BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805013.2.1
(712 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR940307.5| M.truncatula DNA sequence from clone MTH2-2... 68 1e-009
emb|CR478966.1| mth2-188J6FM1 BAC end, cultivar Jemalong A1... 60 3e-007
emb|CR481263.1| mth2-193J5FM1 BAC end, cultivar Jemalong A1... 60 3e-007
gb|AW432144.1|AW432144 T210098e KV0 Medicago truncatula cDN... 46 0.004
gb|AL377886.1|AL377886 MtBB34E11R1 MtBB Medicago truncatula... 46 0.004
gb|AL380838.1|AL380838 MtBB54H05R1 MtBB Medicago truncatula... 46 0.004
gb|BE943190.1|BE943190 EST422769 MGHG Medicago truncatula c... 46 0.004
gb|BF637953.1|BF637953 NF043B04PL1F1031 Phosphate starved l... 46 0.004
gb|BE319820.2|BE319820 NF022C12RT1F1086 Developing root Med... 46 0.004
gb|BG647099.1|BG647099 EST508718 HOGA Medicago truncatula c... 46 0.004
gb|BQ147576.1|BQ147576 NF044B12FL1F1096 Developing flower M... 46 0.004
gb|AJ498373.1|AJ498373 AJ498373 MTPOSE Medicago truncatula ... 46 0.004
gb|CA858885.1|CA858885 EST636140 GLSD Medicago truncatula c... 46 0.004
gb|CA916826.1|CA916826 EST640973 GPOD Medicago truncatula c... 46 0.004
gb|CA990709.1|CA990709 EST644217 GESD Medicago truncatula c... 46 0.004
gb|AJ846981.1|AJ846981 AJ846981 MtSTW Medicago truncatula c... 46 0.004
gb|CX534843.1|CX534843 s13dNF19E08MJ055_336089 Methyl Jasmo... 46 0.004
>emb|CR940307.5| M.truncatula DNA sequence from clone MTH2-21G21 on chromosome 3,
complete sequence
Length = 115223
Score = 67.9 bits (34), Expect = 1e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 148 ggcaagctccgctacgccaacaactccaactacaagaacgacaccatgatccgcaaggag 207
|||||||| || ||||||||||||||||| ||||| ||||||||||| || || ||||||
Sbjct: 47596 ggcaagcttcgttacgccaacaactccaattacaaaaacgacaccatcattcgtaaggag 47655
Query: 208 gt 209
||
Sbjct: 47656 gt 47657
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 475 cttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 49410 cttcacttcaagatcaagcc 49429
>emb|CR478966.1| mth2-188J6FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 592
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 160 tacgccaacaactccaactacaagaacgacaccatgatccgcaaggaggt 209
||||||||||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 9 tacgccaacaactccaattacaaaaacgacaccatcattcgtaaggaggt 58
>emb|CR481263.1| mth2-193J5FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 615
Score = 60.0 bits (30), Expect = 3e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 160 tacgccaacaactccaactacaagaacgacaccatgatccgcaaggaggt 209
||||||||||||||||| ||||| ||||||||||| || || ||||||||
Sbjct: 9 tacgccaacaactccaattacaaaaacgacaccatcattcgtaaggaggt 58
>gb|AW432144.1|AW432144 T210098e KV0 Medicago truncatula cDNA clone pKV0-2E18, mRNA
sequence
Length = 517
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 402 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 461
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 462 tcacttcacttcaagatcaagcc 484
>gb|AL377886.1|AL377886 MtBB34E11R1 MtBB Medicago truncatula cDNA clone MtBB34E11 T7, mRNA
sequence
Length = 446
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 167 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 226
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 227 tcacttcacttcaagatcaagcc 249
>gb|AL380838.1|AL380838 MtBB54H05R1 MtBB Medicago truncatula cDNA clone MtBB54H05 T7, mRNA
sequence
Length = 416
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 3 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 62
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 63 tcacttcacttcaagatcaagcc 85
>gb|BE943190.1|BE943190 EST422769 MGHG Medicago truncatula cDNA clone pMGHG-15E3, mRNA
sequence
Length = 465
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 362 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 421
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 422 tcacttcacttcaagatcaagcc 444
>gb|BF637953.1|BF637953 NF043B04PL1F1031 Phosphate starved leaf Medicago truncatula cDNA
clone NF043B04PL 5', mRNA sequence
Length = 674
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 416 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 475
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 476 tcacttcacttcaagatcaagcc 498
>gb|BE319820.2|BE319820 NF022C12RT1F1086 Developing root Medicago truncatula cDNA clone
NF022C12RT 5', mRNA sequence
Length = 551
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 384 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 443
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 444 tcacttcacttcaagatcaagcc 466
>gb|BG647099.1|BG647099 EST508718 HOGA Medicago truncatula cDNA clone pHOGA-15N23 5' end,
mRNA sequence
Length = 672
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 411 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 470
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 471 tcacttcacttcaagatcaagcc 493
>gb|BQ147576.1|BQ147576 NF044B12FL1F1096 Developing flower Medicago truncatula cDNA clone
NF044B12FL 5', mRNA sequence
Length = 625
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 378 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 437
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 438 tcacttcacttcaagatcaagcc 460
>gb|AJ498373.1|AJ498373 AJ498373 MTPOSE Medicago truncatula cDNA clone mt--acc955204a12,
mRNA sequence
Length = 622
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 424 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 483
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 484 tcacttcacttcaagatcaagcc 506
>gb|CA858885.1|CA858885 EST636140 GLSD Medicago truncatula cDNA clone pGLSD-39G18, mRNA
sequence
Length = 665
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 384 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 443
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 444 tcacttcacttcaagatcaagcc 466
>gb|CA916826.1|CA916826 EST640973 GPOD Medicago truncatula cDNA clone GPOD-34E7, mRNA
sequence
Length = 548
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 287 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 346
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 347 tcacttcacttcaagatcaagcc 369
>gb|CA990709.1|CA990709 EST644217 GESD Medicago truncatula cDNA clone GESD-29J15, mRNA
sequence
Length = 641
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 382 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 441
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 442 tcacttcacttcaagatcaagcc 464
>gb|AJ846981.1|AJ846981 AJ846981 MtSTW Medicago truncatula cDNA clone MtTW02M20N1, mRNA
sequence
Length = 642
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 256 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 197
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 196 tcacttcacttcaagatcaagcc 174
>gb|CX534843.1|CX534843 s13dNF19E08MJ055_336089 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 588
Score = 46.1 bits (23), Expect = 0.004
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 412 ggcctccggatcttctactaccttgtccaggatctgaagtgtttcgtgttctcgctcatc 471
||||| || ||||| ||||| ||||| |||||| ||||||| || || ||||| || ||
Sbjct: 418 ggccttcgcatcttttactatcttgttcaggatttgaagtgctttgtcttctctcttatt 477
Query: 472 aaccttcacttcaagatcaagcc 494
||||||||||||||||||||
Sbjct: 478 tcacttcacttcaagatcaagcc 500
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 126,234
Number of Sequences: 392609
Number of extensions: 126234
Number of successful extensions: 9368
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9346
Number of HSP's gapped (non-prelim): 22
length of query: 712
length of database: 441,732,993
effective HSP length: 19
effective length of query: 693
effective length of database: 434,273,422
effective search space: 300951481446
effective search space used: 300951481446
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)