BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738959.2.3
(725 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL388185.1|AL388185 MtBC47B04F1 MtBC Medicago truncatula... 62 7e-008
gb|AW692995.1|AW692995 NF058A10ST1F1000 Developing stem Med... 56 4e-006
gb|BF633105.1|BF633105 NF047D09DT1F1078 Drought Medicago tr... 56 4e-006
gb|AW775633.1|AW775633 EST334698 DSIL Medicago truncatula c... 48 0.001
gb|BI307966.1|BI307966 EST529376 GPOD Medicago truncatula c... 48 0.001
gb|BI308850.1|BI308850 EST530260 GPOD Medicago truncatula c... 48 0.001
gb|BI309704.1|BI309704 EST531114 GPOD Medicago truncatula c... 48 0.001
gb|BI309711.1|BI309711 EST531121 GPOD Medicago truncatula c... 48 0.001
gb|BI310827.1|BI310827 EST5312577 GESD Medicago truncatula ... 48 0.001
gb|BI311395.1|BI311395 EST5313145 GESD Medicago truncatula ... 48 0.001
gb|CA919336.1|CA919336 EST637054 MTUS Medicago truncatula c... 48 0.001
gb|CX541500.1|CX541500 s13dNF44F01GS015_466302 Germinating ... 48 0.001
gb|DW018712.1|DW018712 EST1227673 MTY Medicago truncatula c... 48 0.001
gb|AC147012.23| Medicago truncatula clone mth2-151j16, WORK... 46 0.004
gb|AC174367.2| Medicago truncatula clone mth2-47m8, WORKING... 46 0.004
gb|AC181973.1| Medicago truncatula clone mth2-12f6, WORKING... 46 0.004
gb|CG975146.1|CG975146 MBEMC66TF mth2 Medicago truncatula g... 44 0.016
gb|BE202645.1|BE202645 EST402667 KV1 Medicago truncatula cD... 44 0.016
gb|AL378617.1|AL378617 MtBB39D06F1 MtBB Medicago truncatula... 44 0.016
gb|AL388415.1|AL388415 MtBC48D08F1 MtBC Medicago truncatula... 44 0.016
gb|AL388416.1|AL388416 MtBC48D08R1 MtBC Medicago truncatula... 44 0.016
gb|BF646432.1|BF646432 NF072B12EC1F1096 Elicited cell cultu... 44 0.016
gb|BG647622.1|BG647622 EST509241 HOGA Medicago truncatula c... 44 0.016
gb|BI272952.1|BI272952 NF099F04FL1F1042 Developing flower M... 44 0.016
gb|BQ139639.1|BQ139639 NF022D07PH1F1061 Phoma-infected Medi... 44 0.016
gb|BQ147474.1|BQ147474 NF040H09FL1F1079 Developing flower M... 44 0.016
gb|CA920250.1|CA920250 EST637968 MTUS Medicago truncatula c... 44 0.016
gb|AC152937.21| Medicago truncatula clone mth2-96n6, comple... 44 0.016
gb|AL375748.1|AL375748 MtBB16G07R2 MtBB Medicago truncatula... 42 0.064
gb|AL383484.1|AL383484 MtBC14E10F1 MtBC Medicago truncatula... 42 0.064
gb|DW016709.1|DW016709 EST1225670 MTY Medicago truncatula c... 42 0.064
gb|AW774927.1|AW774927 EST334078 KV3 Medicago truncatula cD... 40 0.25
gb|DW016381.1|DW016381 EST1225342 MTY Medicago truncatula c... 40 0.25
>gb|AL388185.1|AL388185 MtBC47B04F1 MtBC Medicago truncatula cDNA clone MtBC47B04 T3, mRNA
sequence
Length = 412
Score = 61.9 bits (31), Expect = 7e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 196 gggaacccaggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
|||||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct: 347 gggaacccaggtgaattcacgatgacggaacttgctgagacagtgaaggag 397
Score = 42.1 bits (21), Expect = 0.064
Identities = 76/93 (81%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 2 aacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctgc 61
||||| |||||||| | ||||| || |||||||| ||||||| ||||||||||| |||
Sbjct: 155 aacacatatgggccgcgcatgaatatcgatgatggacgtgttgtcagcaacttcat-tgc 213
Query: 62 tcaggctgtgcgcggtgagcccctgactgtcca 94
||| || |||| ||||| || ||||||||||
Sbjct: 214 tcaagcactgcgtggtgaatccttgactgtcca 246
>gb|AW692995.1|AW692995 NF058A10ST1F1000 Developing stem Medicago truncatula cDNA clone
NF058A10ST 5', mRNA sequence
Length = 656
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 199 aacccaggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct: 518 aacccaggtgaattcacgatgacggaacttgctgagacagtgaaggag 565
Score = 42.1 bits (21), Expect = 0.064
Identities = 76/93 (81%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 2 aacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctgc 61
||||| |||||||| | ||||| || |||||||| ||||||| ||||||||||| |||
Sbjct: 323 aacacatatgggccgcgcatgaatatcgatgatggacgtgttgtcagcaacttcat-tgc 381
Query: 62 tcaggctgtgcgcggtgagcccctgactgtcca 94
||| || |||| ||||| || ||||||||||
Sbjct: 382 tcaagcactgcgtggtgaatccttgactgtcca 414
>gb|BF633105.1|BF633105 NF047D09DT1F1078 Drought Medicago truncatula cDNA clone NF047D09DT
5', mRNA sequence
Length = 495
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 199 aacccaggtgaattcaccatgctggaacttgctgagaatgtgaaggag 246
||||||||||||||||| ||| |||||||||||||| |||||||||
Sbjct: 138 aacccaggtgaattcacgatgacggaacttgctgagacagtgaaggag 185
>gb|AW775633.1|AW775633 EST334698 DSIL Medicago truncatula cDNA clone pDSIL-2M6, mRNA
sequence
Length = 603
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 gaacttgctgagaatgtgaaggag 246
||||||||||||||||||||||||
Sbjct: 274 gaacttgctgagaatgtgaaggag 297
>gb|BI307966.1|BI307966 EST529376 GPOD Medicago truncatula cDNA clone pGPOD-1B14 5' end,
mRNA sequence
Length = 638
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 223 gaacttgctgagaatgtgaaggag 246
||||||||||||||||||||||||
Sbjct: 524 gaacttgctgagaatgtgaaggag 501
>gb|BI308850.1|BI308850 EST530260 GPOD Medicago truncatula cDNA clone pGPOD-8N10 5' end,
mRNA sequence
Length = 629
Score = 48.1 bits (24), Expect = 0.001
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 200 acccaggtgaattcaccatgctggaacttgctgaga 235
|||||||||||||||| ||| ||||||||||||||
Sbjct: 557 acccaggtgaattcacgatgacggaacttgctgaga 592
Score = 42.1 bits (21), Expect = 0.064
Identities = 76/93 (81%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 2 aacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctgc 61
||||| |||||||| | ||||| || |||||||| ||||||| ||||||||||| |||
Sbjct: 361 aacacatatgggccgcgcatgaatatcgatgatggacgtgttgtcagcaacttcat-tgc 419
Query: 62 tcaggctgtgcgcggtgagcccctgactgtcca 94
||| || |||| ||||| || ||||||||||
Sbjct: 420 tcaagcactgcgtggtgaatccttgactgtcca 452
>gb|BI309704.1|BI309704 EST531114 GPOD Medicago truncatula cDNA clone pGPOD-13J18 5' end,
mRNA sequence
Length = 741
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 gaacttgctgagaatgtgaaggag 246
||||||||||||||||||||||||
Sbjct: 383 gaacttgctgagaatgtgaaggag 406
>gb|BI309711.1|BI309711 EST531121 GPOD Medicago truncatula cDNA clone pGPOD-13L10 5' end,
mRNA sequence
Length = 666
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 gaacttgctgagaatgtgaaggag 246
||||||||||||||||||||||||
Sbjct: 373 gaacttgctgagaatgtgaaggag 396
>gb|BI310827.1|BI310827 EST5312577 GESD Medicago truncatula cDNA clone pGESD9M9 5' end,
mRNA sequence
Length = 776
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 gaacttgctgagaatgtgaaggag 246
||||||||||||||||||||||||
Sbjct: 371 gaacttgctgagaatgtgaaggag 394
>gb|BI311395.1|BI311395 EST5313145 GESD Medicago truncatula cDNA clone pGESD10B20 5' end,
mRNA sequence
Length = 726
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 gaacttgctgagaatgtgaaggag 246
||||||||||||||||||||||||
Sbjct: 557 gaacttgctgagaatgtgaaggag 580
>gb|CA919336.1|CA919336 EST637054 MTUS Medicago truncatula cDNA clone MTUS-12C2, mRNA
sequence
Length = 747
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 223 gaacttgctgagaatgtgaaggag 246
||||||||||||||||||||||||
Sbjct: 553 gaacttgctgagaatgtgaaggag 530
>gb|CX541500.1|CX541500 s13dNF44F01GS015_466302 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 533
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 gaacttgctgagaatgtgaaggag 246
||||||||||||||||||||||||
Sbjct: 128 gaacttgctgagaatgtgaaggag 151
>gb|DW018712.1|DW018712 EST1227673 MTY Medicago truncatula cDNA clone MTYBA03, mRNA
sequence
Length = 750
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 223 gaacttgctgagaatgtgaaggag 246
||||||||||||||||||||||||
Sbjct: 210 gaacttgctgagaatgtgaaggag 233
>gb|AC147012.23| Medicago truncatula clone mth2-151j16, WORKING DRAFT SEQUENCE, 2
ordered pieces
Length = 119544
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 205 ggtgaattcaccatgctggaacttgct 231
||||||||||||||||| |||||||||
Sbjct: 65923 ggtgaattcaccatgcttgaacttgct 65897
>gb|AC174367.2| Medicago truncatula clone mth2-47m8, WORKING DRAFT SEQUENCE
Length = 76602
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 205 ggtgaattcaccatgctggaacttgct 231
||||||||||||||||| |||||||||
Sbjct: 10664 ggtgaattcaccatgcttgaacttgct 10690
>gb|AC181973.1| Medicago truncatula clone mth2-12f6, WORKING DRAFT SEQUENCE
Length = 115891
Score = 46.1 bits (23), Expect = 0.004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 205 ggtgaattcaccatgctggaacttgct 231
||||||||||||||||| |||||||||
Sbjct: 49969 ggtgaattcaccatgcttgaacttgct 49995
>gb|CG975146.1|CG975146 MBEMC66TF mth2 Medicago truncatula genomic clone 84L11, DNA
sequence
Length = 915
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 205 ggtgaattcaccatgctggaacttgc 230
|||||||| |||||||||||||||||
Sbjct: 364 ggtgaatttaccatgctggaacttgc 389
>gb|BE202645.1|BE202645 EST402667 KV1 Medicago truncatula cDNA clone pKV1-2M8, mRNA
sequence
Length = 506
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 205 ggtgaattcaccatgctggaacttgc 230
|||||||| |||||||||||||||||
Sbjct: 156 ggtgaatttaccatgctggaacttgc 181
>gb|AL378617.1|AL378617 MtBB39D06F1 MtBB Medicago truncatula cDNA clone MtBB39D06 T3, mRNA
sequence
Length = 477
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 205 ggtgaattcaccatgctggaacttgc 230
|||||||| |||||||||||||||||
Sbjct: 131 ggtgaatttaccatgctggaacttgc 156
>gb|AL388415.1|AL388415 MtBC48D08F1 MtBC Medicago truncatula cDNA clone MtBC48D08 T3, mRNA
sequence
Length = 489
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 205 ggtgaattcaccatgctggaacttgc 230
|||||||| |||||||||||||||||
Sbjct: 360 ggtgaatttaccatgctggaacttgc 385
>gb|AL388416.1|AL388416 MtBC48D08R1 MtBC Medicago truncatula cDNA clone MtBC48D08 T7, mRNA
sequence
Length = 535
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 205 ggtgaattcaccatgctggaacttgc 230
|||||||| |||||||||||||||||
Sbjct: 9 ggtgaatttaccatgctggaacttgc 34
>gb|BF646432.1|BF646432 NF072B12EC1F1096 Elicited cell culture Medicago truncatula cDNA
clone NF072B12EC 5', mRNA sequence
Length = 637
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 205 ggtgaattcaccatgctggaacttgc 230
|||||||| |||||||||||||||||
Sbjct: 600 ggtgaatttaccatgctggaacttgc 625
>gb|BG647622.1|BG647622 EST509241 HOGA Medicago truncatula cDNA clone pHOGA-17M16 5' end,
mRNA sequence
Length = 710
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 205 ggtgaattcaccatgctggaacttgc 230
|||||||| |||||||||||||||||
Sbjct: 669 ggtgaatttaccatgctggaacttgc 694
>gb|BI272952.1|BI272952 NF099F04FL1F1042 Developing flower Medicago truncatula cDNA clone
NF099F04FL 5', mRNA sequence
Length = 455
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 205 ggtgaattcaccatgctggaacttgc 230
|||||||| |||||||||||||||||
Sbjct: 208 ggtgaatttaccatgctggaacttgc 233
>gb|BQ139639.1|BQ139639 NF022D07PH1F1061 Phoma-infected Medicago truncatula cDNA clone
NF022D07PH 5', mRNA sequence
Length = 711
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 205 ggtgaattcaccatgctggaacttgc 230
|||||||| |||||||||||||||||
Sbjct: 612 ggtgaatttaccatgctggaacttgc 587
>gb|BQ147474.1|BQ147474 NF040H09FL1F1079 Developing flower Medicago truncatula cDNA clone
NF040H09FL 5', mRNA sequence
Length = 682
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 205 ggtgaattcaccatgctggaacttgc 230
|||||||| |||||||||||||||||
Sbjct: 190 ggtgaatttaccatgctggaacttgc 215
>gb|CA920250.1|CA920250 EST637968 MTUS Medicago truncatula cDNA clone MTUS-25E8, mRNA
sequence
Length = 737
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 205 ggtgaattcaccatgctggaacttgc 230
|||||||| |||||||||||||||||
Sbjct: 550 ggtgaatttaccatgctggaacttgc 525
>gb|AC152937.21| Medicago truncatula clone mth2-96n6, complete sequence
Length = 108802
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 205 ggtgaattcaccatgctggaacttgc 230
|||||||| |||||||||||||||||
Sbjct: 40964 ggtgaatttaccatgctggaacttgc 40939
>gb|AL375748.1|AL375748 MtBB16G07R2 MtBB Medicago truncatula cDNA clone MtBB16G07 T7, mRNA
sequence
Length = 529
Score = 42.1 bits (21), Expect = 0.064
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 206 gtgaattcaccatgctggaacttgc 230
||||||| |||||||||||||||||
Sbjct: 1 gtgaatttaccatgctggaacttgc 25
>gb|AL383484.1|AL383484 MtBC14E10F1 MtBC Medicago truncatula cDNA clone MtBC14E10 T3, mRNA
sequence
Length = 428
Score = 42.1 bits (21), Expect = 0.064
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 223 gaacttgctgagaatgtgaaggag 246
||||||||| ||||||||||||||
Sbjct: 309 gaacttgctnagaatgtgaaggag 332
>gb|DW016709.1|DW016709 EST1225670 MTY Medicago truncatula cDNA clone MTYAK62, mRNA
sequence
Length = 761
Score = 42.1 bits (21), Expect = 0.064
Identities = 76/93 (81%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 2 aacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcatctgc 61
||||| |||||||| | ||||| || |||||||| ||||||| ||||||||||| |||
Sbjct: 630 aacacatatgggccgcgcatgaatatcgatgatggacgtgttgtcagcaacttcat-tgc 688
Query: 62 tcaggctgtgcgcggtgagcccctgactgtcca 94
||| || |||| ||||| || ||||||||||
Sbjct: 689 tcaagcactgcgtggtgaatccttgactgtcca 721
>gb|AW774927.1|AW774927 EST334078 KV3 Medicago truncatula cDNA clone pKV3-24N1, mRNA
sequence
Length = 468
Score = 40.1 bits (20), Expect = 0.25
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 2 aacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcat 57
||||| |||||||| | ||||| || |||||||| ||||||| |||||||||||
Sbjct: 209 aacacatatgggccgcgcatgaatatcgatgatggacgtgttgtcagcaacttcat 264
>gb|DW016381.1|DW016381 EST1225342 MTY Medicago truncatula cDNA clone MTYAG47, mRNA
sequence
Length = 759
Score = 40.1 bits (20), Expect = 0.25
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 2 aacacctatgggcctaggatgaacattgatgatggccgtgttgctagcaacttcat 57
||||| |||||||| | ||||| || |||||||| ||||||| |||||||||||
Sbjct: 691 aacacatatgggccgcgcatgaatatcgatgatggacgtgttgtcagcaacttcat 746
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 149,782
Number of Sequences: 392609
Number of extensions: 149782
Number of successful extensions: 9359
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9298
Number of HSP's gapped (non-prelim): 61
length of query: 725
length of database: 441,732,993
effective HSP length: 19
effective length of query: 706
effective length of database: 434,273,422
effective search space: 306597035932
effective search space used: 306597035932
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)