BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805022.2.2
(1462 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG453840.1|BG453840 NF094G07LF1F1053 Developing leaf Med... 119 7e-025
gb|CX530692.1|CX530692 s13dNF58F03MJ028_247400 Methyl Jasmo... 119 7e-025
gb|CX535337.1|CX535337 s13dNF39H06MJ060_388843 Methyl Jasmo... 119 7e-025
gb|CX538715.1|CX538715 s13dNF0IF09GS075_460682 Germinating ... 119 7e-025
gb|BF647183.1|BF647183 NF040A08EC1F1056 Elicited cell cultu... 82 2e-013
gb|BG450610.1|BG450610 NF036E05DT1F1039 Drought Medicago tr... 74 4e-011
emb|CR954185.1| Medicago truncatula chromosome 5 clone mth4... 44 0.033
gb|AI974610.1|AI974610 T113060e KV2 Medicago truncatula cDN... 42 0.13
>gb|BG453840.1|BG453840 NF094G07LF1F1053 Developing leaf Medicago truncatula cDNA clone
NF094G07LF 5', mRNA sequence
Length = 685
Score = 119 bits (60), Expect = 7e-025
Identities = 204/252 (80%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || || ||||||||||||||||| |||||||| || ||| | |||||||| ||
Sbjct: 121 ggaaattattgatatgtgtgattatgctgttgggctaagccgacaattgaatggatcaat 180
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
||| ||||| ||||| ||| | ||||||||| | ||||| ||||| || || ||| | ||
Sbjct: 181 tatcccatcggaacgtccagatcatatgatgtttgaggtatggaacccactaggaatagt 240
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
|| || || || || || || || || |||||||| || || |||||||||||||||||
Sbjct: 241 tggcgtaatcactgctttcaactttccatgtgctgttctaggatggaatgcttgcattgc 300
Query: 184 tttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
|| |||||||| || ||||| |||||||| || |||||||| || ||| |||| |||||
Sbjct: 301 attagtctgtggtaactgtgtagtctggaagggagctccaactacaccattgataactat 360
Query: 244 tgcaatgacaaa 255
||| || |||||
Sbjct: 361 tgctattacaaa 372
>gb|CX530692.1|CX530692 s13dNF58F03MJ028_247400 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 508
Score = 119 bits (60), Expect = 7e-025
Identities = 204/252 (80%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || || ||||||||||||||||| |||||||| || ||| | |||||||| ||
Sbjct: 112 ggaaattattgatatgtgtgattatgctgttgggctaagccgacaattgaatggatcaat 171
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
||| ||||| ||||| ||| | ||||||||| | ||||| ||||| || || ||| | ||
Sbjct: 172 tatcccatcggaacgtccagatcatatgatgtttgaggtatggaacccactaggaatagt 231
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
|| || || || || || || || || |||||||| || || |||||||||||||||||
Sbjct: 232 tggcgtaatcactgctttcaactttccatgtgctgttctaggatggaatgcttgcattgc 291
Query: 184 tttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
|| |||||||| || ||||| |||||||| || |||||||| || ||| |||| |||||
Sbjct: 292 attagtctgtggtaactgtgtagtctggaagggagctccaactacaccattgataactat 351
Query: 244 tgcaatgacaaa 255
||| || |||||
Sbjct: 352 tgctattacaaa 363
>gb|CX535337.1|CX535337 s13dNF39H06MJ060_388843 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 526
Score = 119 bits (60), Expect = 7e-025
Identities = 204/252 (80%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || || ||||||||||||||||| |||||||| || ||| | |||||||| ||
Sbjct: 44 ggaaattattgatatgtgtgattatgctgttgggctaagccgacaattgaatggatcaat 103
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
||| ||||| ||||| ||| | ||||||||| | ||||| ||||| || || ||| | ||
Sbjct: 104 tatcccatcggaacgtccagatcatatgatgtttgaggtatggaacccactaggaatagt 163
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
|| || || || || || || || || |||||||| || || |||||||||||||||||
Sbjct: 164 tggcgtaatcactgctttcaactttccatgtgctgttctaggatggaatgcttgcattgc 223
Query: 184 tttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
|| |||||||| || ||||| |||||||| || |||||||| || ||| |||| |||||
Sbjct: 224 attagtctgtggtaactgtgtagtctggaagggagctccaactacaccattgataactat 283
Query: 244 tgcaatgacaaa 255
||| || |||||
Sbjct: 284 tgctattacaaa 295
>gb|CX538715.1|CX538715 s13dNF0IF09GS075_460682 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 573
Score = 119 bits (60), Expect = 7e-025
Identities = 204/252 (80%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || || ||||||||||||||||| |||||||| || ||| | |||||||| ||
Sbjct: 39 ggaaattattgatatgtgtgattatgctgttgggctaagccgacaattgaatggatcaat 98
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
||| ||||| ||||| ||| | ||||||||| | ||||| ||||| || || ||| | ||
Sbjct: 99 tatcccatcggaacgtccagatcatatgatgtttgaggtatggaacccactaggaatagt 158
Query: 124 gggtgttataacggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgc 183
|| || || || || || || || || |||||||| || || |||||||||||||||||
Sbjct: 159 tggcgtaatcactgctttcaactttccatgtgctgttctaggatggaatgcttgcattgc 218
Query: 184 tttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
|| |||||||| || ||||| |||||||| || |||||||| || ||| |||| |||||
Sbjct: 219 attagtctgtggtaactgtgtagtctggaagggagctccaactacaccattgataactat 278
Query: 244 tgcaatgacaaa 255
||| || |||||
Sbjct: 279 tgctattacaaa 290
>gb|BF647183.1|BF647183 NF040A08EC1F1056 Elicited cell culture Medicago truncatula cDNA
clone NF040A08EC 5', mRNA sequence
Length = 627
Score = 81.8 bits (41), Expect = 2e-013
Identities = 177/222 (79%), Gaps = 2/222 (0%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || || ||||||||||||||||| |||||||| || ||| | |||||||| ||
Sbjct: 397 ggaaattattgatatgtgtgattatgctgttgggctaagccgacaattgaatggatcaat 456
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgt 123
||| ||||| ||||| ||| | ||||||||| | ||||| ||||| || || || | ||
Sbjct: 457 tatcccatcggaacgtccagatcatatgatgtttgaggtatggaacccactangaatagt 516
Query: 124 gggtgttataacggcattt--aatttcccttgtgctgtgcttggttggaatgcttgcatt 181
|| || || || || ||| | ||| || |||||||| || || |||||||||||||||
Sbjct: 517 tggcgtaatcactgcttttcaacttttccatgtgctgttctaggatggaatgcttgcatt 576
Query: 182 gctttggtctgtggaaattgtgtcgtctggaaaggtgctcca 223
|| || |||||||| || ||||| ||||||| || ||||||
Sbjct: 577 gcattagtctgtggtaactgtgtantctggaagggagctcca 618
>gb|BG450610.1|BG450610 NF036E05DT1F1039 Drought Medicago truncatula cDNA clone NF036E05DT
5', mRNA sequence
Length = 619
Score = 73.8 bits (37), Expect = 4e-011
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 4 ggaaatcatcgacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccat 63
|||||| || || ||||||||||||||||| |||||||| || ||| | |||||||| ||
Sbjct: 378 ggaaattattgatatgtgtgattatgctgttgggctaagccgacaattgaatggatcaat 437
Query: 64 tataccatctgaacgaccaaaccatatgatgatggaggtgtggaa 108
||| ||||| ||||| ||| | ||||||||| | ||||| |||||
Sbjct: 438 tatcccatcggaacgtccagatcatatgatgtttgaggtatggaa 482
>emb|CR954185.1| Medicago truncatula chromosome 5 clone mth4-20m5, WORKING DRAFT
SEQUENCE
Length = 210937
Score = 44.1 bits (22), Expect = 0.033
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 687 cttcaaaagagaactttttgaa 708
||||||||||||||||||||||
Sbjct: 54998 cttcaaaagagaactttttgaa 54977
>gb|AI974610.1|AI974610 T113060e KV2 Medicago truncatula cDNA clone pKV2-1C14, mRNA
sequence
Length = 200
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 452 agcggaaacaatgccatcattgttatggatgatgcagatat 492
||||| |||||||| || || || |||||||||||||||||
Sbjct: 92 agcggtaacaatgcaattatagtcatggatgatgcagatat 132
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 486,031
Number of Sequences: 392609
Number of extensions: 486031
Number of successful extensions: 35468
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35438
Number of HSP's gapped (non-prelim): 30
length of query: 1462
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1442
effective length of database: 433,880,813
effective search space: 625656132346
effective search space used: 625656132346
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)