BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.4
(753 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF005276.1|BF005276 EST433774 DSLC Medicago truncatula c... 44 0.017
gb|AC144482.11| Medicago truncatula clone mth2-10p1, comple... 44 0.017
gb|AC126786.22| Medicago truncatula clone mth2-8c2, complet... 44 0.017
gb|AC146630.25| Medicago truncatula clone mth2-7f22, comple... 44 0.017
gb|AW329727.1|AW329727 N200993e rootphos(-) Medicago trunca... 42 0.067
gb|AC146941.8| Medicago truncatula clone mth2-133o10, compl... 42 0.067
gb|AC136507.19| Medicago truncatula clone mth2-24o19, compl... 42 0.067
>gb|BF005276.1|BF005276 EST433774 DSLC Medicago truncatula cDNA clone pDSLC-31P12, mRNA
sequence
Length = 517
Score = 44.1 bits (22), Expect = 0.017
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 122 tattattattacgatgatgattatta 147
||||||||||| ||||||||||||||
Sbjct: 500 tattattattatgatgatgattatta 475
>gb|AC144482.11| Medicago truncatula clone mth2-10p1, complete sequence
Length = 121112
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 118 ttattattattattacgatgatgattatta 147
|||||||||||||||| |||||||| ||||
Sbjct: 17055 ttattattattattactatgatgatgatta 17084
>gb|AC126786.22| Medicago truncatula clone mth2-8c2, complete sequence
Length = 115134
Score = 44.1 bits (22), Expect = 0.017
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 118 ttattattattattacgatgatgattatta 147
|||||||||||||||| |||||||| ||||
Sbjct: 8619 ttattattattattactatgatgatgatta 8648
>gb|AC146630.25| Medicago truncatula clone mth2-7f22, complete sequence
Length = 124189
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 116 ttttattattattattacgatg 137
||||||||||||||||||||||
Sbjct: 95164 ttttattattattattacgatg 95143
>gb|AW329727.1|AW329727 N200993e rootphos(-) Medicago truncatula cDNA clone MHRP-23D10,
mRNA sequence
Length = 231
Score = 42.1 bits (21), Expect = 0.067
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 118 ttattattattattacgatgatgat 142
||||||||||||||| |||||||||
Sbjct: 118 ttattattattattatgatgatgat 94
>gb|AC146941.8| Medicago truncatula clone mth2-133o10, complete sequence
Length = 134901
Score = 42.1 bits (21), Expect = 0.067
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 118 ttattattattattacgatgatgat 142
||||||||||||||| |||||||||
Sbjct: 85690 ttattattattattatgatgatgat 85714
>gb|AC136507.19| Medicago truncatula clone mth2-24o19, complete sequence
Length = 131025
Score = 42.1 bits (21), Expect = 0.067
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 118 ttattattattattacgatgatgat 142
||||||||||||||| |||||||||
Sbjct: 72207 ttattattattattatgatgatgat 72183
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 139,974
Number of Sequences: 392609
Number of extensions: 139974
Number of successful extensions: 31019
Number of sequences better than 0.5: 7
Number of HSP's better than 0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30970
Number of HSP's gapped (non-prelim): 47
length of query: 753
length of database: 441,732,993
effective HSP length: 19
effective length of query: 734
effective length of database: 434,273,422
effective search space: 318756691748
effective search space used: 318756691748
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)