BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716233.2.1
(1153 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA921210.1|CA921210 EST638928 MTUS Medicago truncatula c... 172 4e-041
gb|BG452468.1|BG452468 NF089F06LF1F1048 Developing leaf Med... 137 2e-030
gb|DW018596.1|DW018596 EST1227557 MTY Medicago truncatula c... 123 4e-026
gb|BF004691.1|BF004691 EST433189 KV1 Medicago truncatula cD... 113 3e-023
gb|BI263331.1|BI263331 NF091D01PL1F1012 Phosphate starved l... 113 3e-023
gb|BQ149655.1|BQ149655 NF107D02FL1F1026 Developing flower M... 113 3e-023
gb|AC146572.11| Medicago truncatula clone mth2-104c10, comp... 111 1e-022
gb|BE319805.2|BE319805 NF020A01RT1F1001 Developing root Med... 98 2e-018
gb|CG967562.1|CG967562 MBEKO04TF mth2 Medicago truncatula g... 96 8e-018
emb|CR343665.1| mte1-76N8RM1 BAC end, cultivar Jemalong A17... 96 8e-018
emb|CR297274.1| mte1-14C10RM1 BAC end, cultivar Jemalong A1... 96 8e-018
gb|CX541928.1|CX541928 s13dNF0BF10GS091_467164 Germinating ... 96 8e-018
gb|AJ499063.1|AJ499063 AJ499063 MTPOSE Medicago truncatula ... 74 3e-011
gb|BI272777.1|BI272777 NF092B03FL1F1028 Developing flower M... 70 5e-010
gb|BF640668.1|BF640668 NF032H03IN1F1031 Insect herbivory Me... 68 2e-009
emb|CR487557.1| mth2-156M4RM1 BAC end, cultivar Jemalong A1... 66 7e-009
emb|CR306331.1| mte1-26J19RM1 BAC end, cultivar Jemalong A1... 62 1e-007
emb|CR501194.1| mth2-178J6RM1 BAC end, cultivar Jemalong A1... 58 2e-006
emb|CR311810.1| mte1-34G19RM1 BAC end, cultivar Jemalong A1... 58 2e-006
gb|BE315920.2|BE315920 NF028C07LF1F1050 Developing leaf Med... 58 2e-006
gb|BI271526.1|BI271526 NF057A10FL1F1081 Developing flower M... 42 0.10
gb|AC149474.15| Medicago truncatula clone mth2-122l24, comp... 42 0.10
gb|AC149080.12| Medicago truncatula clone mth2-75j5, comple... 42 0.10
gb|CG966424.1|CG966424 MBEMP33TF mth2 Medicago truncatula g... 40 0.41
gb|AC126007.16| Medicago truncatula clone mth2-11o4, comple... 40 0.41
emb|CT571260.1| Medicago truncatula chromosome 5 clone mth2... 40 0.41
>gb|CA921210.1|CA921210 EST638928 MTUS Medicago truncatula cDNA clone MTUS-37D6, mRNA
sequence
Length = 813
Score = 172 bits (87), Expect = 4e-041
Identities = 370/463 (79%), Gaps = 1/463 (0%)
Strand = Plus / Plus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgcct 394
||||||||||| || || ||||| ||||| || ||||| || | || ||||||||||||
Sbjct: 282 taagtcatcagcaacaggtgaggaaatgtagtaccaaaataagccccgtcgatgttgcct 341
Query: 395 tggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtg 454
|| |||||||| | ||||||| || ||||| || |||| ||||||||||||||||||
Sbjct: 342 tgatacttggaccgaggatagtaaatgtcttcacacctcgggcaatatatcttcacagtg 401
Query: 455 ctcgatctaggaacatctgattgccctgctggaaggcagggctggccacagcagtacacc 514
|| || ||||||| || || || || |||||||||| || || || ||||||| ||
Sbjct: 402 ctagacctaggaatgtcggactggccaactggaaggcaaggttgtccggagcagtaaact 461
Query: 515 ctggggcatctaccaaagtcgtagttcttgaacttctccaacattgcagctagacccttg 574
|| ||||||||||| ||||| ||||||||| |||| |||| ||| ||||| || || |||
Sbjct: 462 cttgggcatctaccgaagtcatagttcttgtacttgtccagcatggcagccagtcctttg 521
Query: 575 ctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcgatt 634
||||| || || || || |||||||| | ||| || |||||||| || | ||| ||||||
Sbjct: 522 ctggtcaatatataacgggcatgaatcataccataaagcatctccgctgctgattcgatt 581
Query: 635 aattcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaagatgaga 694
|| |||||||| |||||||||||| |||| ||| || ||||||| || || || | |
Sbjct: 582 aactcattttgttcctcggtaaacatgtcaccatgggaggactcaacatccaaaattaaa 641
Query: 695 tcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcc 754
||||| |||||||||||||| ||||| ||| | |||| | ||||||| || || |||||
Sbjct: 642 tcaagagcataatcataataaggcacttgactgctca-aacacacagattgaagtcatct 700
Query: 755 tgtatatagtcatcatcgatctcacaaaagaattcattgcctc 797
|| || || ||||| || | |||||||||||||||||| ||||
Sbjct: 701 tggatgtaatcatcgtcaacctcacaaaagaattcatttcctc 743
>gb|BG452468.1|BG452468 NF089F06LF1F1048 Developing leaf Medicago truncatula cDNA clone
NF089F06LF 5', mRNA sequence
Length = 638
Score = 137 bits (69), Expect = 2e-030
Identities = 224/276 (81%)
Strand = Plus / Minus
Query: 611 agcatctctgcagatgactcgattaattcattttgctcctcggtaaacccgtcatcatta 670
|||||||| || | ||| |||||||| |||||||| |||||||||||| |||| |||
Sbjct: 625 agcatctccgctgntgattcgattaactcattttgttcctcggtaaacatgtcaccatgg 566
Query: 671 gaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacctgattactc 730
|| ||||||| || || || | |||||| |||||||||||||| ||||| ||| | |||
Sbjct: 565 gaggactcaacatccaaaattaaatcaagagcataatcataataaggcacttgactgctc 506
Query: 731 agaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattca 790
| ||||||||| || || ||||| || || || ||||| || | ||||||||||||||||
Sbjct: 505 aaaccacacagattgaagtcatcttggatgtaatcatcgtcaacctcacaaaagaattca 446
Query: 791 ttgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactc 850
|| |||| ||| | || ||||| || ||||| || || || || || |||||||||||
Sbjct: 445 tttcctctcaaattgcaaaaccacgagatccaagatgtatcatcaccgtcggaaccacta 386
Query: 851 acatcagaatcttcactgtcagtttcaaattcctca 886
|||||||| ||||||||||| |||||| ||||||||
Sbjct: 385 acatcagactcttcactgtccgtttcagattcctca 350
>gb|DW018596.1|DW018596 EST1227557 MTY Medicago truncatula cDNA clone MTYB854, mRNA
sequence
Length = 792
Score = 123 bits (62), Expect = 4e-026
Identities = 209/258 (81%)
Strand = Plus / Minus
Query: 629 tcgattaattcattttgctcctcggtaaacccgtcatcattagaagactcaatgtctaag 688
|||||||| |||||||| |||||||||||| |||| ||| || ||||||| || ||
Sbjct: 625 tcgattaactcattttgttcctcggtaaacatgtcaccatgggaggactcaacatccaaa 566
Query: 689 atgagatcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaa 748
|| | |||||| |||||||||||||| ||||| ||| | |||| ||||||||| || ||
Sbjct: 565 attaaatcaagagcataatcataataaggcacttgactgctcaaaccacacagattgaag 506
Query: 749 tcatcctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacag 808
||||| || || || ||||| || | |||||||||||||||||| |||| ||| | ||
Sbjct: 505 tcatcttggatgtaatcatcgtcaacctcacaaaagaattcatttcctctcaaattgcaa 446
Query: 809 aaccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactg 868
||||| || ||||| || || || || || ||||||||||| |||||||| |||| ||||
Sbjct: 445 aaccacgagatccaagatgtatcatcaccgtcggaaccactaacatcagactcttaactg 386
Query: 869 tcagtttcaaattcctca 886
|| |||||| ||||||||
Sbjct: 385 tccgtttcagattcctca 368
>gb|BF004691.1|BF004691 EST433189 KV1 Medicago truncatula cDNA clone pKV1-18I24, mRNA
sequence
Length = 566
Score = 113 bits (57), Expect = 3e-023
Identities = 159/193 (82%)
Strand = Plus / Minus
Query: 694 atcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatc 753
|||||| |||||||||||||| ||||| ||| | |||| ||||||||| || || |||||
Sbjct: 517 atcaagagcataatcataataaggcacttgactgctcaaaccacacagattgaagtcatc 458
Query: 754 ctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaacca 813
|| || || ||||| || | |||||||||||||||||| |||| ||| | || |||||
Sbjct: 457 ttggatgtaatcatcgtcaacctcacaaaagaattcatttcctctcaaattgcaaaacca 398
Query: 814 tgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagt 873
|| ||||| || || || || || ||||||||||| |||||||| ||||||||||| ||
Sbjct: 397 cgagatccaagatgtatcatcaccgtcggaaccactaacatcagactcttcactgtccgt 338
Query: 874 ttcaaattcctca 886
|||| ||||||||
Sbjct: 337 ttcagattcctca 325
>gb|BI263331.1|BI263331 NF091D01PL1F1012 Phosphate starved leaf Medicago truncatula cDNA
clone NF091D01PL 5', mRNA sequence
Length = 582
Score = 113 bits (57), Expect = 3e-023
Identities = 159/193 (82%)
Strand = Plus / Minus
Query: 694 atcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatc 753
|||||| |||||||||||||| ||||| ||| | |||| ||||||||| || || |||||
Sbjct: 539 atcaagagcataatcataataaggcacttgactgctcaaaccacacagattgaagtcatc 480
Query: 754 ctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaacca 813
|| || || ||||| || | |||||||||||||||||| |||| ||| | || |||||
Sbjct: 479 ttggatgtaatcatcgtcaacctcacaaaagaattcatttcctctcaaattgcaaaacca 420
Query: 814 tgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagt 873
|| ||||| || || || || || ||||||||||| |||||||| ||||||||||| ||
Sbjct: 419 cgagatccaagatgtatcatcaccgtcggaaccactaacatcagactcttcactgtccgt 360
Query: 874 ttcaaattcctca 886
|||| ||||||||
Sbjct: 359 ttcagattcctca 347
>gb|BQ149655.1|BQ149655 NF107D02FL1F1026 Developing flower Medicago truncatula cDNA clone
NF107D02FL 5', mRNA sequence
Length = 619
Score = 113 bits (57), Expect = 3e-023
Identities = 159/193 (82%)
Strand = Plus / Minus
Query: 694 atcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatc 753
|||||| |||||||||||||| ||||| ||| | |||| ||||||||| || || |||||
Sbjct: 558 atcaagagcataatcataataaggcacttgactgctcaaaccacacagattgaagtcatc 499
Query: 754 ctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaacca 813
|| || || ||||| || | |||||||||||||||||| |||| ||| | || |||||
Sbjct: 498 ttggatgtaatcatcgtcaacctcacaaaagaattcatttcctctcaaattgcaaaacca 439
Query: 814 tgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagt 873
|| ||||| || || || || || ||||||||||| |||||||| ||||||||||| ||
Sbjct: 438 cgagatccaagatgtatcatcaccgtcggaaccactaacatcagactcttcactgtccgt 379
Query: 874 ttcaaattcctca 886
|||| ||||||||
Sbjct: 378 ttcagattcctca 366
>gb|AC146572.11| Medicago truncatula clone mth2-104c10, complete sequence
Length = 109548
Score = 111 bits (56), Expect = 1e-022
Identities = 158/192 (82%)
Strand = Plus / Minus
Query: 694 atcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatc 753
|||||| |||||||||||||| ||||| ||| | |||| ||||||||| || || |||||
Sbjct: 86419 atcaagagcataatcataataaggcacttgactgctcaaaccacacagattgaagtcatc 86360
Query: 754 ctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaacca 813
|| || || ||||| || | |||||||||||||||||| |||| ||| | || |||||
Sbjct: 86359 ttggatgtaatcatcgtcaacctcacaaaagaattcatttcctctcaaattgcaaaacca 86300
Query: 814 tgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagt 873
|| ||||| || || || || || ||||||||||| |||||||| ||||||||||| ||
Sbjct: 86299 cgagatccaagatgtatcatcaccgtcggaaccactaacatcagactcttcactgtccgt 86240
Query: 874 ttcaaattcctc 885
|||| |||||||
Sbjct: 86239 ttcagattcctc 86228
Score = 73.8 bits (37), Expect = 3e-011
Identities = 133/165 (80%)
Strand = Plus / Minus
Query: 390 tgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttca 449
||||||| |||||||| | ||||||| || ||||| || |||| |||||||||||||
Sbjct: 86953 tgccttgatacttggaccgaggatagtaaatgtcttcacacctcgggcaatatatcttca 86894
Query: 450 cagtgctcgatctaggaacatctgattgccctgctggaaggcagggctggccacagcagt 509
||||||| || ||||||| || || || || |||||||||| || || || ||||||
Sbjct: 86893 cagtgctagacctaggaatgtcggactggccaactggaaggcaaggttgtccggagcagt 86834
Query: 510 acaccctggggcatctaccaaagtcgtagttcttgaacttctcca 554
| || || ||||||||||| ||||| ||||||||| |||| ||||
Sbjct: 86833 aaactcttgggcatctaccgaagtcatagttcttgtacttgtcca 86789
Score = 54.0 bits (27), Expect = 3e-005
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 572 ttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgcagatgactcg 631
|||||||| || || || || |||||||| | ||| || |||||||| || | ||| |||
Sbjct: 86683 ttgctggtcaatatataacgggcatgaatcataccataaagcatctccgctgctgattcg 86624
Query: 632 attaattcattttgctcctcggtaaac 658
||||| |||||||| ||||||||||||
Sbjct: 86623 attaactcattttgttcctcggtaaac 86597
>gb|BE319805.2|BE319805 NF020A01RT1F1001 Developing root Medicago truncatula cDNA clone
NF020A01RT 5', mRNA sequence
Length = 390
Score = 97.6 bits (49), Expect = 2e-018
Identities = 157/193 (81%)
Strand = Plus / Minus
Query: 694 atcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatc 753
|||||| ||||||||||| || ||||| || | |||| ||||| ||||| || |||||
Sbjct: 203 atcaagagcataatcatagtaaggcacttggctgctcaatccacaaaggttgaagtcatc 144
Query: 754 ctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaacca 813
|| || || |||||||| | |||||||||||| ||||| |||| | | ||||||||
Sbjct: 143 ttggatgtaatcatcatcaacctcacaaaagaactcatttcctctgagattgcagaacca 84
Query: 814 tgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagt 873
||| ||||| || ||||||||||| || |||||||||||||| || ||||||||||| ||
Sbjct: 83 tgagatccaagatgtgtcctctccatcagaaccactcacatctgactcttcactgtctgt 24
Query: 874 ttcaaattcctca 886
|||| | ||||||
Sbjct: 23 ttcagactcctca 11
Score = 54.0 bits (27), Expect = 3e-005
Identities = 97/119 (81%), Gaps = 1/119 (0%)
Strand = Plus / Minus
Query: 504 agcagtacaccctggggcatctaccaaagtcgtagttcttgaacttctcca-acattgca 562
||||||| || || ||||||||||||||||| ||||||||| |||| || | ||| |||
Sbjct: 379 agcagtaaactcttgggcatctaccaaagtcatagttcttgtacttgtcaaggcatagca 320
Query: 563 gctagacccttgctggttaaaatgtatcgtgcatgaattaaaccgtacagcatctctgc 621
|| | || ||||| || || |||||||| |||||||| | ||| || |||||||||||
Sbjct: 319 gccattcctttgcttgtcaatatgtatcgcgcatgaatcataccataaagcatctctgc 261
>gb|CG967562.1|CG967562 MBEKO04TF mth2 Medicago truncatula genomic clone 75B7, DNA sequence
Length = 906
Score = 95.6 bits (48), Expect = 8e-018
Identities = 150/184 (81%)
Strand = Plus / Plus
Query: 694 atcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatc 753
|||||| ||||||||||| || ||||| || | |||| ||||| ||||| || |||||
Sbjct: 396 atcaagagcataatcatagtaaggcacttggctgctcaatccacaaaggttgaagtcatc 455
Query: 754 ctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaacca 813
|| || || |||||||| | |||||||||||| ||||| |||| | | ||||||||
Sbjct: 456 ttggatgtaatcatcatcaacctcacaaaagaactcatttcctctgagattgcagaacca 515
Query: 814 tgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagt 873
||| ||||| || ||||||||||| || |||||||||||||| || ||||||||||| ||
Sbjct: 516 tgagatccaagatgtgtcctctccatcagaaccactcacatctgactcttcactgtctgt 575
Query: 874 ttca 877
||||
Sbjct: 576 ttca 579
>emb|CR343665.1| mte1-76N8RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 626
Score = 95.6 bits (48), Expect = 8e-018
Identities = 150/184 (81%)
Strand = Plus / Plus
Query: 694 atcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatc 753
|||||| ||||||||||| || ||||| || | |||| ||||| ||||| || |||||
Sbjct: 329 atcaagagcataatcatagtaaggcacttggctgctcaatccacaaaggttgaagtcatc 388
Query: 754 ctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaacca 813
|| || || |||||||| | |||||||||||| ||||| |||| | | ||||||||
Sbjct: 389 ttggatgtaatcatcatcaacctcacaaaagaactcatttcctctgagattgcagaacca 448
Query: 814 tgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagt 873
||| ||||| || ||||||||||| || |||||||||||||| || ||||||||||| ||
Sbjct: 449 tgagatccaagatgtgtcctctccatcagaaccactcacatccgactcttcactgtctgt 508
Query: 874 ttca 877
||||
Sbjct: 509 ttca 512
>emb|CR297274.1| mte1-14C10RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 560
Score = 95.6 bits (48), Expect = 8e-018
Identities = 150/184 (81%)
Strand = Plus / Plus
Query: 694 atcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatc 753
|||||| ||||||||||| || ||||| || | |||| ||||| ||||| || |||||
Sbjct: 161 atcaagagcataatcatagtaaggcacttggctgctcaatccacaaaggttgaagtcatc 220
Query: 754 ctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaacca 813
|| || || |||||||| | |||||||||||| ||||| |||| | | ||||||||
Sbjct: 221 ttggatgtaatcatcatcaacctcacaaaagaactcatttcctctgagattgcagaacca 280
Query: 814 tgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagt 873
||| ||||| || ||||||||||| || |||||||||||||| || ||||||||||| ||
Sbjct: 281 tgagatccaagatgtgtcctctccatcagaaccactcacatctgactcttcactgtctgt 340
Query: 874 ttca 877
||||
Sbjct: 341 ttca 344
>gb|CX541928.1|CX541928 s13dNF0BF10GS091_467164 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 620
Score = 95.6 bits (48), Expect = 8e-018
Identities = 150/184 (81%)
Strand = Plus / Minus
Query: 694 atcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatc 753
|||||| ||||||||||| || ||||| || | |||| ||||| ||||| || |||||
Sbjct: 612 atcaagagcataatcatagtaaggcacttggctgctcaatccacaaaggttgaagtcatc 553
Query: 754 ctgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaacca 813
|| || || |||||||| | |||||||||||| ||||| |||| | | ||||||||
Sbjct: 552 ttggatgtaatcatcatcaacctcacaaaagaactcatttcctctgagattgcagaacca 493
Query: 814 tgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtcagt 873
||| ||||| || ||||||||||| || |||||||||||||| || ||||||||||| ||
Sbjct: 492 tgagatccaagatgtgtcctctccatcagaaccactcacatccgactcttcactgtctgt 433
Query: 874 ttca 877
||||
Sbjct: 432 ttca 429
>gb|AJ499063.1|AJ499063 AJ499063 MTPOSE Medicago truncatula cDNA clone mt--acc955211g03,
mRNA sequence
Length = 551
Score = 73.8 bits (37), Expect = 3e-011
Identities = 109/133 (81%)
Strand = Plus / Minus
Query: 335 taagtcatcaggaaaagatgagggaatgtcgtcccaaagtatgatccatcgatgttgcct 394
||||||||||| || || ||||| ||||| || ||||| || | || ||||||||||||
Sbjct: 191 taagtcatcagcaacaggtgaggaaatgtagtaccaaaataagccccgtcgatgttgcct 132
Query: 395 tggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttcacagtg 454
|| |||||||| | ||||||| || ||||| || |||| ||||||||||||||||||
Sbjct: 131 tgatacttggaccgaggatagtaaatgtcttcacacctcgggcaatatatcttcacagtg 72
Query: 455 ctcgatctaggaa 467
|| || |||||||
Sbjct: 71 ctagacctaggaa 59
>gb|BI272777.1|BI272777 NF092B03FL1F1028 Developing flower Medicago truncatula cDNA clone
NF092B03FL 5', mRNA sequence
Length = 587
Score = 69.9 bits (35), Expect = 5e-010
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 811 ccatgaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttcactgtc 870
|||||| ||||| || ||||||||||| || |||||||||||||| || |||||||||||
Sbjct: 516 ccatgagatccaagatgtgtcctctccatcagaaccactcacatccgactcttcactgtc 457
Query: 871 agtttca 877
||||||
Sbjct: 456 tgtttca 450
>gb|BF640668.1|BF640668 NF032H03IN1F1031 Insect herbivory Medicago truncatula cDNA clone
NF032H03IN 5', mRNA sequence
Length = 546
Score = 67.9 bits (34), Expect = 2e-009
Identities = 92/112 (82%)
Strand = Plus / Minus
Query: 775 ctcacaaaagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctc 834
|||||||||||||||||| |||| | | || ||||| || ||||| || || || ||
Sbjct: 506 ctcacaaaagaattcatttcctctcnnattgcaaaaccacgagatccaagatgtatcatc 447
Query: 835 tccctcggaaccactcacatcagaatcttcactgtcagtttcaaattcctca 886
|| ||||||||||| |||||||| ||||||||||| |||||| ||||||||
Sbjct: 446 accgtcggaaccactaacatcagactcttcactgtccgtttcagattcctca 395
>emb|CR487557.1| mth2-156M4RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 165
Score = 65.9 bits (33), Expect = 7e-009
Identities = 93/113 (82%)
Strand = Plus / Minus
Query: 437 caatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcagggc 496
|||||||| |||||||| || || ||||||| ||||| || || ||||||| || ||
Sbjct: 118 caatatattttcacagtacttgacctaggaatgtctgactgaccaactggaagacaaggt 59
Query: 497 tggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaactt 549
|| ||| ||||||| || || ||||||||||||||||| ||||||||| ||||
Sbjct: 58 tgtccagagcagtaaactcttgggcatctaccaaagtcatagttcttgtactt 6
>emb|CR306331.1| mte1-26J19RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 692
Score = 61.9 bits (31), Expect = 1e-007
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 839 tcggaaccactcacatcagaatcttcactgtcagtttcaaattcctc 885
||||||||||| |||||||| ||||||||||| |||||| |||||||
Sbjct: 55 tcggaaccactaacatcagactcttcactgtccgtttcagattcctc 101
>emb|CR501194.1| mth2-178J6RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 805
Score = 58.0 bits (29), Expect = 2e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 437 caatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcagggc 496
|||||||| |||||||| || || ||||||| || || || || ||||||| || ||
Sbjct: 168 caatatattttcacagtacttgacctaggaatgtccgactgaccaactggaagacaaggt 109
Query: 497 tggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaactt 549
|| ||| ||||||| || || ||||||||||||||||| ||||||||| ||||
Sbjct: 108 tgtccagagcagtaaactcttgggcatctaccaaagtcatagttcttgtactt 56
>emb|CR311810.1| mte1-34G19RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 624
Score = 58.0 bits (29), Expect = 2e-006
Identities = 92/113 (81%)
Strand = Plus / Minus
Query: 437 caatatatcttcacagtgctcgatctaggaacatctgattgccctgctggaaggcagggc 496
|||||||| |||||||| || || ||||||| || || || || ||||||| || ||
Sbjct: 407 caatatattttcacagtacttgacctaggaatgtccgactgaccaactggaagacaaggt 348
Query: 497 tggccacagcagtacaccctggggcatctaccaaagtcgtagttcttgaactt 549
|| ||| ||||||| || || ||||||||||||||||| ||||||||| ||||
Sbjct: 347 tgtccagagcagtaaactcttgggcatctaccaaagtcatagttcttgtactt 295
>gb|BE315920.2|BE315920 NF028C07LF1F1050 Developing leaf Medicago truncatula cDNA clone
NF028C07LF 5', mRNA sequence
Length = 467
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 827 gtgtcctctccctcggaaccactcacatcagaatcttcactgtcagttt 875
||||||||||| || |||||||||||||| || ||||||||||| ||||
Sbjct: 463 gtgtcctctccatcagaaccactcacatccgactcttcactgtctgttt 415
>gb|BI271526.1|BI271526 NF057A10FL1F1081 Developing flower Medicago truncatula cDNA clone
NF057A10FL 5', mRNA sequence
Length = 472
Score = 42.1 bits (21), Expect = 0.10
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 263 ggcttgtgaagtttgaagccgaaaacccttgga 295
||||||||||||||||| || ||||| ||||||
Sbjct: 134 ggcttgtgaagtttgaacccaaaaactcttgga 102
>gb|AC149474.15| Medicago truncatula clone mth2-122l24, complete sequence
Length = 129008
Score = 42.1 bits (21), Expect = 0.10
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 842 gaaccactcacatcagaatcttcac 866
||||||||||||||||||| |||||
Sbjct: 18642 gaaccactcacatcagaattttcac 18618
>gb|AC149080.12| Medicago truncatula clone mth2-75j5, complete sequence
Length = 96907
Score = 42.1 bits (21), Expect = 0.10
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 842 gaaccactcacatcagaatcttcac 866
||||||||||||||||||| |||||
Sbjct: 52399 gaaccactcacatcagaattttcac 52423
>gb|CG966424.1|CG966424 MBEMP33TF mth2 Medicago truncatula genomic clone 3F18, DNA sequence
Length = 925
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 693 gatcaagtgcataatcataa 712
||||||||||||||||||||
Sbjct: 820 gatcaagtgcataatcataa 839
>gb|AC126007.16| Medicago truncatula clone mth2-11o4, complete sequence
Length = 106747
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 539 ttcttgaacttctccaacat 558
||||||||||||||||||||
Sbjct: 25857 ttcttgaacttctccaacat 25876
>emb|CT571260.1| Medicago truncatula chromosome 5 clone mth2-35p14, COMPLETE SEQUENCE
Length = 120436
Score = 40.1 bits (20), Expect = 0.41
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 693 gatcaagtgcataatcataa 712
||||||||||||||||||||
Sbjct: 3147 gatcaagtgcataatcataa 3128
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 221,686
Number of Sequences: 392609
Number of extensions: 221686
Number of successful extensions: 15643
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15580
Number of HSP's gapped (non-prelim): 57
length of query: 1153
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1133
effective length of database: 433,880,813
effective search space: 491586961129
effective search space used: 491586961129
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)