BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161200.2.2
         (1078 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CG934104.1|CG934104  MBENC70TR mth2 Medicago truncatula g...    44   0.024
gb|CG959762.1|CG959762  MBEKX59TR mth2 Medicago truncatula g...    44   0.024
gb|CG961263.1|CG961263  MBEJP43TRB mth2 Medicago truncatula ...    44   0.024
gb|BF648440.1|BF648440  NF047E08EC1F1066 Elicited cell cultu...    44   0.024
gb|BF649782.1|BF649782  NF084A11EC1F1083 Elicited cell cultu...    44   0.024
gb|BQ139914.1|BQ139914  NF026G11PH1F1087 Phoma-infected Medi...    44   0.024
gb|AC151000.3|  Medicago truncatula chromosome 2 BAC clone m...    44   0.024
gb|AC150372.15|  Medicago truncatula clone mth2-151k24, comp...    40   0.38 

>gb|CG934104.1|CG934104 MBENC70TR mth2 Medicago truncatula genomic clone 6L19, DNA sequence
          Length = 882

 Score = 44.1 bits (22), Expect = 0.024
 Identities = 94/118 (79%)
 Strand = Plus / Plus

                                                                       
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
           |||||||| ||||||||||| || || || | |||||| ||||| ||  | ||| | |||
Sbjct: 134 aaccatggtaggcctcagcctctccaatatgttgtcaatgcagcctttttggctacccta 193

                                                                     
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttct 278
           ||||| || || ||||| || || || || ||||| ||||| || |||||||||||||
Sbjct: 194 tacagtgattaccttgatgccgctgatactcctggatggtattgtggacctaacttct 251



>gb|CG959762.1|CG959762 MBEKX59TR mth2 Medicago truncatula genomic clone 77J22, DNA
           sequence
          Length = 930

 Score = 44.1 bits (22), Expect = 0.024
 Identities = 94/118 (79%)
 Strand = Plus / Plus

                                                                       
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
           |||||||| ||||||||||| || || || | |||||| ||||| ||  | ||| | |||
Sbjct: 160 aaccatggtaggcctcagcctctccaatatgttgtcaatgcagcctttttggctacccta 219

                                                                     
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttct 278
           ||||| || || ||||| || || || || ||||| ||||| || |||||||||||||
Sbjct: 220 tacagtgattaccttgatgccgctgatactcctggatggtattgtggacctaacttct 277



>gb|CG961263.1|CG961263 MBEJP43TRB mth2 Medicago truncatula genomic clone 69H14, DNA
           sequence
          Length = 918

 Score = 44.1 bits (22), Expect = 0.024
 Identities = 94/118 (79%)
 Strand = Plus / Plus

                                                                       
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
           |||||||| ||||||||||| || || || | |||||| ||||| ||  | ||| | |||
Sbjct: 160 aaccatggtaggcctcagcctctccaatatgttgtcaatgcagcctttttggctacccta 219

                                                                     
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttct 278
           ||||| || || ||||| || || || || ||||| ||||| || |||||||||||||
Sbjct: 220 tacagtgattaccttgatgccgctgatactcctggatggtattgtggacctaacttct 277



>gb|BF648440.1|BF648440 NF047E08EC1F1066 Elicited cell culture Medicago truncatula cDNA
           clone NF047E08EC 5', mRNA sequence
          Length = 647

 Score = 44.1 bits (22), Expect = 0.024
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                       
Query: 300 agtttgccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacg 359
           ||||||||||| ||||| | || ||||||||||| ||||| |||  ||| ||||| || |
Sbjct: 108 agtttgccaggacacagattgattacatccttggtaagaatccacggaaaatgagttatg 167

                     
Query: 360 ttgtgggttt 369
           |||| |||||
Sbjct: 168 ttgttggttt 177



>gb|BF649782.1|BF649782 NF084A11EC1F1083 Elicited cell culture Medicago truncatula cDNA
           clone NF084A11EC 5', mRNA sequence
          Length = 666

 Score = 44.1 bits (22), Expect = 0.024
 Identities = 94/118 (79%)
 Strand = Plus / Plus

                                                                       
Query: 161 aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
           |||||||| ||||||||||| || || || | |||||| ||||| ||  | ||| | |||
Sbjct: 514 aaccatggtaggcctcagcctctccaatatgttgtcaatgcagcctttttggctacccta 573

                                                                     
Query: 221 tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttct 278
           ||||| || || ||||| || || || || ||||| ||||| || |||||||||||||
Sbjct: 574 tacagtgattaccttgatgccgctgatactcctggatggtattggggacctaacttct 631



>gb|BQ139914.1|BQ139914 NF026G11PH1F1087 Phoma-infected Medicago truncatula cDNA clone
           NF026G11PH 5', mRNA sequence
          Length = 639

 Score = 44.1 bits (22), Expect = 0.024
 Identities = 58/70 (82%)
 Strand = Plus / Plus

                                                                       
Query: 300 agtttgccaggtcacagctcgactacatccttggcaagaacccattgaagatgagctacg 359
           ||||||||||| ||||| | || ||||||||||| ||||| |||  ||| ||||| || |
Sbjct: 118 agtttgccaggacacagattgattacatccttggtaagaatccacggaaaatgagttatg 177

                     
Query: 360 ttgtgggttt 369
           |||| |||||
Sbjct: 178 ttgttggttt 187



>gb|AC151000.3| Medicago truncatula chromosome 2 BAC clone mth2-193p1, complete
             sequence
          Length = 120579

 Score = 44.1 bits (22), Expect = 0.024
 Identities = 94/118 (79%)
 Strand = Plus / Plus

                                                                         
Query: 161   aaccatggaaggcctcagccacttcagtacgctgtcaacgcagctttccttgcttctcta 220
             |||||||| ||||||||||| || || || | |||||| ||||| ||  | ||| | |||
Sbjct: 24562 aaccatggtaggcctcagcctctccaatatgttgtcaatgcagcctttttggctacccta 24621

                                                                       
Query: 221   tacagcgactatcttgaagctgcagacacgcctgggtggtactgcggacctaacttct 278
             ||||| || || ||||| || || || || ||||| ||||| || |||||||||||||
Sbjct: 24622 tacagtgattaccttgatgccgctgatactcctggatggtattgtggacctaacttct 24679



>gb|AC150372.15| Medicago truncatula clone mth2-151k24, complete sequence
          Length = 100538

 Score = 40.1 bits (20), Expect = 0.38
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 334  caagaacccattgaagatga 353
            ||||||||||||||||||||
Sbjct: 3947 caagaacccattgaagatga 3928



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 236,779
Number of Sequences: 392609
Number of extensions: 236779
Number of successful extensions: 17113
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17081
Number of HSP's gapped (non-prelim): 32
length of query: 1078
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1058
effective length of database: 433,880,813
effective search space: 459045900154
effective search space used: 459045900154
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)