004003.1|BF004003 EST432492 KV1 Medicago truncatula cDNA clone pKV1-14C24, mRNA
sequence
Length = 851
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 827 tggacaactttgaatgg 843
>gb|BG644576.1|BG644576 EST506195 KV3 Medicago truncatula cDNA clone pKV3-37N21 5' end,
mRNA sequence
Length = 754
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 650 tggacaactttgaatgg 666
>gb|BG644871.1|BG644871 EST506490 KV3 Medicago truncatula cDNA clone pKV3-38H17 5' end,
mRNA sequence
Length = 805
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 402 tggacaactttgaatgg 418
>gb|BI308207.1|BI308207 EST529617 GPOD Medicago truncatula cDNA clone pGPOD-2M24 5' end,
mRNA sequence
Length = 618
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 565 tggacaactttgaatgg 581
>gb|BQ164894.1|BQ164894 EST610763 KVKC Medicago truncatula cDNA clone pKVKC-3D5, mRNA
sequence
Length = 825
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 405 tggacaactttgaatgg 389
>gb|CA922276.1|CA922276 EST639994 MTUS Medicago truncatula cDNA clone MTUS-51F9, mRNA
sequence
Length = 835
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 769 tggacaactttgaatgg 753
>gb|CX532567.1|CX532567 s13dNF73F09MJ075_271421 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 658
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 637 tggacaactttgaatgg 653
>gb|CX532765.1|CX532765 s13dNF71B02MJ013_271813 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 643
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 147 tggacaactttgaatgg 163
>gb|CX534022.1|CX534022 s13dNF0PA09MJ065_321806 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 661
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 42 tggacaactttgaatgg 58
|||||||||||||||||
Sbjct: 644 tggacaactttgaatgg 660
>gb|AC126007.16| Medicago truncatula clone mth2-11o4, complete sequence
Length = 106747
Score = 34.2 bits (17), Expect = 6.9
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 18 aaggctacttcgcttgg 34
|||||||||||||||||
Sbjct: 64968 aaggctacttcgcttgg 64952
Database: Mt_nucl_with_EST.fasta
Posted date: May 2, 2006 2:46 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,808
Number of Sequences: 392609
Number of extensions: 50808
Number of successful extensions: 3156
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3120
Number of HSP's gapped (non-prelim): 36
length of query: 333
length of database: 441,732,993
effective HSP length: 19
effective length of query: 314
effective length of database: 434,273,422
effective search space: 136361854508
effective search space used: 136361854508
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)