BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1738955.2.1
         (1271 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CX523727.1|CX523727  s13dNF01C11AT086_336301 Aphid-Infect...    42   0.11 
gb|CX532546.1|CX532546  s13dNF73D08MJ062_271379 Methyl Jasmo...    42   0.11 
emb|CR962128.2|  Medicago truncatula chromosome 5 clone mth2...    42   0.11 
emb|CR962133.1|  Medicago truncatula chromosome 5 clone mth2...    40   0.45 

>gb|CX523727.1|CX523727 s13dNF01C11AT086_336301 Aphid-Infected Shoots Medicago truncatula
            cDNA, mRNA sequence
          Length = 198

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1078 gcgtcgccgccgccgtagaacgtggcgtg 1106
            ||||||| |||||||||||| ||||||||
Sbjct: 183  gcgtcgctgccgccgtagaaggtggcgtg 155



>gb|CX532546.1|CX532546 s13dNF73D08MJ062_271379 Methyl Jasmonate-Elicited Root Cell
            Suspension Culture Medicago truncatula cDNA, mRNA
            sequence
          Length = 605

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 1078 gcgtcgccgccgccgtagaacgtggcgtg 1106
            ||||||| |||||||||||| ||||||||
Sbjct: 121  gcgtcgctgccgccgtagaaggtggcgtg 93



>emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11, COMPLETE SEQUENCE
          Length = 136557

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 1078  gcgtcgccgccgccgtagaacgtggcgtg 1106
             ||||||| |||||||||||| ||||||||
Sbjct: 94973 gcgtcgctgccgccgtagaaggtggcgtg 95001



>emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2-17h8, COMPLETE SEQUENCE
          Length = 114811

 Score = 40.1 bits (20), Expect = 0.45
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 574   ttgctctgccagttctggccccagttgcgggacatgggctgcca 617
             |||||||||||||| |||||||| || |  |||||||| |||||
Sbjct: 47890 ttgctctgccagttttggccccaatttcttgacatgggttgcca 47847



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 172,261
Number of Sequences: 392609
Number of extensions: 172261
Number of successful extensions: 13194
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13181
Number of HSP's gapped (non-prelim): 13
length of query: 1271
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1251
effective length of database: 433,880,813
effective search space: 542784897063
effective search space used: 542784897063
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)