BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131584.2.4
(739 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW573942.1|AW573942 EST316533 GVN Medicago truncatula cD... 94 2e-017
gb|BF649434.1|BF649434 NF080B09EC1F1076 Elicited cell cultu... 94 2e-017
gb|BF650818.1|BF650818 NF097B10EC1F1079 Elicited cell cultu... 94 2e-017
gb|BI266739.1|BI266739 NF085B07IN1F1061 Insect herbivory Me... 94 2e-017
gb|BM779378.1|BM779378 EST589954 KV2 Medicago truncatula cD... 94 2e-017
gb|AJ497473.1|AJ497473 AJ497473 MTFLOW Medicago truncatula ... 94 2e-017
gb|CX520933.1|CX520933 s13dNF59C06VI040_449652 Virus-Infect... 94 2e-017
gb|CX538446.1|CX538446 s13dNF79E01GS003_460144 Germinating ... 94 2e-017
gb|DW016473.1|DW016473 EST1225434 MTY Medicago truncatula c... 94 2e-017
gb|AL376211.1|AL376211 MtBB22A12F1 MtBB Medicago truncatula... 92 8e-017
gb|AJ847442.1|AJ847442 AJ847442 MtSTA Medicago truncatula c... 92 8e-017
gb|BG455780.1|BG455780 NF067D09PL1F1076 Phosphate starved l... 88 1e-015
gb|BI272395.1|BI272395 NF020H02FL1F1027 Developing flower M... 70 3e-010
>gb|AW573942.1|AW573942 EST316533 GVN Medicago truncatula cDNA clone pGVN-49J6, mRNA
sequence
Length = 393
Score = 93.7 bits (47), Expect = 2e-017
Identities = 200/251 (79%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||| |||||||| | ||| || || || || || || ||||||||||| ||
Sbjct: 80 aagaatgaggaagaggaattcaacactggtccactatctgtactcatgatgagtgtgaaa 139
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||| ||||| || |||||||| || |||||||| ||||| || |||||||| |
Sbjct: 140 aacaacacacaggttctgatcaattgtcgtaacaacaaaaagcttctaggccgtgtcagg 199
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
||||||||| | ||||| || ||||| || || || || || || |||||||| ||| |
Sbjct: 200 gcttttgatagacactgcaatatggttcttgaaaatgtccgggaaatgtggactgaggtg 259
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||| || || || || |||||||||| ||| || ||||||||| | ||||||||
Sbjct: 260 cctaagaccggtaaaggaaagaagaaggctcagccagtcaacaaggatcgtttcatcagc 319
Query: 442 aagatgttcct 452
|| ||||||||
Sbjct: 320 aaaatgttcct 330
>gb|BF649434.1|BF649434 NF080B09EC1F1076 Elicited cell culture Medicago truncatula cDNA
clone NF080B09EC 5', mRNA sequence
Length = 656
Score = 93.7 bits (47), Expect = 2e-017
Identities = 200/251 (79%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||| |||||||| | ||| || || || || || || ||||||||||| ||
Sbjct: 164 aagaatgaggaagaggaattcaacactggtccactatctgtactcatgatgagtgtgaaa 223
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||| ||||| || |||||||| || |||||||| ||||| || |||||||| |
Sbjct: 224 aacaacacacaggttctgatcaattgtcgtaacaacaaaaagcttctaggccgtgtcagg 283
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
||||||||| | ||||| || ||||| || || || || || || |||||||| ||| |
Sbjct: 284 gcttttgatagacactgcaatatggttcttgaaaatgtccgggaaatgtggactgaggtg 343
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||| || || || || |||||||||| ||| || ||||||||| | ||||||||
Sbjct: 344 cctaagaccggtaaaggaaagaagaaggctcagccagtcaacaaggatcgtttcatcagc 403
Query: 442 aagatgttcct 452
|| ||||||||
Sbjct: 404 aaaatgttcct 414
>gb|BF650818.1|BF650818 NF097B10EC1F1079 Elicited cell culture Medicago truncatula cDNA
clone NF097B10EC 5', mRNA sequence
Length = 664
Score = 93.7 bits (47), Expect = 2e-017
Identities = 200/251 (79%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||| |||||||| | ||| || || || || || || ||||||||||| ||
Sbjct: 157 aagaatgaggaagaggaattcaacactggtccactatctgtactcatgatgagtgtgaaa 216
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||| ||||| || |||||||| || |||||||| ||||| || |||||||| |
Sbjct: 217 aacaacacacaggttctgatcaattgtcgtaacaacaaaaagcttctaggccgtgtcagg 276
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
||||||||| | ||||| || ||||| || || || || || || |||||||| ||| |
Sbjct: 277 gcttttgatagacactgcaatatggttcttgaaaatgtccgggaaatgtggactgaggtg 336
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||| || || || || |||||||||| ||| || ||||||||| | ||||||||
Sbjct: 337 cctaagaccggtaaaggaaagaagaaggctcagccagtcaacaaggatcgtttcatcagc 396
Query: 442 aagatgttcct 452
|| ||||||||
Sbjct: 397 aaaatgttcct 407
>gb|BI266739.1|BI266739 NF085B07IN1F1061 Insect herbivory Medicago truncatula cDNA clone
NF085B07IN 5', mRNA sequence
Length = 651
Score = 93.7 bits (47), Expect = 2e-017
Identities = 200/251 (79%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||| |||||||| | ||| || || || || || || ||||||||||| ||
Sbjct: 169 aagaatgaggaagaggaattcaacactggtccactatctgtactcatgatgagtgtgaaa 228
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||| ||||| || |||||||| || |||||||| ||||| || |||||||| |
Sbjct: 229 aacaacacacaggttctgatcaattgtcgtaacaacaaaaagcttctaggccgtgtcagg 288
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
||||||||| | ||||| || ||||| || || || || || || |||||||| ||| |
Sbjct: 289 gcttttgatagacactgcaatatggttcttgaaaatgtccgggaaatgtggactgaggtg 348
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||| || || || || |||||||||| ||| || ||||||||| | ||||||||
Sbjct: 349 cctaagaccggtaaaggaaagaagaaggctcagccagtcaacaaggatcgtttcatcagc 408
Query: 442 aagatgttcct 452
|| ||||||||
Sbjct: 409 aaaatgttcct 419
>gb|BM779378.1|BM779378 EST589954 KV2 Medicago truncatula cDNA clone pKV2-51F16, mRNA
sequence
Length = 544
Score = 93.7 bits (47), Expect = 2e-017
Identities = 200/251 (79%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||| |||||||| | ||| || || || || || || ||||||||||| ||
Sbjct: 62 aagaatgaggaagaggaattcaacactggtccactatctgtactcatgatgagtgtgaaa 121
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||| ||||| || |||||||| || |||||||| ||||| || |||||||| |
Sbjct: 122 aacaacacacaggttctgatcaattgtcgtaacaacaaaaagcttctaggccgtgtcagg 181
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
||||||||| | ||||| || ||||| || || || || || || |||||||| ||| |
Sbjct: 182 gcttttgatagacactgcaatatggttcttgaaaatgtccgggaaatgtggactgaggtg 241
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||| || || || || |||||||||| ||| || ||||||||| | ||||||||
Sbjct: 242 cctaagaccggtaaaggaaagaagaaggctcagccagtcaacaaggatcgtttcatcagc 301
Query: 442 aagatgttcct 452
|| ||||||||
Sbjct: 302 aaaatgttcct 312
>gb|AJ497473.1|AJ497473 AJ497473 MTFLOW Medicago truncatula cDNA clone mt--abc955109g05,
mRNA sequence
Length = 623
Score = 93.7 bits (47), Expect = 2e-017
Identities = 200/251 (79%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||| |||||||| | ||| || || || || || || ||||||||||| ||
Sbjct: 69 aagaatgaggaagaggaattcaacactggtccactatctgtactcatgatgagtgtgaaa 128
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||| ||||| || |||||||| || |||||||| ||||| || |||||||| |
Sbjct: 129 aacaacacacaggttctgatcaattgtcgtaacaacaaaaagcttctaggccgtgtcagg 188
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
||||||||| | ||||| || ||||| || || || || || || |||||||| ||| |
Sbjct: 189 gcttttgatagacactgcaatatggttcttgaaaatgtccgggaaatgtggactgaggtg 248
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||| || || || || |||||||||| ||| || ||||||||| | ||||||||
Sbjct: 249 cctaagaccggtaaaggaaagaagaaggctcagccagtcaacaaggatcgtttcatcagc 308
Query: 442 aagatgttcct 452
|| ||||||||
Sbjct: 309 aaaatgttcct 319
>gb|CX520933.1|CX520933 s13dNF59C06VI040_449652 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 522
Score = 93.7 bits (47), Expect = 2e-017
Identities = 200/251 (79%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||| |||||||| | ||| || || || || || || ||||||||||| ||
Sbjct: 121 aagaatgaggaagaggaattcaacactggtccactatctgtactcatgatgagtgtgaaa 180
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||| ||||| || |||||||| || |||||||| ||||| || |||||||| |
Sbjct: 181 aacaacacacaggttctgatcaattgtcgtaacaacaaaaagcttctaggccgtgtcagg 240
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
||||||||| | ||||| || ||||| || || || || || || |||||||| ||| |
Sbjct: 241 gcttttgatagacactgcaatatggttcttgaaaatgtccgggaaatgtggactgaggtg 300
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||| || || || || |||||||||| ||| || ||||||||| | ||||||||
Sbjct: 301 cctaagaccggtaaaggaaagaagaaggctcagccagtcaacaaggatcgtttcatcagc 360
Query: 442 aagatgttcct 452
|| ||||||||
Sbjct: 361 aaaatgttcct 371
>gb|CX538446.1|CX538446 s13dNF79E01GS003_460144 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 365
Score = 93.7 bits (47), Expect = 2e-017
Identities = 200/251 (79%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||| |||||||| | ||| || || || || || || ||||||||||| ||
Sbjct: 114 aagaatgaggaagaggaattcaacactggtccactatctgtactcatgatgagtgtgaaa 173
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||| ||||| || |||||||| || |||||||| ||||| || |||||||| |
Sbjct: 174 aacaacacacaggttctgatcaattgtcgtaacaacaaaaagcttctaggccgtgtcagg 233
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
||||||||| | ||||| || ||||| || || || || || || |||||||| ||| |
Sbjct: 234 gcttttgatagacactgcaatatggttcttgaaaatgtccgggaaatgtggactgaggtg 293
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||| || || || || |||||||||| ||| || ||||||||| | ||||||||
Sbjct: 294 cctaagaccggtaaaggaaagaagaaggctcagccagtcaacaaggatcgtttcatcagc 353
Query: 442 aagatgttcct 452
|| ||||||||
Sbjct: 354 aaaatgttcct 364
>gb|DW016473.1|DW016473 EST1225434 MTY Medicago truncatula cDNA clone MTYAH63, mRNA
sequence
Length = 756
Score = 93.7 bits (47), Expect = 2e-017
Identities = 200/251 (79%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||| |||||||| | ||| || || || || || || ||||||||||| ||
Sbjct: 148 aagaatgaggaagaggaattcaacactggtccactatctgtactcatgatgagtgtgaaa 207
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||| ||||| || |||||||| || |||||||| ||||| || |||||||| |
Sbjct: 208 aacaacacacaggttctgatcaattgtcgtaacaacaaaaagcttctaggccgtgtcagg 267
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
||||||||| | ||||| || ||||| || || || || || || |||||||| ||| |
Sbjct: 268 gcttttgatagacactgcaatatggttcttgaaaatgtccgggaaatgtggactgaggtg 327
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||| || || || || |||||||||| ||| || ||||||||| | ||||||||
Sbjct: 328 cctaagaccggtaaaggaaagaagaaggctcagccagtcaacaaggatcgtttcatcagc 387
Query: 442 aagatgttcct 452
|| ||||||||
Sbjct: 388 aaaatgttcct 398
>gb|AL376211.1|AL376211 MtBB22A12F1 MtBB Medicago truncatula cDNA clone MtBB22A12 T3, mRNA
sequence
Length = 464
Score = 91.7 bits (46), Expect = 8e-017
Identities = 166/206 (80%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||| || |||||||| ||||| || |||||||| || |||||||| |||||
Sbjct: 8 atgatgagtgtgaaaaacaacacacaggttctgatcaattgtcgtaacaacaaaaagctt 67
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|| |||||||| | ||||||||| | ||||| || ||||| || || || || || ||
Sbjct: 68 ctaggccgtgtcagggcttttgatagacactgcaatatggttcttgaaaatgtccgggaa 127
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || ||||| || || || || |||||||||| ||| || ||||||
Sbjct: 128 atgtggactgaggtgcctaagaccggtaaaggaaagaagaaggctcagccagtcaacaag 187
Query: 427 gatagattcatcagtaagatgttcct 452
||| | |||||||| || ||||||||
Sbjct: 188 gatcgtttcatcagcaaaatgttcct 213
>gb|AJ847442.1|AJ847442 AJ847442 MtSTA Medicago truncatula cDNA clone MtTA01H10S6, mRNA
sequence
Length = 468
Score = 91.7 bits (46), Expect = 8e-017
Identities = 166/206 (80%)
Strand = Plus / Plus
Query: 247 atgatgagtgttaagaacaacacccaggtcctcatcaattgccgcaacaacaagaagctg 306
||||||||||| || |||||||| ||||| || |||||||| || |||||||| |||||
Sbjct: 17 atgatgagtgtgaaaaacaacacacaggttctgatcaattgtcgtaacaacaaaaagctt 76
Query: 307 cttggccgtgttcgtgcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgag 366
|| |||||||| | ||||||||| | ||||| || ||||| || || || || || ||
Sbjct: 77 ctaggccgtgtcagggcttttgatagacactgcaatatggttcttgaaaatgtccgggaa 136
Query: 367 atgtggacagagatccccaagactggcaagggcaaaaagaaggctctgcctgtgaacaag 426
|||||||| ||| | || ||||| || || || || |||||||||| ||| || ||||||
Sbjct: 137 atgtggactgaggtgcctaagaccggtaaaggaaagaagaaggctcagccagtcaacaag 196
Query: 427 gatagattcatcagtaagatgttcct 452
||| | |||||||| || ||||||||
Sbjct: 197 gatcgtttcatcagcaaaatgttcct 222
>gb|BG455780.1|BG455780 NF067D09PL1F1076 Phosphate starved leaf Medicago truncatula cDNA
clone NF067D09PL 5', mRNA sequence
Length = 683
Score = 87.7 bits (44), Expect = 1e-015
Identities = 199/251 (79%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||| |||||||| | ||| || || || || || || ||||||||||| ||
Sbjct: 111 aagaatgaggaagaggaattcaacactggtccactatctgtactcatgatgagtgtgaaa 170
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||| ||||| || |||||||| || |||||||| ||||| || |||||||| |
Sbjct: 171 aacaacacacaggttctgatcaattgtcgtaacaacaaaaagcttctaggccgtgtcagg 230
Query: 322 gcttttgatcgccactgtaacatggtgctcgagaacgtgcgtgagatgtggacagagatc 381
||||||||| | ||||| || ||||| || || || || || || |||||||| ||| |
Sbjct: 231 gcttttgatagacactgcaatatggttcttgaaaatgtccgggaaatgtggactgaggtg 290
Query: 382 cccaagactggcaagggcaaaaagaaggctctgcctgtgaacaaggatagattcatcagt 441
|| ||||| || || || || |||||||||| ||| || ||||||||| | |||||||
Sbjct: 291 cctaagaccggtaaaggaaagaagaaggctcagccagtcaacaaggatcgtntcatcagc 350
Query: 442 aagatgttcct 452
|| ||||||||
Sbjct: 351 aaaatgttcct 361
>gb|BI272395.1|BI272395 NF020H02FL1F1027 Developing flower Medicago truncatula cDNA clone
NF020H02FL 5', mRNA sequence
Length = 354
Score = 69.9 bits (35), Expect = 3e-010
Identities = 118/146 (80%)
Strand = Plus / Plus
Query: 202 aagaaagaggaggaggaatttagcacaggccctctgtcagtcctaatgatgagtgttaag 261
||||| ||||| |||||||| | ||| || || || || || || ||||||||||| ||
Sbjct: 160 aagaatgaggaagaggaattcaacactggtccactatctgtactcatgatgagtgtgaaa 219
Query: 262 aacaacacccaggtcctcatcaattgccgcaacaacaagaagctgcttggccgtgttcgt 321
|||||||| ||||| || |||||||| || |||||||| ||||| || |||||||| |
Sbjct: 220 aacaacacacaggttctgatcaattgncgtaacaacaaaaagcttctaggccgtgtcagg 279
Query: 322 gcttttgatcgccactgtaacatggt 347
||||||||| | ||||| || |||||
Sbjct: 280 gcttttgatagacactgcaatatggt 305
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 148,670
Number of Sequences: 392609
Number of extensions: 148670
Number of successful extensions: 11681
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11668
Number of HSP's gapped (non-prelim): 13
length of query: 739
length of database: 441,732,993
effective HSP length: 19
effective length of query: 720
effective length of database: 434,273,422
effective search space: 312676863840
effective search space used: 312676863840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)