BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161200.2.1
(845 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG959762.1|CG959762 MBEKX59TR mth2 Medicago truncatula g... 42 0.075
gb|AL376941.1|AL376941 MtBB27D09F1 MtBB Medicago truncatula... 42 0.075
gb|BF648440.1|BF648440 NF047E08EC1F1066 Elicited cell cultu... 42 0.075
gb|BI270018.1|BI270018 NF004C05FL1F1038 Developing flower M... 42 0.075
gb|BI310382.1|BI310382 EST5312132 GESD Medicago truncatula ... 42 0.075
gb|BQ139914.1|BQ139914 NF026G11PH1F1087 Phoma-infected Medi... 42 0.075
gb|AJ846661.1|AJ846661 AJ846661 MtSN0 Medicago truncatula c... 42 0.075
gb|CX522366.1|CX522366 s13dNF78H01VI012_470536 Virus-Infect... 42 0.075
gb|AC151000.3| Medicago truncatula chromosome 2 BAC clone m... 42 0.075
emb|CT009749.1| Medicago truncatula chromosome 5 clone mth2... 40 0.30
>gb|CG959762.1|CG959762 MBEKX59TR mth2 Medicago truncatula genomic clone 77J22, DNA
sequence
Length = 930
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 504 gcaagggtaggctctgtgtagttgtagtt 532
||||| || ||||||||||||||||||||
Sbjct: 929 gcaagtgttggctctgtgtagttgtagtt 901
>gb|AL376941.1|AL376941 MtBB27D09F1 MtBB Medicago truncatula cDNA clone MtBB27D09 T3, mRNA
sequence
Length = 480
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 504 gcaagggtaggctctgtgtagttgtagtt 532
||||| || ||||||||||||||||||||
Sbjct: 87 gcaagtgttggctctgtgtagttgtagtt 59
>gb|BF648440.1|BF648440 NF047E08EC1F1066 Elicited cell culture Medicago truncatula cDNA
clone NF047E08EC 5', mRNA sequence
Length = 647
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 504 gcaagggtaggctctgtgtagttgtagtt 532
||||| || ||||||||||||||||||||
Sbjct: 387 gcaagtgttggctctgtgtagttgtagtt 359
>gb|BI270018.1|BI270018 NF004C05FL1F1038 Developing flower Medicago truncatula cDNA clone
NF004C05FL 5', mRNA sequence
Length = 526
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 504 gcaagggtaggctctgtgtagttgtagtt 532
||||| || ||||||||||||||||||||
Sbjct: 89 gcaagtgttggctctgtgtagttgtagtt 61
>gb|BI310382.1|BI310382 EST5312132 GESD Medicago truncatula cDNA clone pGESD7N4 5' end,
mRNA sequence
Length = 579
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 504 gcaagggtaggctctgtgtagttgtagtt 532
||||| || ||||||||||||||||||||
Sbjct: 261 gcaagtgttggctctgtgtagttgtagtt 233
>gb|BQ139914.1|BQ139914 NF026G11PH1F1087 Phoma-infected Medicago truncatula cDNA clone
NF026G11PH 5', mRNA sequence
Length = 639
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 504 gcaagggtaggctctgtgtagttgtagtt 532
||||| || ||||||||||||||||||||
Sbjct: 397 gcaagtgttggctctgtgtagttgtagtt 369
>gb|AJ846661.1|AJ846661 AJ846661 MtSN0 Medicago truncatula cDNA clone MtN003C10S6, mRNA
sequence
Length = 307
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 504 gcaagggtaggctctgtgtagttgtagtt 532
||||| || ||||||||||||||||||||
Sbjct: 128 gcaagtgttggctctgtgtagttgtagtt 100
>gb|CX522366.1|CX522366 s13dNF78H01VI012_470536 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 465
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 504 gcaagggtaggctctgtgtagttgtagtt 532
||||| || ||||||||||||||||||||
Sbjct: 84 gcaagtgttggctctgtgtagttgtagtt 56
>gb|AC151000.3| Medicago truncatula chromosome 2 BAC clone mth2-193p1, complete
sequence
Length = 120579
Score = 42.1 bits (21), Expect = 0.075
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 504 gcaagggtaggctctgtgtagttgtagtt 532
||||| || ||||||||||||||||||||
Sbjct: 25332 gcaagtgttggctctgtgtagttgtagtt 25304
>emb|CT009749.1| Medicago truncatula chromosome 5 clone mth2-46e3, COMPLETE SEQUENCE
Length = 138861
Score = 40.1 bits (20), Expect = 0.30
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 66 ataacaatttgtaaaggtac 85
||||||||||||||||||||
Sbjct: 29858 ataacaatttgtaaaggtac 29877
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 194,546
Number of Sequences: 392609
Number of extensions: 194546
Number of successful extensions: 13899
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13874
Number of HSP's gapped (non-prelim): 25
length of query: 845
length of database: 441,732,993
effective HSP length: 20
effective length of query: 825
effective length of database: 433,880,813
effective search space: 357951670725
effective search space used: 357951670725
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)