BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 11001390.3.1
(588 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG454439.1|BG454439 NF111H05LF1F1045 Developing leaf Med... 48 8e-004
emb|CT010464.5| Medicago truncatula chromosome 3 clone MTH2... 48 8e-004
gb|AC140105.5| Medicago truncatula clone mth2-5d16, WORKING... 48 8e-004
emb|CR484576.1| mth2-152A4RM1 BAC end, cultivar Jemalong A1... 46 0.003
emb|CR484943.1| mth2-152B2RM1 BAC end, cultivar Jemalong A1... 46 0.003
emb|CR512532.1| mth4-37M23FM1 BAC end, cultivar Jemalong A1... 46 0.003
gb|AW694214.1|AW694214 NF073E12ST1F1098 Developing stem Med... 46 0.003
gb|BF641575.1|BF641575 NF068D01IN1F1012 Insect herbivory Me... 46 0.003
gb|BI267392.1|BI267392 NF107B05IN1F1044 Insect herbivory Me... 46 0.003
gb|CX528102.1|CX528102 s13dNF51G09AT072_516716 Aphid-Infect... 46 0.003
gb|AC141108.3| Medicago truncatula clone mth2-22g6, complet... 46 0.003
gb|AC139344.17| Medicago truncatula clone mth2-34b22, compl... 46 0.003
gb|AC156828.8| Medicago truncatula clone mth2-18j19, comple... 44 0.013
gb|CG971257.1|CG971257 MBEHV58TR mth2 Medicago truncatula g... 42 0.052
gb|AW686355.2|AW686355 NF037A03NR1F1000 Nodulated root Medi... 42 0.052
gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone m... 42 0.052
gb|CG953324.1|CG953324 MBEIM35TR mth2 Medicago truncatula g... 40 0.20
emb|CR489949.1| mth2-160B8RM1 BAC end, cultivar Jemalong A1... 40 0.20
emb|CR955005.2| Medicago truncatula chromosome 5 clone mte1... 40 0.20
gb|AC160957.5| Medicago truncatula clone mth2-32b23, WORKIN... 38 0.81
gb|AC152497.21| Medicago truncatula clone mth2-36l14, WORKI... 38 0.81
gb|AC157647.19| Medicago truncatula clone mth2-66k5, WORKIN... 38 0.81
gb|CG923847.1|CG923847 MBEIM28TR mth2 Medicago truncatula g... 36 3.2
emb|CR513333.1| mth4-42G10FM2 BAC end, cultivar Jemalong A1... 36 3.2
gb|AJ388776.1|AJ388776 AJ388776 Medicago truncatula R108 Me... 36 3.2
gb|CX521629.1|CX521629 s13dNF1KD05VI044_469062 Virus-Infect... 36 3.2
gb|AC124218.17| Medicago truncatula clone mth2-30b20, compl... 36 3.2
gb|AC148994.3| Medicago truncatula chromosome 7 BAC clone m... 36 3.2
gb|AC148345.3| Medicago truncatula chromosome 7 BAC clone m... 36 3.2
gb|AC155893.3| Medicago truncatula chromosome 7 clone mth2-... 36 3.2
gb|AC159146.3| Medicago truncatula chromosome 7 clone mth2-... 36 3.2
gb|AC151744.23| Medicago truncatula clone mth2-32k10, compl... 36 3.2
gb|AC151724.20| Medicago truncatula clone mth2-78n17, WORKI... 36 3.2
>gb|BG454439.1|BG454439 NF111H05LF1F1045 Developing leaf Medicago truncatula cDNA clone
NF111H05LF 5', mRNA sequence
Length = 669
Score = 48.1 bits (24), Expect = 8e-004
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 371 tgctcagcttttcttgccaacattgatgaacataaa 406
|||||||| || ||||||||||||||||||| ||||
Sbjct: 69 tgctcagcgttccttgccaacattgatgaacgtaaa 104
Score = 46.1 bits (23), Expect = 0.003
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 444 taccaccatggtctgtgagcata 466
|||||||||||||||||||||||
Sbjct: 142 taccaccatggtctgtgagcata 164
>emb|CT010464.5| Medicago truncatula chromosome 3 clone MTH2-95O22, WORKING DRAFT
SEQUENCE, 2 unordered pieces
Length = 116995
Score = 48.1 bits (24), Expect = 8e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 152 tatgattatgatgcaccaattgacgaatatggtatcttaa 191
||||| |||||||||||| |||| |||||||||| |||||
Sbjct: 99438 tatgactatgatgcaccacttgatgaatatggtaacttaa 99399
>gb|AC140105.5| Medicago truncatula clone mth2-5d16, WORKING DRAFT SEQUENCE, 18
unordered pieces
Length = 82710
Score = 48.1 bits (24), Expect = 8e-004
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 152 tatgattatgatgcaccaattgacgaatatggtatcttaa 191
||||| |||||||||||| |||| |||||||||| |||||
Sbjct: 41429 tatgactatgatgcaccacttgatgaatatggtaacttaa 41390
>emb|CR484576.1| mth2-152A4RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 603
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 152 tatgattatgatgcaccaattgacgaatatggtat 186
||||||||||||||||| ||||| || ||||||||
Sbjct: 283 tatgattatgatgcaccgattgatgagtatggtat 249
>emb|CR484943.1| mth2-152B2RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 573
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 152 tatgattatgatgcaccaattgacgaatatggtat 186
||||||||||||||||| ||||| || ||||||||
Sbjct: 234 tatgattatgatgcaccgattgatgagtatggtat 200
>emb|CR512532.1| mth4-37M23FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 334
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 152 tatgattatgatgcaccaattgacgaatatggtat 186
||||||||||||||||| ||||| || ||||||||
Sbjct: 200 tatgattatgatgcacccattgatgagtatggtat 166
>gb|AW694214.1|AW694214 NF073E12ST1F1098 Developing stem Medicago truncatula cDNA clone
NF073E12ST 5', mRNA sequence
Length = 656
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
||||||||||||||||| || ||||| ||||||||
Sbjct: 121 agctatgattatgatgctcctattgatgaatatgg 155
>gb|BF641575.1|BF641575 NF068D01IN1F1012 Insect herbivory Medicago truncatula cDNA clone
NF068D01IN 5', mRNA sequence
Length = 559
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
||||||||||||||||| || ||||| ||||||||
Sbjct: 410 agctatgattatgatgctcctattgatgaatatgg 444
>gb|BI267392.1|BI267392 NF107B05IN1F1044 Insect herbivory Medicago truncatula cDNA clone
NF107B05IN 5', mRNA sequence
Length = 673
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
||||||||||||||||| || ||||| ||||||||
Sbjct: 306 agctatgattatgatgctcctattgatgaatatgg 340
>gb|CX528102.1|CX528102 s13dNF51G09AT072_516716 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 586
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
||||||||||||||||| || ||||| ||||||||
Sbjct: 116 agctatgattatgatgctcctattgatgaatatgg 150
>gb|AC141108.3| Medicago truncatula clone mth2-22g6, complete sequence
Length = 119745
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 152 tatgattatgatgcaccaattgacgaatatggtat 186
||||||||||||||||| ||||| || ||||||||
Sbjct: 63896 tatgattatgatgcaccgattgatgagtatggtat 63930
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 155 gattatgatgcaccaattgacgaatatggtat 186
|||| ||||||||| ||||| |||||||||||
Sbjct: 45773 gattttgatgcaccgattgatgaatatggtat 45804
>gb|AC139344.17| Medicago truncatula clone mth2-34b22, complete sequence
Length = 129728
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 152 tatgattatgatgcaccaattgacgaatatggtat 186
||||||||||||||||| ||||| || ||||||||
Sbjct: 38655 tatgattatgatgcacccattgatgagtatggtat 38621
>gb|AC156828.8| Medicago truncatula clone mth2-18j19, complete sequence
Length = 133901
Score = 44.1 bits (22), Expect = 0.013
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 152 tatgattatgatgcaccaattgacgaatatggta 185
||||||||||||||||| |||| ||||||||||
Sbjct: 87586 tatgattatgatgcacctcttgatgaatatggta 87619
>gb|CG971257.1|CG971257 MBEHV58TR mth2 Medicago truncatula genomic clone 59I20, DNA
sequence
Length = 915
Score = 42.1 bits (21), Expect = 0.052
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatggta 185
|||||||| ||||||||||| |||| ||||||||||
Sbjct: 375 agctatgactatgatgcacctcttgatgaatatggta 411
>gb|AW686355.2|AW686355 NF037A03NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF037A03NR 5', mRNA sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.052
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 83 aattattacatgtattttggtggaaccaattttgagcggacagctggtggtcc 135
||||||||||||||| ||| ||||| ||||||| | ||||||||||||||
Sbjct: 209 aattattacatgtatcatggaggaacaaattttggtagaacagctggtggtcc 261
Score = 38.2 bits (19), Expect = 0.81
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 149 agctatgattatgatgcaccaattgacgaatatgg 183
|||||||| ||||||||||| |||| ||||||||
Sbjct: 275 agctatgactatgatgcacctcttgatgaatatgg 309
>gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone mth2-85c24, complete
sequence
Length = 132817
Score = 42.1 bits (21), Expect = 0.052
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 149 agctatgattatgatgcaccaattgacgaatatggta 185
|||||||| ||||||||||| |||| ||||||||||
Sbjct: 60555 agctatgactatgatgcacctcttgatgaatatggta 60519
>gb|CG953324.1|CG953324 MBEIM35TR mth2 Medicago truncatula genomic clone 63E21, DNA
sequence
Length = 910
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 155 gattatgatgcaccaattgacgaatatggtat 186
|||| ||||||||| ||||| |||||||||||
Sbjct: 279 gattttgatgcaccgattgatgaatatggtat 248
>emb|CR489949.1| mth2-160B8RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.20
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 155 gattatgatgcaccaattgacgaatatggtat 186
|||| ||||||||| ||||| |||||||||||
Sbjct: 284 gattttgatgcaccgattgatgaatatggtat 253
>emb|CR955005.2| Medicago truncatula chromosome 5 clone mte1-58c24, COMPLETE SEQUENCE
Length = 106497
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 325 tgaaaatgtccacacaaatg 344
||||||||||||||||||||
Sbjct: 81563 tgaaaatgtccacacaaatg 81582
>gb|AC160957.5| Medicago truncatula clone mth2-32b23, WORKING DRAFT SEQUENCE, 21
unordered pieces
Length = 132682
Score = 38.2 bits (19), Expect = 0.81
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 277 tcattatgtaaaattaggg 295
|||||||||||||||||||
Sbjct: 90812 tcattatgtaaaattaggg 90830
>gb|AC152497.21| Medicago truncatula clone mth2-36l14, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 130349
Score = 38.2 bits (19), Expect = 0.81
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 277 tcattatgtaaaattaggg 295
|||||||||||||||||||
Sbjct: 114196 tcattatgtaaaattaggg 114178
>gb|AC157647.19| Medicago truncatula clone mth2-66k5, WORKING DRAFT SEQUENCE, 8 ordered
pieces
Length = 122626
Score = 38.2 bits (19), Expect = 0.81
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 333 tccacacaaatggaagcat 351
|||||||||||||||||||
Sbjct: 56299 tccacacaaatggaagcat 56281
>gb|CG923847.1|CG923847 MBEIM28TR mth2 Medicago truncatula genomic clone 63E7, DNA sequence
Length = 931
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 379 ttttcttgccaacattgatgaa 400
|||||||||||||||| |||||
Sbjct: 327 ttttcttgccaacattcatgaa 306
>emb|CR513333.1| mth4-42G10FM2 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 566
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 73 aagcttacaaaattatta 90
||||||||||||||||||
Sbjct: 500 aagcttacaaaattatta 483
>gb|AJ388776.1|AJ388776 AJ388776 Medicago truncatula R108 Medicago truncatula cDNA clone
MtNo139 similar to cadmium induced protein, mRNA
sequence
Length = 609
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 344 ggaagcatttcaggaaattcac 365
|||||| |||||||||||||||
Sbjct: 531 ggaagcttttcaggaaattcac 510
>gb|CX521629.1|CX521629 s13dNF1KD05VI044_469062 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 550
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 140 cagataactagctatgat 157
||||||||||||||||||
Sbjct: 406 cagataactagctatgat 423
>gb|AC124218.17| Medicago truncatula clone mth2-30b20, complete sequence
Length = 120761
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 379 ttttcttgccaacattgatgaa 400
|||||||||||||||| |||||
Sbjct: 326 ttttcttgccaacattcatgaa 305
>gb|AC148994.3| Medicago truncatula chromosome 7 BAC clone mth2-3c7, complete sequence
Length = 109093
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 379 ttttcttgccaacattgatgaa 400
|||||||||||||||| |||||
Sbjct: 25299 ttttcttgccaacattcatgaa 25320
>gb|AC148345.3| Medicago truncatula chromosome 7 BAC clone mth2-14a16, complete
sequence
Length = 105328
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 391 cattgatgaacataaata 408
||||||||||||||||||
Sbjct: 39643 cattgatgaacataaata 39660
>gb|AC155893.3| Medicago truncatula chromosome 7 clone mth2-65e4, *** SEQUENCING IN
PROGRESS ***
Length = 128227
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 81 aaaattattacatgtatt 98
||||||||||||||||||
Sbjct: 98181 aaaattattacatgtatt 98164
>gb|AC159146.3| Medicago truncatula chromosome 7 clone mth2-75l24, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 151157
Score = 36.2 bits (18), Expect = 3.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 80 caaaattattacatgtattttg 101
||||||||| ||||||||||||
Sbjct: 69374 caaaattatgacatgtattttg 69395
>gb|AC151744.23| Medicago truncatula clone mth2-32k10, complete sequence
Length = 110897
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 140 cagataactagctatgat 157
||||||||||||||||||
Sbjct: 64041 cagataactagctatgat 64024
>gb|AC151724.20| Medicago truncatula clone mth2-78n17, WORKING DRAFT SEQUENCE, 7 ordered
pieces
Length = 148376
Score = 36.2 bits (18), Expect = 3.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 422 atttttggaaaatcttat 439
||||||||||||||||||
Sbjct: 107408 atttttggaaaatcttat 107391
Database: Mt_nucl_with_EST.fasta
Posted date: May 2, 2006 2:46 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,309
Number of Sequences: 392609
Number of extensions: 176309
Number of successful extensions: 12454
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12322
Number of HSP's gapped (non-prelim): 132
length of query: 588
length of database: 441,732,993
effective HSP length: 19
effective length of query: 569
effective length of database: 434,273,422
effective search space: 247101577118
effective search space used: 247101577118
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)