BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.452
(1348 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR310667.1| mte1-32I14RM1 BAC end, cultivar Jemalong A1... 42 0.12
gb|AC141862.44| Medicago truncatula clone mth2-33n1, WORKIN... 42 0.12
emb|CR314977.1| mte1-38N4FM1 BAC end, cultivar Jemalong A17... 40 0.48
emb|CR317705.1| mte1-42G10FM1 BAC end, cultivar Jemalong A1... 40 0.48
emb|CR306889.1| mte1-27H11FM1 BAC end, cultivar Jemalong A1... 38 1.9
gb|AC126785.11| Medicago truncatula clone mth2-9i24, comple... 38 1.9
gb|AC146910.16| Medicago truncatula clone mth2-59i21, compl... 38 1.9
emb|CR954194.1| Medicago truncatula chromosome 5 clone mte1... 38 1.9
gb|AC146551.24| Medicago truncatula clone mth2-8m1, WORKING... 38 1.9
gb|CG957809.1|CG957809 MBEFH86TF mth2 Medicago truncatula g... 36 7.4
gb|CG972661.1|CG972661 MBEKO94TF mth2 Medicago truncatula g... 36 7.4
gb|AJ847153.1|AJ847153 AJ847153 MtSTW Medicago truncatula c... 36 7.4
gb|AC146341.10| Medicago truncatula clone mth2-10g1, comple... 36 7.4
gb|AC149641.1| Medicago truncatula chromosome 7 clone mth2-... 36 7.4
gb|AC146548.9| Medicago truncatula clone mth2-2p3, complete... 36 7.4
gb|AC153000.5| Medicago truncatula clone mth2-94c2, complet... 36 7.4
gb|AC149579.11| Medicago truncatula clone mth2-99d8, comple... 36 7.4
emb|CR932965.2| Medicago truncatula chromosome 5 clone mth2... 36 7.4
gb|AC151914.19| Medicago truncatula clone mth2-29f16, compl... 36 7.4
gb|AC165276.2| Medicago truncatula chromosome 2 clone mth2-... 36 7.4
gb|AC146791.12| Medicago truncatula clone mth2-123m17, comp... 36 7.4
gb|AC146703.19| Medicago truncatula clone mth2-22o12, WORKI... 36 7.4
gb|AC144929.33| Medicago truncatula clone mth2-28b22, WORKI... 36 7.4
gb|AC146329.18| Medicago truncatula clone mth2-5i21, comple... 36 7.4
gb|AC146333.34| Medicago truncatula clone mth2-8d3, WORKING... 36 7.4
>emb|CR310667.1| mte1-32I14RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 502
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1195 aactcaaataaatatacatga 1215
|||||||||||||||||||||
Sbjct: 327 aactcaaataaatatacatga 307
>gb|AC141862.44| Medicago truncatula clone mth2-33n1, WORKING DRAFT SEQUENCE, 7 ordered
pieces
Length = 134307
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 723 gcgatgtctacagcttcggcgtggtgcttctggagct 759
|||| |||||||||||||| ||||| ||||| |||||
Sbjct: 75824 gcgacgtctacagcttcggtgtggtacttctagagct 75860
>emb|CR314977.1| mte1-38N4FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 596 ccaaaagtctctgactttgg 615
||||||||||||||||||||
Sbjct: 196 ccaaaagtctctgactttgg 215
>emb|CR317705.1| mte1-42G10FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 844
Score = 40.1 bits (20), Expect = 0.48
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 596 ccaaaagtctctgactttgg 615
||||||||||||||||||||
Sbjct: 216 ccaaaagtctctgactttgg 235
>emb|CR306889.1| mte1-27H11FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 926
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1038 tgggtacacatatataaaataat 1060
|||||||||||||||| ||||||
Sbjct: 372 tgggtacacatatatacaataat 394
>gb|AC126785.11| Medicago truncatula clone mth2-9i24, complete sequence
Length = 132702
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 278 agggtggaggaagatgggt 296
|||||||||||||||||||
Sbjct: 130329 agggtggaggaagatgggt 130311
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1189 ttcctcaactcaaataaa 1206
||||||||||||||||||
Sbjct: 99900 ttcctcaactcaaataaa 99917
>gb|AC146910.16| Medicago truncatula clone mth2-59i21, complete sequence
Length = 109724
Score = 38.2 bits (19), Expect = 1.9
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1038 tgggtacacatatataaaataat 1060
|||||||||||||||| ||||||
Sbjct: 97185 tgggtacacatatatacaataat 97163
>emb|CR954194.1| Medicago truncatula chromosome 5 clone mte1-1f10, WORKING DRAFT
SEQUENCE
Length = 149242
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 278 agggtggaggaagatgggt 296
|||||||||||||||||||
Sbjct: 864 agggtggaggaagatgggt 846
>gb|AC146551.24| Medicago truncatula clone mth2-8m1, WORKING DRAFT SEQUENCE, 5
unordered pieces
Length = 129258
Score = 38.2 bits (19), Expect = 1.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 865 gatgtatgatagcagactt 883
|||||||||||||||||||
Sbjct: 5777 gatgtatgatagcagactt 5795
>gb|CG957809.1|CG957809 MBEFH86TF mth2 Medicago truncatula genomic clone 43P4, DNA sequence
Length = 611
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1290 cttaatttgatgtatgtc 1307
||||||||||||||||||
Sbjct: 24 cttaatttgatgtatgtc 41
>gb|CG972661.1|CG972661 MBEKO94TF mth2 Medicago truncatula genomic clone 75P19, DNA sequence
Length = 761
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1212 atgatttattcttccaataaaa 1233
|||| |||||||||||||||||
Sbjct: 395 atgaattattcttccaataaaa 374
>gb|AJ847153.1|AJ847153 AJ847153 MtSTW Medicago truncatula cDNA clone MtTW06C07N1, mRNA
sequence
Length = 833
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 550 tggagacatcaagccttc 567
||||||||||||||||||
Sbjct: 161 tggagacatcaagccttc 178
>gb|AC146341.10| Medicago truncatula clone mth2-10g1, complete sequence
Length = 147669
Score = 36.2 bits (18), Expect = 7.4
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 545 gtccatggagacatcaagccttccaacatcctccttga 582
|||||||| ||| | || ||||||||||| ||||||||
Sbjct: 71868 gtccatggtgacttaaaaccttccaacattctccttga 71905
>gb|AC149641.1| Medicago truncatula chromosome 7 clone mth2-55l11, *** SEQUENCING IN
PROGRESS ***, 3 ordered pieces
Length = 117197
Score = 36.2 bits (18), Expect = 7.4
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 125 cttggaggagggcactttggcaatgt 150
||||||| |||| |||||||||||||
Sbjct: 92913 cttggagaaggggactttggcaatgt 92938
>gb|AC146548.9| Medicago truncatula clone mth2-2p3, complete sequence
Length = 129327
Score = 36.2 bits (18), Expect = 7.4
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 721 gtgcgatgtctacagcttcggcgtggtgct 750
|||||||||||| |||||||| || |||||
Sbjct: 69091 gtgcgatgtctatagcttcggagttgtgct 69120
>gb|AC153000.5| Medicago truncatula clone mth2-94c2, complete sequence
Length = 97390
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1193 tcaactcaaataaatata 1210
||||||||||||||||||
Sbjct: 42557 tcaactcaaataaatata 42540
>gb|AC149579.11| Medicago truncatula clone mth2-99d8, complete sequence
Length = 111010
Score = 36.2 bits (18), Expect = 7.4
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 125 cttggaggagggcactttggcaatgt 150
||||||| |||| |||||||||||||
Sbjct: 17999 cttggagaaggggactttggcaatgt 17974
>emb|CR932965.2| Medicago truncatula chromosome 5 clone mth2-47e6, COMPLETE SEQUENCE
Length = 96647
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 550 tggagacatcaagccttc 567
||||||||||||||||||
Sbjct: 15137 tggagacatcaagccttc 15154
>gb|AC151914.19| Medicago truncatula clone mth2-29f16, complete sequence
Length = 111276
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 16 caacaggaaaagattcaa 33
||||||||||||||||||
Sbjct: 104345 caacaggaaaagattcaa 104362
>gb|AC165276.2| Medicago truncatula chromosome 2 clone mth2-139p17, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 128631
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 16 caacaggaaaagattcaa 33
||||||||||||||||||
Sbjct: 20426 caacaggaaaagattcaa 20443
>gb|AC146791.12| Medicago truncatula clone mth2-123m17, complete sequence
Length = 130971
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1199 caaataaatatacatgat 1216
||||||||||||||||||
Sbjct: 31136 caaataaatatacatgat 31153
>gb|AC146703.19| Medicago truncatula clone mth2-22o12, WORKING DRAFT SEQUENCE, 25
unordered pieces
Length = 235128
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 7 gactctaaacaacaggaaaaga 28
||||||| ||||||||||||||
Sbjct: 51181 gactctacacaacaggaaaaga 51160
>gb|AC144929.33| Medicago truncatula clone mth2-28b22, WORKING DRAFT SEQUENCE, 4
unordered pieces
Length = 272437
Score = 36.2 bits (18), Expect = 7.4
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1212 atgatttattcttccaataaaa 1233
|||| |||||||||||||||||
Sbjct: 33255 atgaattattcttccaataaaa 33234
>gb|AC146329.18| Medicago truncatula clone mth2-5i21, complete sequence
Length = 129327
Score = 36.2 bits (18), Expect = 7.4
Identities = 27/30 (90%)
Strand = Plus / Plus
Query: 721 gtgcgatgtctacagcttcggcgtggtgct 750
|||||||||||| |||||||| || |||||
Sbjct: 69091 gtgcgatgtctatagcttcggagttgtgct 69120
>gb|AC146333.34| Medicago truncatula clone mth2-8d3, WORKING DRAFT SEQUENCE
Length = 122694
Score = 36.2 bits (18), Expect = 7.4
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1042 tacacatatataaaataa 1059
||||||||||||||||||
Sbjct: 50792 tacacatatataaaataa 50809
Database: Mt_nucl_with_EST.fasta
Posted date: May 2, 2006 2:46 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 301,654
Number of Sequences: 392609
Number of extensions: 301654
Number of successful extensions: 23228
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23056
Number of HSP's gapped (non-prelim): 172
length of query: 1348
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1328
effective length of database: 433,880,813
effective search space: 576193719664
effective search space used: 576193719664
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)