BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716323.2.2
(764 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW329094.2|AW329094 N200300e rootphos(-) Medicago trunca... 56 4e-006
gb|BG588349.1|BG588349 EST490158 MHRP- Medicago truncatula ... 56 4e-006
gb|CG956767.1|CG956767 MBEDG83TRC mth2 Medicago truncatula ... 40 0.27
>gb|AW329094.2|AW329094 N200300e rootphos(-) Medicago truncatula cDNA clone MHRP-16B12,
mRNA sequence
Length = 595
Score = 56.0 bits (28), Expect = 4e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 228 gatcggttgaaagagttgataaagtacaagggatatcaggtacctcctgccgaact 283
||||| ||||||||| | || |||||||||||||||||||| ||||| || |||||
Sbjct: 371 gatcgtttgaaagagctcattaagtacaagggatatcaggtccctccagcagaact 426
>gb|BG588349.1|BG588349 EST490158 MHRP- Medicago truncatula cDNA clone pMHRP-47N9, mRNA
sequence
Length = 609
Score = 56.0 bits (28), Expect = 4e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 228 gatcggttgaaagagttgataaagtacaagggatatcaggtacctcctgccgaact 283
||||| ||||||||| | || |||||||||||||||||||| ||||| || |||||
Sbjct: 199 gatcgtttgaaagagctcattaagtacaagggatatcaggtccctccagcagaact 254
>gb|CG956767.1|CG956767 MBEDG83TRC mth2 Medicago truncatula genomic clone 31N21, DNA
sequence
Length = 825
Score = 40.1 bits (20), Expect = 0.27
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 672 atataattgaccccaatatttgga 695
|||||||||||| |||||||||||
Sbjct: 713 atataattgaccacaatatttgga 736
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 158,613
Number of Sequences: 392609
Number of extensions: 158613
Number of successful extensions: 11342
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11337
Number of HSP's gapped (non-prelim): 5
length of query: 764
length of database: 441,732,993
effective HSP length: 20
effective length of query: 744
effective length of database: 433,880,813
effective search space: 322807324872
effective search space used: 322807324872
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)