BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.4
(667 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW773746.1|AW773746 EST332732 KV3 Medicago truncatula cD... 62 6e-008
gb|AW776296.1|AW776296 EST335361 DSIL Medicago truncatula c... 62 6e-008
gb|BE320392.2|BE320392 NF030D08RT1F1062 Developing root Med... 62 6e-008
gb|BG453782.1|BG453782 NF094A06LF1F1038 Developing leaf Med... 62 6e-008
gb|DW018938.1|DW018938 EST1227899 MTY Medicago truncatula c... 62 6e-008
gb|AC149572.14| Medicago truncatula clone mth2-116e22, comp... 62 6e-008
emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-7... 62 6e-008
gb|AW329632.2|AW329632 N200892e rootphos(-) Medicago trunca... 60 3e-007
gb|AL365795.1|AL365795 MtBA02D11R2 MtBA Medicago truncatula... 60 3e-007
gb|AL385965.1|AL385965 MtBC31G07R1 MtBC Medicago truncatula... 60 3e-007
gb|BF634847.1|BF634847 NF075E01DT1F1005 Drought Medicago tr... 60 3e-007
gb|AW692037.2|AW692037 NF046H05ST1F1000 Developing stem Med... 60 3e-007
gb|BI311476.1|BI311476 EST5313226 GESD Medicago truncatula ... 60 3e-007
gb|BI312324.1|BI312324 EST5314074 GESD Medicago truncatula ... 60 3e-007
gb|CA989884.1|CA989884 EST643392 GESD Medicago truncatula c... 60 3e-007
gb|AC150446.8| Medicago truncatula clone mth2-101n14, compl... 60 3e-007
gb|AC140546.11| Medicago truncatula clone mth2-35l19, compl... 60 3e-007
gb|AW773919.1|AW773919 EST332905 KV3 Medicago truncatula cD... 58 1e-006
gb|BF638502.1|BF638502 NF060B02PL1F1015 Phosphate starved l... 58 1e-006
gb|BI309501.1|BI309501 EST530911 GPOD Medicago truncatula c... 58 1e-006
gb|BI311546.1|BI311546 EST5313296 GESD Medicago truncatula ... 58 1e-006
gb|AJ500002.1|AJ500002 AJ500002 MTGIM Medicago truncatula c... 58 1e-006
gb|AJ499635.1|AJ499635 AJ499635 MTGIM Medicago truncatula c... 58 1e-006
gb|DW016544.1|DW016544 EST1225505 MTY Medicago truncatula c... 58 1e-006
gb|AC131248.14| Medicago truncatula clone mth2-28n22, compl... 58 1e-006
gb|AW736522.1|AW736522 EST332536 KV3 Medicago truncatula cD... 56 4e-006
gb|CX542093.1|CX542093 s13dNF85A12GS097_467494 Germinating ... 54 2e-005
gb|AL384657.1|AL384657 MtBC23F02R1 MtBC Medicago truncatula... 52 6e-005
gb|BG648585.1|BG648585 EST510204 HOGA Medicago truncatula c... 52 6e-005
gb|CA918393.1|CA918393 EST642540 GESD Medicago truncatula c... 52 6e-005
gb|CA918394.1|CA918394 EST642541 GESD Medicago truncatula c... 52 6e-005
gb|CA919282.1|CA919282 EST637000 MTUS Medicago truncatula c... 52 6e-005
emb|CR337706.1| mte1-69I8FM1 BAC end, cultivar Jemalong A17... 46 0.004
gb|CX541230.1|CX541230 s13dNF78H10GS092_465756 Germinating ... 46 0.004
gb|AC148821.1| Medicago truncatula chromosome 2 clone mth2-... 46 0.004
gb|AC137522.10| Medicago truncatula clone mth2-9h8, complet... 46 0.004
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 44 0.015
gb|AL368411.1|AL368411 MtBA24C11F1 MtBA Medicago truncatula... 42 0.059
gb|BF635224.1|BF635224 NF061H04DT1F1043 Drought Medicago tr... 42 0.059
gb|BI309194.1|BI309194 EST530604 GPOD Medicago truncatula c... 42 0.059
gb|CA919650.1|CA919650 EST637368 MTUS Medicago truncatula c... 42 0.059
gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula c... 42 0.059
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 40 0.23
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 40 0.23
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 40 0.23
gb|AJ500539.1|AJ500539 AJ500539 MTGIM Medicago truncatula c... 40 0.23
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 40 0.23
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 40 0.23
gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula c... 40 0.23
gb|AJ499925.1|AJ499925 AJ499925 MTGIM Medicago truncatula c... 40 0.23
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 40 0.23
>gb|AW773746.1|AW773746 EST332732 KV3 Medicago truncatula cDNA clone pKV3-15B20, mRNA
sequence
Length = 538
Score = 61.9 bits (31), Expect = 6e-008
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 108 tcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtat 167
|||||||| || ||||| || || || |||||||||||||||||||| ||||||| ||
Sbjct: 531 tcatggggaccactctttggtaaacttttctttgcattttgggtgatcatccatctctac 472
Query: 168 cccttcctcaaaggt 182
|||||||| ||||||
Sbjct: 471 cccttccttaaaggt 457
>gb|AW776296.1|AW776296 EST335361 DSIL Medicago truncatula cDNA clone pDSIL-7K4, mRNA
sequence
Length = 511
Score = 61.9 bits (31), Expect = 6e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 108 tcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtat 167
|||||||| || ||||| || || || |||||||||||||||||||| ||||||| ||
Sbjct: 94 tcatggggaccactctttggtaaacttttctttgcattttgggtgatcatccatctctac 153
Query: 168 cccttcctcaaaggt 182
|||||||| ||||||
Sbjct: 154 cccttccttaaaggt 168
>gb|BE320392.2|BE320392 NF030D08RT1F1062 Developing root Medicago truncatula cDNA clone
NF030D08RT 5', mRNA sequence
Length = 342
Score = 61.9 bits (31), Expect = 6e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 108 tcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtat 167
|||||||| || ||||| || || || |||||||||||||||||||| ||||||| ||
Sbjct: 250 tcatggggaccactctttggtaaacttttctttgcattttgggtgatcatccatctctac 309
Query: 168 cccttcctcaaaggt 182
|||||||| ||||||
Sbjct: 310 cccttccttaaaggt 324
>gb|BG453782.1|BG453782 NF094A06LF1F1038 Developing leaf Medicago truncatula cDNA clone
NF094A06LF 5', mRNA sequence
Length = 639
Score = 61.9 bits (31), Expect = 6e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 108 tcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtat 167
|||||||| || ||||| || || || |||||||||||||||||||| ||||||| ||
Sbjct: 81 tcatggggaccactctttggtaaacttttctttgcattttgggtgatcatccatctctac 140
Query: 168 cccttcctcaaaggt 182
|||||||| ||||||
Sbjct: 141 cccttccttaaaggt 155
>gb|DW018938.1|DW018938 EST1227899 MTY Medicago truncatula cDNA clone MTYBC76, mRNA
sequence
Length = 795
Score = 61.9 bits (31), Expect = 6e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 108 tcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtat 167
|||||||| || ||||| || || || |||||||||||||||||||| ||||||| ||
Sbjct: 649 tcatggggaccactctttggtaaacttttctttgcattttgggtgatcatccatctctac 708
Query: 168 cccttcctcaaaggt 182
|||||||| ||||||
Sbjct: 709 cccttccttaaaggt 723
>gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete sequence
Length = 120017
Score = 61.9 bits (31), Expect = 6e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 108 tcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtat 167
|||||||| || ||||| || || || |||||||||||||||||||| ||||||| ||
Sbjct: 93625 tcatggggaccactctttggtaaacttttctttgcattttgggtgatcatccatctctac 93684
Query: 168 cccttcctcaaaggt 182
|||||||| ||||||
Sbjct: 93685 cccttccttaaaggt 93699
>emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-76H16 on chromosome 3, complete
sequence
Length = 133910
Score = 61.9 bits (31), Expect = 6e-008
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 108 tcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtat 167
|||||||| || ||||| || || || |||||||||||||||||||| ||||||| ||
Sbjct: 129603 tcatggggaccactctttggtaaacttttctttgcattttgggtgatcatccatctctac 129662
Query: 168 cccttcctcaaaggt 182
|||||||| ||||||
Sbjct: 129663 cccttccttaaaggt 129677
>gb|AW329632.2|AW329632 N200892e rootphos(-) Medicago truncatula cDNA clone MHRP-22D5, mRNA
sequence
Length = 495
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 132 ctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
||||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 246 ctcttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 299
>gb|AL365795.1|AL365795 MtBA02D11R2 MtBA Medicago truncatula cDNA clone MtBA02D11 T7, mRNA
sequence
Length = 557
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 132 ctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
||||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 108 ctcttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 161
>gb|AL385965.1|AL385965 MtBC31G07R1 MtBC Medicago truncatula cDNA clone MtBC31G07 T7, mRNA
sequence
Length = 477
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 132 ctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
||||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 20 ctcttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 73
>gb|BF634847.1|BF634847 NF075E01DT1F1005 Drought Medicago truncatula cDNA clone NF075E01DT
5', mRNA sequence
Length = 680
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 132 ctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
||||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 176 ctcttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 229
>gb|AW692037.2|AW692037 NF046H05ST1F1000 Developing stem Medicago truncatula cDNA clone
NF046H05ST 5', mRNA sequence
Length = 592
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 132 ctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
||||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 354 ctcttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 407
>gb|BI311476.1|BI311476 EST5313226 GESD Medicago truncatula cDNA clone pGESD13A7 5' end,
mRNA sequence
Length = 842
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 132 ctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
||||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 658 ctcttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 711
>gb|BI312324.1|BI312324 EST5314074 GESD Medicago truncatula cDNA clone pGESD17P11 5' end,
mRNA sequence
Length = 711
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 132 ctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
||||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 513 ctcttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 566
>gb|CA989884.1|CA989884 EST643392 GESD Medicago truncatula cDNA clone GESD-21H19, mRNA
sequence
Length = 842
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 132 ctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
||||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 448 ctcttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 501
>gb|AC150446.8| Medicago truncatula clone mth2-101n14, complete sequence
Length = 109162
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 132 ctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
||||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 107028 ctcttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 107081
>gb|AC140546.11| Medicago truncatula clone mth2-35l19, complete sequence
Length = 106963
Score = 60.0 bits (30), Expect = 3e-007
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 132 ctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
||||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 31241 ctcttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 31294
>gb|AW773919.1|AW773919 EST332905 KV3 Medicago truncatula cDNA clone pKV3-16F23, mRNA
sequence
Length = 525
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 182
|||||||| ||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 374 gggaagctattctttgcattttgggtcattgttcatttatatcctttccttaaaggt 318
>gb|BF638502.1|BF638502 NF060B02PL1F1015 Phosphate starved leaf Medicago truncatula cDNA
clone NF060B02PL 5', mRNA sequence
Length = 480
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 182
|||||||| ||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 194 gggaagctattctttgcattttgggtcattgttcatttatatcctttccttaaaggt 250
>gb|BI309501.1|BI309501 EST530911 GPOD Medicago truncatula cDNA clone pGPOD-13G5 5' end,
mRNA sequence
Length = 691
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 182
|||||||| ||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 430 gggaagctattctttgcattttgggtcattgttcatttatatcctttccttaaaggt 374
>gb|BI311546.1|BI311546 EST5313296 GESD Medicago truncatula cDNA clone pGESD13M17 5' end,
mRNA sequence
Length = 811
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 182
|||||||| ||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 450 gggaagctattctttgcattttgggtcattgttcatttatatcctttccttaaaggt 506
>gb|AJ500002.1|AJ500002 AJ500002 MTGIM Medicago truncatula cDNA clone mtgmacc120011c12,
mRNA sequence
Length = 596
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 182
|||||||| ||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 387 gggaagctattctttgcattttgggtcattgttcatttatatcctttccttaaaggt 331
>gb|AJ499635.1|AJ499635 AJ499635 MTGIM Medicago truncatula cDNA clone mtgmacc120006f01,
mRNA sequence
Length = 572
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 182
|||||||| ||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 383 gggaagctattctttgcattttgggtcattgttcatttatatcctttccttaaaggt 327
>gb|DW016544.1|DW016544 EST1225505 MTY Medicago truncatula cDNA clone MTYAI54, mRNA
sequence
Length = 787
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 182
|||||||| ||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 519 gggaagctattctttgcattttgggtcattgttcatttatatcctttccttaaaggt 575
>gb|AC131248.14| Medicago truncatula clone mth2-28n22, complete sequence
Length = 136333
Score = 58.0 bits (29), Expect = 1e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 182
|||||||| ||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 99778 gggaagctattctttgcattttgggtcattgttcatttatatcctttccttaaaggt 99722
>gb|AW736522.1|AW736522 EST332536 KV3 Medicago truncatula cDNA clone pKV3-13H14, mRNA
sequence
Length = 551
Score = 56.0 bits (28), Expect = 4e-006
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 108 tcatggggccccctcttcgggaagctcttctttgcattttgggtgattgtccatctgtat 167
|||||||| || ||||| || || || |||||||||||||||||||| ||||||| ||
Sbjct: 448 tcatggggaccactctttggtaaacttttctttgcattttgggtgatcatccatctctac 389
Query: 168 cccttcct 175
||||||||
Sbjct: 388 cccttcct 381
>gb|CX542093.1|CX542093 s13dNF85A12GS097_467494 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 617
Score = 54.0 bits (27), Expect = 2e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 132 ctcttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 185
||||||||| | || ||||||||||||||||| ||||| ||||| | |||||||
Sbjct: 432 ctcttcttttccttctgggtgattgtccatctatatccattccttanaggtttg 485
>gb|AL384657.1|AL384657 MtBC23F02R1 MtBC Medicago truncatula cDNA clone MtBC23F02 T7, mRNA
sequence
Length = 544
Score = 52.0 bits (26), Expect = 6e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||||| ||| ||| | |||||||| || ||||| || || || ||||||||||
Sbjct: 78 atgctatcaatagtggttaccaatcatggggtccactctttggtaaacttttctttgcat 137
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggt 182
||||||| || || ||||| || || ||||| ||||||
Sbjct: 138 tttgggttatcgttcatctctaccctttccttaaaggt 175
>gb|BG648585.1|BG648585 EST510204 HOGA Medicago truncatula cDNA clone pHOGA-23O7 5' end,
mRNA sequence
Length = 788
Score = 52.0 bits (26), Expect = 6e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||||| ||| ||| | |||||||| || ||||| || || || ||||||||||
Sbjct: 461 atgctatcaatagtggttaccaatcatggggtccactctttggtaaacttttctttgcat 520
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggt 182
||||||| || || ||||| || || ||||| ||||||
Sbjct: 521 tttgggttatcgttcatctctaccctttccttaaaggt 558
>gb|CA918393.1|CA918393 EST642540 GESD Medicago truncatula cDNA clone GESD-21C15, mRNA
sequence
Length = 807
Score = 52.0 bits (26), Expect = 6e-005
Identities = 80/98 (81%)
Strand = Plus / Plus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||||| ||| ||| | |||||||| || ||||| || || || ||||||||||
Sbjct: 672 atgctatcaatagtggttaccaatcatggggtccactctttggtaaacttttctttgcat 731
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggt 182
||||||| || || ||||| || || ||||| ||||||
Sbjct: 732 tttgggttatcgttcatctctaccctttccttaaaggt 769
>gb|CA918394.1|CA918394 EST642541 GESD Medicago truncatula cDNA clone GESD-21C15, mRNA
sequence
Length = 830
Score = 52.0 bits (26), Expect = 6e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||||| ||| ||| | |||||||| || ||||| || || || ||||||||||
Sbjct: 424 atgctatcaatagtggttaccaatcatggggtccactctttggtaaacttttctttgcat 365
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggt 182
||||||| || || ||||| || || ||||| ||||||
Sbjct: 364 tttgggttatcgttcatctctaccctttccttaaaggt 327
>gb|CA919282.1|CA919282 EST637000 MTUS Medicago truncatula cDNA clone MTUS-11D5, mRNA
sequence
Length = 735
Score = 52.0 bits (26), Expect = 6e-005
Identities = 80/98 (81%)
Strand = Plus / Minus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||||| ||| ||| | |||||||| || ||||| || || || ||||||||||
Sbjct: 403 atgctatcaatagtggttaccaatcatggggtccactctttggtaaacttttctttgcat 344
Query: 145 tttgggtgattgtccatctgtatcccttcctcaaaggt 182
||||||| || || ||||| || || ||||| ||||||
Sbjct: 343 tttgggttatcgttcatctctaccctttccttaaaggt 306
>emb|CR337706.1| mte1-69I8FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 629
Score = 46.1 bits (23), Expect = 0.004
Identities = 95/119 (79%)
Strand = Plus / Plus
Query: 74 tggtgtttccaatgcaatcaataatggatacgagtcatggggccccctcttcgggaagct 133
|||||| ||| |||| ||||||||||| || || |||||||| || || ||||| | |
Sbjct: 100 tggtgtctccgatgcgatcaataatggttatgactcatggggacctctgttcggtagatt 159
Query: 134 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttggga 192
|||||||| ||||||| || | ||||| ||||| |||||||| |||||| ||||||
Sbjct: 160 attctttgccctttgggtcatcatacatctttatccattcctcaagggtttgcttggga 218
>gb|CX541230.1|CX541230 s13dNF78H10GS092_465756 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 642
Score = 46.1 bits (23), Expect = 0.004
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 85 atgcaatcaataatggatacgagtcatggggccccctcttcgggaagctcttctttgcat 144
|||| ||||||| ||| ||| | |||||||| || ||||| || || || ||||||||||
Sbjct: 471 atgctatcaatagtggttaccaatcatggggtccactctttggtaaacttttctttgcat 530
Query: 145 tttgggt 151
|||||||
Sbjct: 531 tttgggt 537
>gb|AC148821.1| Medicago truncatula chromosome 2 clone mth2-80k8, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 122271
Score = 46.1 bits (23), Expect = 0.004
Identities = 95/119 (79%)
Strand = Plus / Plus
Query: 74 tggtgtttccaatgcaatcaataatggatacgagtcatggggccccctcttcgggaagct 133
|||||| ||| |||| ||||||||||| || || |||||||| || || ||||| | |
Sbjct: 112172 tggtgtctccgatgcgatcaataatggttatgactcatggggacctctgttcggtagatt 112231
Query: 134 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttggga 192
|||||||| ||||||| || | ||||| ||||| |||||||| |||||| ||||||
Sbjct: 112232 attctttgccctttgggtcatcatacatctttatccattcctcaagggtttgcttggga 112290
>gb|AC137522.10| Medicago truncatula clone mth2-9h8, complete sequence
Length = 117716
Score = 46.1 bits (23), Expect = 0.004
Identities = 95/119 (79%)
Strand = Plus / Minus
Query: 74 tggtgtttccaatgcaatcaataatggatacgagtcatggggccccctcttcgggaagct 133
|||||| ||| |||| ||||||||||| || || |||||||| || || ||||| | |
Sbjct: 93531 tggtgtctccgatgcgatcaataatggttatgactcatggggacctctgttcggtagatt 93472
Query: 134 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttggga 192
|||||||| ||||||| || | ||||| ||||| |||||||| |||||| ||||||
Sbjct: 93471 attctttgccctttgggtcatcatacatctttatccattcctcaagggtttgcttggga 93413
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 646 gtgtacctgcccgggcggccgc 667
||||||||||||||||||||||
Sbjct: 26 gtgtacctgcccgggcggccgc 5
>gb|AL368411.1|AL368411 MtBA24C11F1 MtBA Medicago truncatula cDNA clone MtBA24C11 T3, mRNA
sequence
Length = 526
Score = 42.1 bits (21), Expect = 0.059
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 138 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 182
|||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 521 tttgcattttgggtcattgttcatttatatcctttccttaaaggt 477
>gb|BF635224.1|BF635224 NF061H04DT1F1043 Drought Medicago truncatula cDNA clone NF061H04DT
5', mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgattgtccatctgtatcccttcct 175
||||| ||||||||||||||| | ||||| ||||| |||||
Sbjct: 532 ttcttcgcattttgggtgatttttcatctttatccattcct 572
>gb|BI309194.1|BI309194 EST530604 GPOD Medicago truncatula cDNA clone pGPOD-11A9 5' end,
mRNA sequence
Length = 625
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgattgtccatctgtatcccttcct 175
||||| ||||||||||||||| | ||||| ||||| |||||
Sbjct: 404 ttcttcgcattttgggtgatttttcatctttatccattcct 444
>gb|CA919650.1|CA919650 EST637368 MTUS Medicago truncatula cDNA clone MTUS-16B10, mRNA
sequence
Length = 801
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 135 ttctttgcattttgggtgattgtccatctgtatcccttcct 175
||||| ||||||||||||||| | ||||| ||||| |||||
Sbjct: 434 ttcttcgcattttgggtgatttttcatctttatccattcct 394
>gb|AJ500111.1|AJ500111 AJ500111 MTGIM Medicago truncatula cDNA clone mtgmacc120012g12,
mRNA sequence
Length = 398
Score = 42.1 bits (21), Expect = 0.059
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 642 tcccgtgtacctgcccgggcggccg 666
||||| |||||||||||||||||||
Sbjct: 373 tcccgcgtacctgcccgggcggccg 397
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 648 gtacctgcccgggcggccgc 667
||||||||||||||||||||
Sbjct: 204 gtacctgcccgggcggccgc 223
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 648 gtacctgcccgggcggccgc 667
||||||||||||||||||||
Sbjct: 300 gtacctgcccgggcggccgc 319
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 648 gtacctgcccgggcggccgc 667
||||||||||||||||||||
Sbjct: 45 gtacctgcccgggcggccgc 26
>gb|AJ500539.1|AJ500539 AJ500539 MTGIM Medicago truncatula cDNA clone mtgmacc120017e07,
mRNA sequence
Length = 489
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 643 cccgtgtacctgcccgggcggccg 666
|||| |||||||||||||||||||
Sbjct: 27 cccgcgtacctgcccgggcggccg 4
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 648 gtacctgcccgggcggccgc 667
||||||||||||||||||||
Sbjct: 290 gtacctgcccgggcggccgc 309
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 648 gtacctgcccgggcggccgc 667
||||||||||||||||||||
Sbjct: 339 gtacctgcccgggcggccgc 320
>gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula cDNA clone mtgmacc120004f05,
mRNA sequence
Length = 128
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 643 cccgtgtacctgcccgggcggccg 666
|||| |||||||||||||||||||
Sbjct: 29 cccgcgtacctgcccgggcggccg 6
>gb|AJ499925.1|AJ499925 AJ499925 MTGIM Medicago truncatula cDNA clone mtgmacc120010c08,
mRNA sequence
Length = 463
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 647 tgtacctgcccgggcggccg 666
||||||||||||||||||||
Sbjct: 444 tgtacctgcccgggcggccg 463
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 155,773
Number of Sequences: 392609
Number of extensions: 155773
Number of successful extensions: 11916
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 50
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11836
Number of HSP's gapped (non-prelim): 83
length of query: 667
length of database: 441,732,993
effective HSP length: 19
effective length of query: 648
effective length of database: 434,273,422
effective search space: 281409177456
effective search space used: 281409177456
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)