BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805202.2.1
(1139 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW687624.2|AW687624 NF011F05RT1F1046 Developing root Med... 64 3e-008
gb|AJ497137.1|AJ497137 AJ497137 MTFLOW Medicago truncatula ... 64 3e-008
gb|CA917721.1|CA917721 EST641868 GPOD Medicago truncatula c... 64 3e-008
gb|CX521899.1|CX521899 s13dNF1FE12VI099_469602 Virus-Infect... 64 3e-008
gb|CX523689.1|CX523689 s13dNF02G07AT054_322762 Aphid-Infect... 64 3e-008
gb|CX539846.1|CX539846 s13dNF0HH01GS012_462964 Germinating ... 64 3e-008
gb|BI310113.1|BI310113 EST5311863 GESD Medicago truncatula ... 58 2e-006
gb|DW017475.1|DW017475 EST1226436 MTY Medicago truncatula c... 56 7e-006
gb|AC146548.9| Medicago truncatula clone mth2-2p3, complete... 54 3e-005
gb|AC146329.18| Medicago truncatula clone mth2-5i21, comple... 54 3e-005
gb|AC146775.8| Medicago truncatula clone mth2-95g14, comple... 44 0.026
>gb|AW687624.2|AW687624 NF011F05RT1F1046 Developing root Medicago truncatula cDNA clone
NF011F05RT 5', mRNA sequence
Length = 476
Score = 63.9 bits (32), Expect = 3e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 725 tcgaatagagtgataaatgagtacagcacccagtacgtgagccattgctgatcatccaca 784
||||| |||||||| ||||| ||||| ||||| || || ||||| || ||||||||||||
Sbjct: 291 tcgaaaagagtgatcaatgaatacagaacccaataggttagccactgttgatcatccaca 232
Query: 785 gcagattttgtttcaattgctctaacagaggcatacagaggata 828
| ||| || | |||||||| ||||| || ||||| ||||||||
Sbjct: 231 ggagacttgctctcaattgccctaactgaagcatatagaggata 188
>gb|AJ497137.1|AJ497137 AJ497137 MTFLOW Medicago truncatula cDNA clone mt--abc955105a12,
mRNA sequence
Length = 377
Score = 63.9 bits (32), Expect = 3e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 725 tcgaatagagtgataaatgagtacagcacccagtacgtgagccattgctgatcatccaca 784
||||| |||||||| ||||| ||||| ||||| || || ||||| || ||||||||||||
Sbjct: 273 tcgaaaagagtgatcaatgaatacagaacccaataggttagccactgttgatcatccaca 214
Query: 785 gcagattttgtttcaattgctctaacagaggcatacagaggata 828
| ||| || | |||||||| ||||| || ||||| ||||||||
Sbjct: 213 ggagacttgctctcaattgccctaactgaagcatatagaggata 170
>gb|CA917721.1|CA917721 EST641868 GPOD Medicago truncatula cDNA clone GPOD-37E21, mRNA
sequence
Length = 701
Score = 63.9 bits (32), Expect = 3e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 725 tcgaatagagtgataaatgagtacagcacccagtacgtgagccattgctgatcatccaca 784
||||| |||||||| ||||| ||||| ||||| || || ||||| || ||||||||||||
Sbjct: 267 tcgaaaagagtgatcaatgaatacagaacccaataggttagccactgttgatcatccaca 208
Query: 785 gcagattttgtttcaattgctctaacagaggcatacagaggata 828
| ||| || | |||||||| ||||| || ||||| ||||||||
Sbjct: 207 ggagacttgctctcaattgccctaactgaagcatatagaggata 164
>gb|CX521899.1|CX521899 s13dNF1FE12VI099_469602 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 614
Score = 63.9 bits (32), Expect = 3e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 725 tcgaatagagtgataaatgagtacagcacccagtacgtgagccattgctgatcatccaca 784
||||| |||||||| ||||| ||||| ||||| || || ||||| || ||||||||||||
Sbjct: 300 tcgaaaagagtgatcaatgaatacagaacccaataggttagccactgttgatcatccaca 241
Query: 785 gcagattttgtttcaattgctctaacagaggcatacagaggata 828
| ||| || | |||||||| ||||| || ||||| ||||||||
Sbjct: 240 ggagacttgctctcaattgccctaactgaagcatatagaggata 197
>gb|CX523689.1|CX523689 s13dNF02G07AT054_322762 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 692
Score = 63.9 bits (32), Expect = 3e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 725 tcgaatagagtgataaatgagtacagcacccagtacgtgagccattgctgatcatccaca 784
||||| |||||||| ||||| ||||| ||||| || || ||||| || ||||||||||||
Sbjct: 375 tcgaaaagagtgatcaatgaatacagaacccaataggttagccactgttgatcatccaca 316
Query: 785 gcagattttgtttcaattgctctaacagaggcatacagaggata 828
| ||| || | |||||||| ||||| || ||||| ||||||||
Sbjct: 315 ggagacttgctctcaattgccctaactgaagcatatagaggata 272
>gb|CX539846.1|CX539846 s13dNF0HH01GS012_462964 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 392
Score = 63.9 bits (32), Expect = 3e-008
Identities = 86/104 (82%)
Strand = Plus / Minus
Query: 725 tcgaatagagtgataaatgagtacagcacccagtacgtgagccattgctgatcatccaca 784
||||| |||||||| ||||| ||||| ||||| || || ||||| || ||||||||||||
Sbjct: 271 tcgaaaagagtgatcaatgaatacagaacccaataggttagccactgttgatcatccaca 212
Query: 785 gcagattttgtttcaattgctctaacagaggcatacagaggata 828
| ||| || | |||||||| ||||| || ||||| ||||||||
Sbjct: 211 ggagacttgctctcaattgccctaactgaagcatatagaggata 168
>gb|BI310113.1|BI310113 EST5311863 GESD Medicago truncatula cDNA clone pGESD7K13 5' end,
mRNA sequence
Length = 528
Score = 58.0 bits (29), Expect = 2e-006
Identities = 87/105 (82%), Gaps = 1/105 (0%)
Strand = Plus / Minus
Query: 725 tcgaatagagtgataaatgagtacagcacccagtacgtgagccattgctgatcatccaca 784
||||| |||||||| ||||| ||||| ||||| || || ||||| || ||||||||||||
Sbjct: 170 tcgaaaagagtgatcaatgaatacagaacccaataggttagccactgttgatcatccaca 111
Query: 785 gcagattttgtt-tcaattgctctaacagaggcatacagaggata 828
| ||| || || |||||||| ||||| || ||||| ||||||||
Sbjct: 110 ggagacttgcttctcaattgccctaactgaagcatatagaggata 66
>gb|DW017475.1|DW017475 EST1226436 MTY Medicago truncatula cDNA clone MTYAU11, mRNA
sequence
Length = 795
Score = 56.0 bits (28), Expect = 7e-006
Identities = 85/104 (81%)
Strand = Plus / Minus
Query: 725 tcgaatagagtgataaatgagtacagcacccagtacgtgagccattgctgatcatccaca 784
||||| |||||||| ||||| ||||| ||||| || || ||||| || ||||||||||||
Sbjct: 311 tcgaaaagagtgatcaatgaatacagaacccaataggttagccactgttgatcatccaca 252
Query: 785 gcagattttgtttcaattgctctaacagaggcatacagaggata 828
| ||| || | |||| ||| ||||| || ||||| ||||||||
Sbjct: 251 ggagacttgctctcaactgccctaactgaagcatatagaggata 208
>gb|AC146548.9| Medicago truncatula clone mth2-2p3, complete sequence
Length = 129327
Score = 54.0 bits (27), Expect = 3e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 725 tcgaatagagtgataaatgagtacagcacccagtacgtgagccattgctgatcatccaca 784
||||| |||||||| ||||| ||||| ||||| || || ||||| || ||||||||||||
Sbjct: 34565 tcgaaaagagtgatcaatgaatacagaacccaataggttagccactgttgatcatccaca 34506
Query: 785 gcagattttgtttcaattgctctaacagaggcata 819
| ||| || | |||||||| ||||| || |||||
Sbjct: 34505 ggagacttgctctcaattgccctaactgaagcata 34471
>gb|AC146329.18| Medicago truncatula clone mth2-5i21, complete sequence
Length = 129327
Score = 54.0 bits (27), Expect = 3e-005
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 725 tcgaatagagtgataaatgagtacagcacccagtacgtgagccattgctgatcatccaca 784
||||| |||||||| ||||| ||||| ||||| || || ||||| || ||||||||||||
Sbjct: 34565 tcgaaaagagtgatcaatgaatacagaacccaataggttagccactgttgatcatccaca 34506
Query: 785 gcagattttgtttcaattgctctaacagaggcata 819
| ||| || | |||||||| ||||| || |||||
Sbjct: 34505 ggagacttgctctcaattgccctaactgaagcata 34471
>gb|AC146775.8| Medicago truncatula clone mth2-95g14, complete sequence
Length = 139593
Score = 44.1 bits (22), Expect = 0.026
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1042 tttcgttctctttcttccttca 1063
||||||||||||||||||||||
Sbjct: 95305 tttcgttctctttcttccttca 95326
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 298,914
Number of Sequences: 392609
Number of extensions: 298914
Number of successful extensions: 25231
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25173
Number of HSP's gapped (non-prelim): 58
length of query: 1139
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1119
effective length of database: 433,880,813
effective search space: 485512629747
effective search space used: 485512629747
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)