BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.3
(671 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW329632.2|AW329632 N200892e rootphos(-) Medicago trunca... 56 4e-006
gb|AW773746.1|AW773746 EST332732 KV3 Medicago truncatula cD... 56 4e-006
gb|AW776296.1|AW776296 EST335361 DSIL Medicago truncatula c... 56 4e-006
gb|AL365795.1|AL365795 MtBA02D11R2 MtBA Medicago truncatula... 56 4e-006
gb|AL385965.1|AL385965 MtBC31G07R1 MtBC Medicago truncatula... 56 4e-006
gb|BF634847.1|BF634847 NF075E01DT1F1005 Drought Medicago tr... 56 4e-006
gb|BE320392.2|BE320392 NF030D08RT1F1062 Developing root Med... 56 4e-006
gb|AW692037.2|AW692037 NF046H05ST1F1000 Developing stem Med... 56 4e-006
gb|BG453782.1|BG453782 NF094A06LF1F1038 Developing leaf Med... 56 4e-006
gb|BI311476.1|BI311476 EST5313226 GESD Medicago truncatula ... 56 4e-006
gb|BI312324.1|BI312324 EST5314074 GESD Medicago truncatula ... 56 4e-006
gb|CA989884.1|CA989884 EST643392 GESD Medicago truncatula c... 56 4e-006
gb|DW018938.1|DW018938 EST1227899 MTY Medicago truncatula c... 56 4e-006
gb|AC149572.14| Medicago truncatula clone mth2-116e22, comp... 56 4e-006
gb|AC150446.8| Medicago truncatula clone mth2-101n14, compl... 56 4e-006
emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-7... 56 4e-006
gb|AC140546.11| Medicago truncatula clone mth2-35l19, compl... 56 4e-006
gb|AW736522.1|AW736522 EST332536 KV3 Medicago truncatula cD... 50 2e-004
gb|CX542093.1|CX542093 s13dNF85A12GS097_467494 Germinating ... 50 2e-004
gb|AW773919.1|AW773919 EST332905 KV3 Medicago truncatula cD... 48 0.001
gb|BF638502.1|BF638502 NF060B02PL1F1015 Phosphate starved l... 48 0.001
gb|BI309501.1|BI309501 EST530911 GPOD Medicago truncatula c... 48 0.001
gb|BI311546.1|BI311546 EST5313296 GESD Medicago truncatula ... 48 0.001
gb|AJ500002.1|AJ500002 AJ500002 MTGIM Medicago truncatula c... 48 0.001
gb|AJ499635.1|AJ499635 AJ499635 MTGIM Medicago truncatula c... 48 0.001
gb|DW016544.1|DW016544 EST1225505 MTY Medicago truncatula c... 48 0.001
gb|AC131248.14| Medicago truncatula clone mth2-28n22, compl... 48 0.001
gb|AL368411.1|AL368411 MtBA24C11F1 MtBA Medicago truncatula... 42 0.059
gb|BF635224.1|BF635224 NF061H04DT1F1043 Drought Medicago tr... 42 0.059
gb|BI309194.1|BI309194 EST530604 GPOD Medicago truncatula c... 42 0.059
gb|CA919650.1|CA919650 EST637368 MTUS Medicago truncatula c... 42 0.059
gb|AL384657.1|AL384657 MtBC23F02R1 MtBC Medicago truncatula... 40 0.23
gb|BG648585.1|BG648585 EST510204 HOGA Medicago truncatula c... 40 0.23
gb|CA918393.1|CA918393 EST642540 GESD Medicago truncatula c... 40 0.23
gb|CA918394.1|CA918394 EST642541 GESD Medicago truncatula c... 40 0.23
gb|CA919282.1|CA919282 EST637000 MTUS Medicago truncatula c... 40 0.23
>gb|AW329632.2|AW329632 N200892e rootphos(-) Medicago truncatula cDNA clone MHRP-22D5, mRNA
sequence
Length = 495
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 248 cttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 299
>gb|AW773746.1|AW773746 EST332732 KV3 Medicago truncatula cDNA clone pKV3-15B20, mRNA
sequence
Length = 538
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
|||||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct: 504 ttctttgcattttgggtgatcatccatctctaccccttccttaaaggt 457
>gb|AW776296.1|AW776296 EST335361 DSIL Medicago truncatula cDNA clone pDSIL-7K4, mRNA
sequence
Length = 511
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
|||||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct: 121 ttctttgcattttgggtgatcatccatctctaccccttccttaaaggt 168
>gb|AL365795.1|AL365795 MtBA02D11R2 MtBA Medicago truncatula cDNA clone MtBA02D11 T7, mRNA
sequence
Length = 557
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 110 cttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 161
>gb|AL385965.1|AL385965 MtBC31G07R1 MtBC Medicago truncatula cDNA clone MtBC31G07 T7,
mRNA sequence
Length = 477
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 22 cttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 73
>gb|BF634847.1|BF634847 NF075E01DT1F1005 Drought Medicago truncatula cDNA clone NF075E01DT
5', mRNA sequence
Length = 680
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 178 cttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 229
>gb|BE320392.2|BE320392 NF030D08RT1F1062 Developing root Medicago truncatula cDNA clone
NF030D08RT 5', mRNA sequence
Length = 342
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
|||||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct: 277 ttctttgcattttgggtgatcatccatctctaccccttccttaaaggt 324
>gb|AW692037.2|AW692037 NF046H05ST1F1000 Developing stem Medicago truncatula cDNA clone
NF046H05ST 5', mRNA sequence
Length = 592
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 356 cttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 407
>gb|BG453782.1|BG453782 NF094A06LF1F1038 Developing leaf Medicago truncatula cDNA clone
NF094A06LF 5', mRNA sequence
Length = 639
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
|||||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct: 108 ttctttgcattttgggtgatcatccatctctaccccttccttaaaggt 155
>gb|BI311476.1|BI311476 EST5313226 GESD Medicago truncatula cDNA clone pGESD13A7 5' end,
mRNA sequence
Length = 842
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 660 cttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 711
>gb|BI312324.1|BI312324 EST5314074 GESD Medicago truncatula cDNA clone pGESD17P11 5' end,
mRNA sequence
Length = 711
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 515 cttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 566
>gb|CA989884.1|CA989884 EST643392 GESD Medicago truncatula cDNA clone GESD-21H19, mRNA
sequence
Length = 842
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 450 cttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 501
>gb|DW018938.1|DW018938 EST1227899 MTY Medicago truncatula cDNA clone MTYBC76, mRNA
sequence
Length = 795
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
|||||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct: 676 ttctttgcattttgggtgatcatccatctctaccccttccttaaaggt 723
>gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete sequence
Length = 120017
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
|||||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct: 93652 ttctttgcattttgggtgatcatccatctctaccccttccttaaaggt 93699
>gb|AC150446.8| Medicago truncatula clone mth2-101n14, complete sequence
Length = 109162
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 107030 cttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 107081
>emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-76H16 on chromosome 3, complete
sequence
Length = 133910
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
|||||||||||||||||||| ||||||| || |||||||| ||||||
Sbjct: 129630 ttctttgcattttgggtgatcatccatctctaccccttccttaaaggt 129677
>gb|AC140546.11| Medicago truncatula clone mth2-35l19, complete sequence
Length = 106963
Score = 56.0 bits (28), Expect = 4e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||| | || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 31243 cttcttttccttctgggtgattgtccatctatatccattccttaaaggtttg 31294
>gb|AW736522.1|AW736522 EST332536 KV3 Medicago truncatula cDNA clone pKV3-13H14, mRNA
sequence
Length = 551
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcct 47
|||||||||||||||||||| ||||||| || ||||||||
Sbjct: 421 ttctttgcattttgggtgatcatccatctctaccccttcct 381
>gb|CX542093.1|CX542093 s13dNF85A12GS097_467494 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 617
Score = 50.1 bits (25), Expect = 2e-004
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 6 cttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||| | || ||||||||||||||||| ||||| ||||| | |||||||
Sbjct: 434 cttcttttccttctgggtgattgtccatctatatccattccttanaggtttg 485
>gb|AW773919.1|AW773919 EST332905 KV3 Medicago truncatula cDNA clone pKV3-16F23, mRNA
sequence
Length = 525
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 365 ttctttgcattttgggtcattgttcatttatatcctttccttaaaggt 318
>gb|BF638502.1|BF638502 NF060B02PL1F1015 Phosphate starved leaf Medicago truncatula cDNA
clone NF060B02PL 5', mRNA sequence
Length = 480
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 203 ttctttgcattttgggtcattgttcatttatatcctttccttaaaggt 250
>gb|BI309501.1|BI309501 EST530911 GPOD Medicago truncatula cDNA clone pGPOD-13G5 5' end,
mRNA sequence
Length = 691
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 421 ttctttgcattttgggtcattgttcatttatatcctttccttaaaggt 374
>gb|BI311546.1|BI311546 EST5313296 GESD Medicago truncatula cDNA clone pGESD13M17 5' end,
mRNA sequence
Length = 811
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 459 ttctttgcattttgggtcattgttcatttatatcctttccttaaaggt 506
>gb|AJ500002.1|AJ500002 AJ500002 MTGIM Medicago truncatula cDNA clone mtgmacc120011c12,
mRNA sequence
Length = 596
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 378 ttctttgcattttgggtcattgttcatttatatcctttccttaaaggt 331
>gb|AJ499635.1|AJ499635 AJ499635 MTGIM Medicago truncatula cDNA clone mtgmacc120006f01,
mRNA sequence
Length = 572
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 374 ttctttgcattttgggtcattgttcatttatatcctttccttaaaggt 327
>gb|DW016544.1|DW016544 EST1225505 MTY Medicago truncatula cDNA clone MTYAI54, mRNA
sequence
Length = 787
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 528 ttctttgcattttgggtcattgttcatttatatcctttccttaaaggt 575
>gb|AC131248.14| Medicago truncatula clone mth2-28n22, complete sequence
Length = 136333
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 99769 ttctttgcattttgggtcattgttcatttatatcctttccttaaaggt 99722
>gb|AL368411.1|AL368411 MtBA24C11F1 MtBA Medicago truncatula cDNA clone MtBA24C11 T3, mRNA
sequence
Length = 526
Score = 42.1 bits (21), Expect = 0.059
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
|||||||||||||| ||||| ||| | ||||| ||||| ||||||
Sbjct: 521 tttgcattttgggtcattgttcatttatatcctttccttaaaggt 477
>gb|BF635224.1|BF635224 NF061H04DT1F1043 Drought Medicago truncatula cDNA clone NF061H04DT
5', mRNA sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcct 47
||||| ||||||||||||||| | ||||| ||||| |||||
Sbjct: 532 ttcttcgcattttgggtgatttttcatctttatccattcct 572
>gb|BI309194.1|BI309194 EST530604 GPOD Medicago truncatula cDNA clone pGPOD-11A9 5' end,
mRNA sequence
Length = 625
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcct 47
||||| ||||||||||||||| | ||||| ||||| |||||
Sbjct: 404 ttcttcgcattttgggtgatttttcatctttatccattcct 444
>gb|CA919650.1|CA919650 EST637368 MTUS Medicago truncatula cDNA clone MTUS-16B10, mRNA
sequence
Length = 801
Score = 42.1 bits (21), Expect = 0.059
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcct 47
||||| ||||||||||||||| | ||||| ||||| |||||
Sbjct: 434 ttcttcgcattttgggtgatttttcatctttatccattcct 394
>gb|AL384657.1|AL384657 MtBC23F02R1 MtBC Medicago truncatula cDNA clone MtBC23F02 T7, mRNA
sequence
Length = 544
Score = 40.1 bits (20), Expect = 0.23
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||||||||| || || ||||| || || ||||| ||||||
Sbjct: 128 ttctttgcattttgggttatcgttcatctctaccctttccttaaaggt 175
>gb|BG648585.1|BG648585 EST510204 HOGA Medicago truncatula cDNA clone pHOGA-23O7 5' end,
mRNA sequence
Length = 788
Score = 40.1 bits (20), Expect = 0.23
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||||||||| || || ||||| || || ||||| ||||||
Sbjct: 511 ttctttgcattttgggttatcgttcatctctaccctttccttaaaggt 558
>gb|CA918393.1|CA918393 EST642540 GESD Medicago truncatula cDNA clone GESD-21C15, mRNA
sequence
Length = 807
Score = 40.1 bits (20), Expect = 0.23
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||||||||| || || ||||| || || ||||| ||||||
Sbjct: 722 ttctttgcattttgggttatcgttcatctctaccctttccttaaaggt 769
>gb|CA918394.1|CA918394 EST642541 GESD Medicago truncatula cDNA clone GESD-21C15, mRNA
sequence
Length = 830
Score = 40.1 bits (20), Expect = 0.23
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||||||||| || || ||||| || || ||||| ||||||
Sbjct: 374 ttctttgcattttgggttatcgttcatctctaccctttccttaaaggt 327
>gb|CA919282.1|CA919282 EST637000 MTUS Medicago truncatula cDNA clone MTUS-11D5, mRNA
sequence
Length = 735
Score = 40.1 bits (20), Expect = 0.23
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||||||||| || || ||||| || || ||||| ||||||
Sbjct: 353 ttctttgcattttgggttatcgttcatctctaccctttccttaaaggt 306
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 163,132
Number of Sequences: 392609
Number of extensions: 163132
Number of successful extensions: 12086
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12028
Number of HSP's gapped (non-prelim): 58
length of query: 671
length of database: 441,732,993
effective HSP length: 19
effective length of query: 652
effective length of database: 434,273,422
effective search space: 283146271144
effective search space used: 283146271144
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)