BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1804908.2.1
         (1118 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CG952158.1|CG952158  MBEGR78TR mth2 Medicago truncatula g...    52   1e-004
gb|CA921600.1|CA921600  EST639318 MTUS Medicago truncatula c...    52   1e-004
gb|AW561018.1|AW561018  EST316066 DSIR Medicago truncatula c...    48   0.002
gb|BF647601.1|BF647601  NF012A07EC1F1051 Elicited cell cultu...    48   0.002
gb|AW773684.1|AW773684  EST332670 KV3 Medicago truncatula cD...    44   0.025
emb|CR318176.1|  mte1-43M7FM1 BAC end, cultivar Jemalong A17...    40   0.39 
gb|AW257154.1|AW257154  EST305291 KV2 Medicago truncatula cD...    40   0.39 

>gb|CG952158.1|CG952158 MBEGR78TR mth2 Medicago truncatula genomic clone 52M12, DNA
           sequence
          Length = 871

 Score = 52.0 bits (26), Expect = 1e-004
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctcc 436
           ||||||||||||||| || || ||||| ||||||||||| |  |||||||||||
Sbjct: 206 ccactcgaagttgtcgagcaaggaccatgcaaagtaccccctaacatcagctcc 259



>gb|CA921600.1|CA921600 EST639318 MTUS Medicago truncatula cDNA clone MTUS-42C6, mRNA
           sequence
          Length = 730

 Score = 52.0 bits (26), Expect = 1e-004
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctcc 436
           ||||||||||||||| || || ||||| ||||||||||| |  |||||||||||
Sbjct: 480 ccactcgaagttgtcgagcaaggaccatgcaaagtaccccctaacatcagctcc 533



>gb|AW561018.1|AW561018 EST316066 DSIR Medicago truncatula cDNA clone pDSIR-31G21, mRNA
           sequence
          Length = 649

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                       
Query: 381 gcccactcgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtcc 440
           ||||| |||||||||||||| || ||||| |||||||| || |  ||||| ||||| |||
Sbjct: 173 gcccattcgaagttgtccagtaatgaccatgcaaagtatcctctcacatctgctccatcc 114

                               
Query: 441 ttgatcgcttgcgcaactga 460
           || || || || ||||||||
Sbjct: 113 ttcatagcctgagcaactga 94



>gb|BF647601.1|BF647601 NF012A07EC1F1051 Elicited cell culture Medicago truncatula cDNA
           clone NF012A07EC 5', mRNA sequence
          Length = 581

 Score = 48.1 bits (24), Expect = 0.002
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                       
Query: 381 gcccactcgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtcc 440
           ||||| |||||||| ||||| || ||||| |||||||  || |  ||||||||||| |||
Sbjct: 485 gcccattcgaagttatccagtaatgaccatgcaaagtgtcctctcacatcagctccatcc 426

                               
Query: 441 ttgatcgcttgcgcaactga 460
           || || || |||||||||||
Sbjct: 425 tttatagcctgcgcaactga 406



>gb|AW773684.1|AW773684 EST332670 KV3 Medicago truncatula cDNA clone pKV3-15F3, mRNA
           sequence
          Length = 615

 Score = 44.1 bits (22), Expect = 0.025
 Identities = 46/54 (85%)
 Strand = Plus / Plus

                                                                 
Query: 383 ccactcgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctcc 436
           ||||||||||||||| || |  ||||| ||||||||||| |  |||||||||||
Sbjct: 435 ccactcgaagttgtcgagcatggaccatgcaaagtaccccctaacatcagctcc 488



>emb|CR318176.1| mte1-43M7FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
           genomic survey sequence
          Length = 707

 Score = 40.1 bits (20), Expect = 0.39
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 935 aatttggtcttccacatttt 954
           ||||||||||||||||||||
Sbjct: 682 aatttggtcttccacatttt 701



>gb|AW257154.1|AW257154 EST305291 KV2 Medicago truncatula cDNA clone KV2-7I18, mRNA
           sequence
          Length = 755

 Score = 40.1 bits (20), Expect = 0.39
 Identities = 65/80 (81%)
 Strand = Plus / Plus

                                                                       
Query: 381 gcccactcgaagttgtccaggaacgaccacgcaaagtacccgcggacatcagctccgtcc 440
           ||||| |||||||| ||||| || ||||| |||||||  || |  ||||||||| | |||
Sbjct: 563 gcccattcgaagttatccagtaatgaccatgcaaagtgtcctctcacatcagcttcatcc 622

                               
Query: 441 ttgatcgcttgcgcaactga 460
           || || || |||||||||||
Sbjct: 623 tttatagcctgcgcaactga 642



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 351,658
Number of Sequences: 392609
Number of extensions: 351658
Number of successful extensions: 28539
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 28534
Number of HSP's gapped (non-prelim): 7
length of query: 1118
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1098
effective length of database: 433,880,813
effective search space: 476401132674
effective search space used: 476401132674
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)